Wall clock time and date at job start Tue Mar 31 2020 00:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 C 1.53000 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.37099 * 119.99672 * 89.99970 * 5 4 3 7 7 H 1.08001 * 120.00371 * 46.67254 * 6 5 4 8 8 C 1.38951 * 120.00369 * 226.67071 * 6 5 4 9 9 N 1.31415 * 120.00554 * 202.78514 * 8 6 5 10 10 Si 1.86805 * 119.99501 * 22.78127 * 8 6 5 11 11 H 1.48501 * 109.46952 * 85.58325 * 10 8 6 12 12 H 1.48504 * 109.46839 * 205.58321 * 10 8 6 13 13 H 1.48489 * 109.47321 * 325.58268 * 10 8 6 14 14 C 1.34775 * 120.00291 * 269.99941 * 5 4 3 15 15 O 1.21284 * 120.00078 * 5.49160 * 14 5 4 16 16 C 1.50702 * 119.99873 * 185.49169 * 14 5 4 17 17 H 1.08997 * 115.55388 * 269.54037 * 16 14 5 18 18 C 1.53006 * 117.49699 * 55.21156 * 16 14 5 19 19 C 1.53004 * 117.49673 * 123.83242 * 16 14 5 20 20 H 1.09000 * 117.49776 * 145.01985 * 19 16 14 21 21 C 1.53002 * 117.49893 * 359.97438 * 19 16 14 22 22 F 1.39904 * 109.46861 * 60.00408 * 21 19 16 23 23 F 1.39898 * 109.46858 * 180.02562 * 21 19 16 24 24 F 1.39898 * 109.47376 * 300.00398 * 21 19 16 25 25 H 1.08999 * 109.47657 * 300.00475 * 1 2 3 26 26 H 1.09003 * 109.46979 * 60.00294 * 1 2 3 27 27 H 1.09002 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46979 * 119.99706 * 2 1 3 29 29 H 1.09002 * 109.47233 * 239.99800 * 2 1 3 30 30 H 1.09003 * 109.46962 * 299.99716 * 3 2 1 31 31 H 1.09002 * 109.47239 * 59.99804 * 3 2 1 32 32 H 1.09003 * 109.46979 * 299.99706 * 4 3 2 33 33 H 1.09002 * 109.47233 * 59.99800 * 4 3 2 34 34 H 0.96997 * 119.99877 * 179.97438 * 9 8 6 35 35 H 1.09001 * 117.49426 * 214.97701 * 18 16 14 36 36 H 1.08998 * 117.50167 * 359.97343 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2863 3.4706 1.1871 7 1 4.8321 2.9748 1.9762 8 6 3.8151 4.7642 1.3751 9 7 4.3769 5.5446 2.2708 10 14 2.3830 5.3940 0.3543 11 1 1.1046 5.0002 0.9990 12 1 2.4549 6.8744 0.2610 13 1 2.4511 4.8083 -1.0085 14 6 4.2835 3.4584 -1.1674 15 8 3.9884 2.9235 -2.2152 16 6 4.9018 4.8327 -1.1709 17 1 4.1987 5.6647 -1.1334 18 6 6.2410 5.0065 -0.4516 19 6 6.1853 5.0277 -1.9805 20 1 6.3267 5.9883 -2.4760 21 6 6.7431 3.8125 -2.7241 22 9 5.7935 3.3514 -3.6422 23 9 7.9105 4.1769 -3.4035 24 9 7.0355 2.7979 -1.8064 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9329 0.9288 0.8909 33 1 3.9337 0.9285 -0.8891 34 1 4.0481 6.4477 2.4017 35 1 6.4190 5.9531 0.0587 36 1 6.6746 4.1271 0.0244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182321868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:01 Heat of formation + Delta-G solvation = -160.393585 kcal Electronic energy + Delta-G solvation = -23779.210568 eV Core-core repulsion = 19849.635725 eV Total energy + Delta-G solvation = -3929.574843 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.45711 -47.06994 -46.81566 -39.38166 -36.29915 -35.20496 -34.03021 -31.98483 -28.76567 -26.50861 -24.75906 -24.30240 -22.11093 -21.10903 -20.59296 -19.21869 -18.31703 -17.68229 -17.58551 -16.33881 -15.41828 -15.22330 -14.93791 -14.58851 -14.06100 -13.88232 -13.81450 -13.66293 -13.37883 -13.13149 -13.09043 -12.94941 -12.80053 -12.54633 -12.28051 -11.82614 -11.71846 -11.09234 -10.97131 -10.87258 -10.78935 -10.77908 -10.61079 -10.27481 -10.07721 -9.93701 -9.84143 -9.04563 -8.64178 -7.69009 -6.57952 -4.21635 2.99676 3.13054 3.24588 3.32007 3.57478 3.79503 4.06146 4.33138 4.44243 4.58459 4.81597 5.06291 5.26569 5.33354 5.37075 5.45355 5.50021 5.54090 5.81466 6.00526 6.08352 6.09837 6.17985 6.22741 6.27273 6.40659 6.45311 6.49629 6.66778 6.79460 6.91575 7.58669 7.68228 8.40365 8.90605 9.23320 9.66563 10.52162 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.008635 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.007313 B = 3242.009862 C = 4250.259554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.133 4.133 4 C 0.116 3.884 5 N -0.462 5.462 6 C -0.342 4.342 7 H 0.101 0.899 8 C 0.085 3.915 9 N -0.850 5.850 10 Si 0.841 3.159 11 H -0.275 1.275 12 H -0.279 1.279 13 H -0.253 1.253 14 C 0.506 3.494 15 O -0.575 6.575 16 C -0.126 4.126 17 H 0.118 0.882 18 C -0.086 4.086 19 C -0.233 4.233 20 H 0.140 0.860 21 C 0.481 3.519 22 F -0.162 7.162 23 F -0.194 7.194 24 F -0.180 7.180 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.275 0.725 35 H 0.112 0.888 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 -2.246 -3.891 4.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.172 4.172 4 C -0.007 4.007 5 N -0.183 5.183 6 C -0.469 4.469 7 H 0.118 0.882 8 C -0.124 4.124 9 N -0.484 5.484 10 Si 0.667 3.333 11 H -0.202 1.202 12 H -0.205 1.205 13 H -0.177 1.177 14 C 0.295 3.705 15 O -0.458 6.458 16 C -0.147 4.147 17 H 0.135 0.865 18 C -0.124 4.124 19 C -0.253 4.253 20 H 0.158 0.842 21 C 0.427 3.573 22 F -0.143 7.143 23 F -0.175 7.175 24 F -0.161 7.161 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.694 -2.390 -4.298 4.966 hybrid contribution -0.932 0.592 -0.420 1.182 sum -0.239 -1.798 -4.718 5.055 Atomic orbital electron populations 1.21761 0.96435 1.00847 1.01712 1.21450 0.95376 0.97335 1.01602 1.21940 0.96972 0.96012 1.02283 1.21430 0.92949 0.85116 1.01184 1.43670 1.57502 1.11831 1.05258 1.18946 1.36461 0.98120 0.93362 0.88165 1.25450 0.95835 0.95916 0.95184 1.69758 1.37756 1.07498 1.33399 0.87467 0.84850 0.78529 0.82501 1.20158 1.20498 1.17750 1.19345 0.81035 0.86118 0.84006 1.90619 1.55532 1.67945 1.31706 1.22114 0.91444 0.98603 1.02531 0.86487 1.22991 0.96710 1.05617 0.87033 1.23658 1.05957 0.97301 0.98349 0.84212 1.19524 0.75286 0.84542 0.77920 1.93284 1.63598 1.89864 1.67517 1.93119 1.51113 1.91795 1.81509 1.93154 1.93500 1.62958 1.66512 0.92889 0.93008 0.93242 0.92145 0.92254 0.92288 0.91668 0.91347 0.91726 0.91452 0.86938 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.78 5.93 -26.73 -0.16 -1.94 16 3 C -0.13 -2.50 5.54 -26.73 -0.15 -2.65 16 4 C 0.12 2.36 5.34 -4.04 -0.02 2.34 16 5 N -0.46 -10.71 2.05 -114.81 -0.24 -10.95 16 6 C -0.34 -8.29 8.28 -14.93 -0.12 -8.41 16 7 H 0.10 2.58 8.06 -52.49 -0.42 2.15 16 8 C 0.08 2.06 3.74 -17.47 -0.07 1.99 16 9 N -0.85 -21.20 13.96 55.50 0.77 -20.42 16 10 Si 0.84 19.44 24.56 -169.99 -4.17 15.26 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.25 -6.11 5.19 56.52 0.29 -5.82 16 14 C 0.51 12.05 3.49 -10.99 -0.04 12.01 16 15 O -0.57 -14.76 13.88 5.55 0.08 -14.68 16 16 C -0.13 -2.70 3.60 -91.77 -0.33 -3.03 16 17 H 0.12 2.50 4.79 -51.93 -0.25 2.25 16 18 C -0.09 -1.65 7.83 -26.73 -0.21 -1.86 16 19 C -0.23 -4.23 5.89 -90.61 -0.53 -4.76 16 20 H 0.14 2.07 8.14 -51.93 -0.42 1.65 16 21 C 0.48 9.24 2.88 37.16 0.11 9.35 16 22 F -0.16 -3.45 14.52 2.25 0.03 -3.42 16 23 F -0.19 -3.35 17.32 2.25 0.04 -3.31 16 24 F -0.18 -3.66 15.11 2.25 0.03 -3.63 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 33 H 0.06 1.33 7.50 -51.93 -0.39 0.94 16 34 H 0.28 6.51 8.31 -40.82 -0.34 6.18 16 35 H 0.11 2.00 8.14 -51.93 -0.42 1.57 16 36 H 0.12 2.42 6.93 -51.93 -0.36 2.06 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -27.13 300.15 -4.97 -32.10 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.89 Total: 3.09 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -1.15 Total: 1.43 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.54 Total: -31.37 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 9 Polarization: -10.46 SS G_CDS: 0.11 Total: -10.35 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.17 Total: 15.26 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.13 -4.97 -32.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182321868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.291 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds