Wall clock time and date at job start Tue Mar 31 2020 01:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46764 * 2 1 4 4 C 1.53001 * 109.46912 * 119.99427 * 2 1 3 5 5 C 1.50699 * 109.47323 * 295.00101 * 4 2 1 6 6 H 1.08002 * 119.99917 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99808 * 180.02562 * 5 4 2 8 8 N 1.31519 * 120.00203 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00011 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47026 * 59.99909 * 9 7 5 11 11 H 1.48496 * 109.47013 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47018 * 300.00088 * 9 7 5 13 13 C 1.52994 * 109.47076 * 239.99580 * 2 1 3 14 14 N 1.46900 * 109.47126 * 63.80923 * 13 2 1 15 15 C 1.47903 * 111.00305 * 75.78425 * 14 13 2 16 16 C 1.54602 * 102.63613 * 94.67294 * 15 14 13 17 17 C 1.51580 * 102.81545 * 25.59405 * 16 15 14 18 18 C 1.38989 * 107.94842 * 343.82399 * 17 16 15 19 19 C 1.39372 * 119.09114 * 179.79145 * 18 17 16 20 20 C 1.37962 * 120.22598 * 359.78780 * 19 18 17 21 21 C 1.38241 * 120.27861 * 0.43446 * 20 19 18 22 22 C 1.37987 * 131.57007 * 163.71149 * 17 16 15 23 23 Cl 1.73595 * 119.97070 * 0.35464 * 22 17 16 24 24 H 1.09003 * 109.47097 * 305.41045 * 1 2 3 25 25 H 1.09000 * 109.47177 * 65.41888 * 1 2 3 26 26 H 1.09007 * 109.46830 * 185.41617 * 1 2 3 27 27 H 1.08997 * 109.46875 * 55.00564 * 4 2 1 28 28 H 1.09004 * 109.46684 * 175.00111 * 4 2 1 29 29 H 0.97000 * 119.99510 * 179.97438 * 8 7 5 30 30 H 1.08994 * 109.47582 * 303.80332 * 13 2 1 31 31 H 1.09001 * 109.46762 * 183.80298 * 13 2 1 32 32 H 1.08995 * 110.77970 * 212.95766 * 15 14 13 33 33 H 1.08998 * 110.77698 * 336.19676 * 15 14 13 34 34 H 1.08995 * 110.74576 * 143.92573 * 16 15 14 35 35 H 1.09001 * 110.74432 * 267.08231 * 16 15 14 36 36 H 1.07992 * 119.88743 * 179.97438 * 19 18 17 37 37 H 1.07998 * 119.85976 * 180.23902 * 20 19 18 38 38 H 1.08008 * 120.06634 * 179.68752 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9744 2.3756 7 6 1.9932 -0.4014 3.7283 8 7 2.6773 -1.5180 3.8512 9 14 1.4984 0.5630 5.2497 10 1 0.0184 0.6684 5.3092 11 1 1.9946 -0.1363 6.4621 12 1 2.0895 1.9239 5.1870 13 6 2.0400 -0.7213 -1.2491 14 7 1.6269 0.0222 -2.4469 15 6 2.4566 1.2325 -2.6319 16 6 3.5555 0.7440 -3.6035 17 6 2.8781 -0.4021 -4.3283 18 6 1.7544 -0.7673 -3.5964 19 6 0.9509 -1.8067 -4.0618 20 6 1.2687 -2.4580 -5.2357 21 6 2.3909 -2.0909 -5.9548 22 6 3.1957 -1.0607 -5.4985 23 17 4.6057 -0.5976 -6.3991 24 1 -0.3633 0.5955 0.8376 25 1 -0.3633 0.4275 -0.9345 26 1 -0.3633 -1.0232 0.0970 27 1 1.6054 -1.7197 1.2952 28 1 3.1264 -0.7993 1.2057 29 1 2.9251 -1.8404 4.7318 30 1 1.6222 -1.7274 -1.2839 31 1 3.1279 -0.7807 -1.2157 32 1 1.8732 2.0364 -3.0807 33 1 2.8892 1.5534 -1.6843 34 1 3.8316 1.5334 -4.3025 35 1 4.4292 0.3941 -3.0538 36 1 0.0750 -2.1013 -3.5030 37 1 0.6398 -3.2601 -5.5929 38 1 2.6392 -2.6065 -6.8708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180750155.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:02 Heat of formation + Delta-G solvation = -0.606337 kcal Electronic energy + Delta-G solvation = -19248.676863 eV Core-core repulsion = 16308.596820 eV Total energy + Delta-G solvation = -2940.080043 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86836 -38.57250 -37.34122 -36.50084 -34.37852 -32.75195 -30.58199 -29.84206 -28.72416 -27.06185 -24.90233 -24.09087 -22.43146 -22.11747 -20.39506 -18.58665 -17.78396 -17.30880 -16.63190 -16.52697 -16.37333 -15.43748 -15.34510 -15.07355 -14.60238 -14.34464 -14.12677 -13.86692 -13.46981 -13.27835 -13.09153 -12.87875 -12.74348 -12.61054 -12.53271 -12.25346 -12.21341 -12.10770 -12.02191 -11.88535 -11.47885 -11.09000 -11.07098 -10.52148 -10.36720 -9.66574 -8.92550 -8.16598 -6.25799 0.16336 0.22231 1.13480 1.41371 1.43739 1.51403 2.41882 2.51202 2.72908 3.17116 3.52023 3.73769 3.96745 4.01215 4.10701 4.27319 4.30754 4.40889 4.44709 4.48621 4.57302 4.71850 4.79624 4.86926 4.90028 4.98830 5.05465 5.19050 5.25814 5.32164 5.37911 5.46120 5.49854 5.54688 5.63854 5.79754 5.88437 5.91298 6.22258 6.31522 6.89851 7.42668 8.95241 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003575 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.753157 B = 7830.962576 C = 8080.264867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.069 4.069 3 H 0.058 0.942 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.079 3.921 14 N -0.490 5.490 15 C 0.046 3.954 16 C -0.102 4.102 17 C -0.148 4.148 18 C 0.089 3.911 19 C -0.120 4.120 20 C -0.085 4.085 21 C -0.129 4.129 22 C -0.016 4.016 23 Cl -0.073 7.073 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.035 0.965 27 H -0.010 1.010 28 H -0.014 1.014 29 H 0.262 0.738 30 H 0.066 0.934 31 H 0.030 0.970 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.168 0.832 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.846 1.285 -21.344 21.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.046 4.046 14 N -0.207 5.207 15 C -0.080 4.080 16 C -0.140 4.140 17 C -0.152 4.152 18 C -0.008 4.008 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.148 4.148 22 C -0.043 4.043 23 Cl -0.044 7.044 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.009 0.991 28 H 0.004 0.996 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.154 0.846 37 H 0.185 0.815 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.181 1.390 -21.147 21.226 hybrid contribution 0.983 0.036 1.028 1.423 sum -0.198 1.426 -20.119 20.170 Atomic orbital electron populations 1.21485 0.94591 1.00376 1.00629 1.21021 0.96800 0.98570 0.92377 0.92351 1.19003 0.94107 0.94686 0.92589 1.21590 1.34479 1.08635 0.91968 0.92012 1.25927 0.95230 0.96049 1.02583 1.70096 1.40222 1.22975 1.24320 0.85586 0.78955 0.78808 0.78233 1.19220 1.21126 1.19234 1.22146 0.97278 0.96800 0.88418 1.60175 1.53516 1.06026 1.00955 1.23282 0.92461 0.92386 0.99880 1.21659 0.98547 0.95859 0.97924 1.20986 0.96834 1.00828 0.96536 1.19821 0.93653 0.94932 0.92351 1.20919 0.99972 0.95531 0.97589 1.21236 0.96435 0.99491 0.93131 1.21284 0.95040 0.96493 1.01936 1.20434 0.91520 0.98847 0.93465 1.98353 1.39979 1.91900 1.74182 0.94140 0.91534 0.94604 0.99142 0.99578 0.92963 0.91545 0.95149 0.88065 0.89480 0.88035 0.90327 0.84627 0.81475 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.86 71.98 0.64 -3.63 16 2 C -0.07 -2.77 2.37 -10.79 -0.03 -2.79 16 3 H 0.06 2.34 6.92 -2.39 -0.02 2.32 16 4 C 0.03 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -29.60 8.48 25.60 0.22 -29.39 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 8 N -0.94 -57.00 13.29 21.45 0.28 -56.72 16 9 Si 0.96 44.19 29.54 68.60 2.03 46.21 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 C 0.08 2.74 4.14 86.30 0.36 3.09 16 14 N -0.49 -14.39 4.31 -688.69 -2.97 -17.36 16 15 C 0.05 1.18 6.68 86.66 0.58 1.76 16 16 C -0.10 -2.40 6.70 30.67 0.21 -2.19 16 17 C -0.15 -3.76 6.10 -19.46 -0.12 -3.88 16 18 C 0.09 2.42 5.50 38.28 0.21 2.63 16 19 C -0.12 -2.77 10.04 22.48 0.23 -2.54 16 20 C -0.08 -1.50 10.02 22.20 0.22 -1.28 16 21 C -0.13 -2.38 9.84 22.32 0.22 -2.16 16 22 C -0.02 -0.35 6.31 22.26 0.14 -0.21 16 23 Cl -0.07 -1.51 28.77 -2.72 -0.08 -1.58 16 24 H 0.04 1.60 7.12 -2.39 -0.02 1.59 16 25 H 0.07 2.19 7.57 -2.39 -0.02 2.17 16 26 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H -0.01 -0.80 8.14 -2.38 -0.02 -0.82 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.07 2.36 7.95 -2.39 -0.02 2.34 16 31 H 0.03 1.10 7.95 -2.39 -0.02 1.08 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.09 2.32 6.67 -2.39 -0.02 2.30 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -63.72 324.74 3.77 -59.95 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.04 Total: 7.77 kcal Atomic # 6 Polarization: -41.74 SS G_CDS: 3.47 Total: -38.28 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -2.68 Total: -74.07 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.58 kcal Total: -63.72 3.77 -59.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180750155.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.344 kcal (2) G-P(sol) polarization free energy of solvation -63.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds