Wall clock time and date at job start Tue Mar 31 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46764 * 2 1 4 4 C 1.53001 * 109.46912 * 119.99427 * 2 1 3 5 5 C 1.50699 * 109.47323 * 295.00101 * 4 2 1 6 6 H 1.08002 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99808 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00203 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47026 * 59.99909 * 9 7 5 11 11 H 1.48496 * 109.47013 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47018 * 300.00088 * 9 7 5 13 13 C 1.52994 * 109.47076 * 239.99580 * 2 1 3 14 14 N 1.46900 * 109.47126 * 63.80923 * 13 2 1 15 15 C 1.47903 * 111.00305 * 75.78425 * 14 13 2 16 16 C 1.54602 * 102.63613 * 94.67294 * 15 14 13 17 17 C 1.51580 * 102.81545 * 25.59405 * 16 15 14 18 18 C 1.38989 * 107.94842 * 343.82399 * 17 16 15 19 19 C 1.39372 * 119.09114 * 179.79145 * 18 17 16 20 20 C 1.37962 * 120.22598 * 359.78780 * 19 18 17 21 21 C 1.38241 * 120.27861 * 0.43446 * 20 19 18 22 22 C 1.37987 * 131.57007 * 163.71149 * 17 16 15 23 23 Cl 1.73595 * 119.97070 * 0.35464 * 22 17 16 24 24 H 1.09003 * 109.47097 * 305.41045 * 1 2 3 25 25 H 1.09000 * 109.47177 * 65.41888 * 1 2 3 26 26 H 1.09007 * 109.46830 * 185.41617 * 1 2 3 27 27 H 1.08997 * 109.46875 * 55.00564 * 4 2 1 28 28 H 1.09004 * 109.46684 * 175.00111 * 4 2 1 29 29 H 0.97000 * 119.99510 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.47582 * 303.80332 * 13 2 1 31 31 H 1.09001 * 109.46762 * 183.80298 * 13 2 1 32 32 H 1.08995 * 110.77970 * 212.95766 * 15 14 13 33 33 H 1.08998 * 110.77698 * 336.19676 * 15 14 13 34 34 H 1.08995 * 110.74576 * 143.92573 * 16 15 14 35 35 H 1.09001 * 110.74432 * 267.08231 * 16 15 14 36 36 H 1.07992 * 119.88743 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.85976 * 180.23902 * 20 19 18 38 38 H 1.08008 * 120.06634 * 179.68752 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9744 2.3756 7 6 1.9932 -0.4014 3.7283 8 7 2.6773 -1.5180 3.8512 9 14 1.4984 0.5630 5.2497 10 1 0.0184 0.6684 5.3092 11 1 1.9946 -0.1363 6.4621 12 1 2.0895 1.9239 5.1870 13 6 2.0400 -0.7213 -1.2491 14 7 1.6269 0.0222 -2.4469 15 6 2.4566 1.2325 -2.6319 16 6 3.5555 0.7440 -3.6035 17 6 2.8781 -0.4021 -4.3283 18 6 1.7544 -0.7673 -3.5964 19 6 0.9509 -1.8067 -4.0618 20 6 1.2687 -2.4580 -5.2357 21 6 2.3909 -2.0909 -5.9548 22 6 3.1957 -1.0607 -5.4985 23 17 4.6057 -0.5976 -6.3991 24 1 -0.3633 0.5955 0.8376 25 1 -0.3633 0.4275 -0.9345 26 1 -0.3633 -1.0232 0.0970 27 1 1.6054 -1.7197 1.2952 28 1 3.1264 -0.7993 1.2057 29 1 2.9251 -1.8404 4.7318 30 1 1.6222 -1.7274 -1.2839 31 1 3.1279 -0.7807 -1.2157 32 1 1.8732 2.0364 -3.0807 33 1 2.8892 1.5534 -1.6843 34 1 3.8316 1.5334 -4.3025 35 1 4.4292 0.3941 -3.0538 36 1 0.0750 -2.1013 -3.5030 37 1 0.6398 -3.2601 -5.5929 38 1 2.6392 -2.6065 -6.8708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180750155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:03 Heat of formation + Delta-G solvation = 13.873083 kcal Electronic energy + Delta-G solvation = -19248.048988 eV Core-core repulsion = 16308.596820 eV Total energy + Delta-G solvation = -2939.452168 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85310 -37.49647 -36.35892 -34.98576 -32.51185 -31.54744 -29.48352 -28.84398 -26.83353 -25.64250 -23.25081 -22.93189 -21.50067 -20.92988 -18.81125 -16.99167 -16.34795 -16.21179 -15.61371 -15.39334 -14.55178 -14.32491 -13.99977 -13.80406 -13.38781 -13.13544 -12.72860 -12.41937 -12.25020 -11.95286 -11.67896 -11.59761 -11.42530 -11.24777 -11.04465 -10.99781 -10.87007 -10.80854 -10.45381 -10.32950 -9.72897 -9.48169 -9.16974 -8.94206 -8.76327 -8.34422 -7.85556 -5.99280 -4.00813 1.08457 1.14303 2.02979 3.33450 3.38077 3.40202 3.45719 3.74565 4.44857 4.48535 4.69914 4.87764 5.06851 5.12507 5.24438 5.31839 5.36586 5.52854 5.56513 5.70414 5.76906 5.80187 6.01449 6.05776 6.07314 6.22665 6.26651 6.30697 6.44864 6.51892 6.64510 6.93986 7.02460 7.14491 7.23486 7.33947 7.65636 7.80655 8.00102 8.43609 9.05174 9.62829 11.12167 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003575 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.753157 B = 7830.962576 C = 8080.264867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.487 5.487 15 C 0.049 3.951 16 C -0.107 4.107 17 C -0.137 4.137 18 C 0.119 3.881 19 C -0.112 4.112 20 C -0.091 4.091 21 C -0.135 4.135 22 C -0.002 4.002 23 Cl -0.079 7.079 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.260 0.740 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 0.790 -19.933 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.061 4.061 14 N -0.203 5.203 15 C -0.078 4.078 16 C -0.145 4.145 17 C -0.141 4.141 18 C 0.021 3.979 19 C -0.133 4.133 20 C -0.110 4.110 21 C -0.154 4.154 22 C -0.029 4.029 23 Cl -0.050 7.050 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.375 0.883 -19.709 19.732 hybrid contribution 0.706 0.249 0.698 1.023 sum 0.331 1.132 -19.011 19.047 Atomic orbital electron populations 1.21595 0.95640 1.00809 1.00086 1.21249 0.96121 0.99094 0.93385 0.92427 1.19126 0.95954 0.95576 0.90315 1.21172 1.34773 1.08346 0.90914 0.92590 1.25013 0.95283 0.95075 0.99083 1.69956 1.38916 1.21229 1.23527 0.86690 0.78923 0.80100 0.82480 1.20247 1.21366 1.20300 1.22512 0.98204 0.97235 0.88137 1.60226 1.53016 1.05684 1.01399 1.23216 0.92090 0.92669 0.99859 1.21698 0.99204 0.95575 0.97987 1.20863 0.96796 1.00419 0.96017 1.19668 0.92292 0.93552 0.92373 1.20648 0.99955 0.95889 0.96771 1.20857 0.96438 0.99445 0.94269 1.20897 0.95680 0.97428 1.01384 1.20229 0.90903 0.98343 0.93461 1.98353 1.40303 1.91875 1.74496 0.92789 0.93794 0.94072 0.96534 0.96890 0.93011 0.90937 0.94052 0.89499 0.88715 0.89544 0.89644 0.85079 0.84776 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.86 37.16 0.33 -2.02 16 2 C -0.08 -1.58 2.37 -90.62 -0.21 -1.79 16 3 H 0.06 1.14 6.92 -51.93 -0.36 0.79 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.16 8.48 -34.44 -0.29 -14.45 16 6 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.08 4.14 -3.83 -0.02 1.07 16 14 N -0.49 -7.27 4.31 -169.03 -0.73 -8.00 16 15 C 0.05 0.63 6.68 -2.43 -0.02 0.61 16 16 C -0.11 -1.29 6.70 -26.61 -0.18 -1.47 16 17 C -0.14 -1.82 6.10 -104.00 -0.63 -2.45 16 18 C 0.12 1.66 5.50 -83.41 -0.46 1.20 16 19 C -0.11 -1.39 10.04 -39.26 -0.39 -1.78 16 20 C -0.09 -0.94 10.02 -39.68 -0.40 -1.34 16 21 C -0.13 -1.43 9.84 -39.50 -0.39 -1.82 16 22 C 0.00 -0.03 6.31 -39.59 -0.25 -0.28 16 23 Cl -0.08 -0.88 28.77 -51.86 -1.49 -2.37 16 24 H 0.05 1.08 7.12 -51.93 -0.37 0.71 16 25 H 0.04 0.75 7.57 -51.93 -0.39 0.36 16 26 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 30 H 0.07 1.26 7.95 -51.93 -0.41 0.84 16 31 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.26 6.67 -51.93 -0.35 0.91 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 324.74 15.07 4.89 4.89 Total: -1.00 -29.50 324.74 -10.35 -39.85 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.60 Total: -2.41 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -3.13 Total: -22.44 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.01 Total: -33.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.49 Total: -2.37 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.50 -10.35 -39.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180750155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.721 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds