Wall clock time and date at job start Tue Mar 31 2020 00:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47104 * 2 1 4 4 C 1.53000 * 109.47104 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.37099 * 119.99672 * 89.99970 * 5 4 3 7 7 H 1.08001 * 120.00371 * 46.67254 * 6 5 4 8 8 C 1.38951 * 120.00369 * 226.67071 * 6 5 4 9 9 N 1.31415 * 120.00554 * 202.78514 * 8 6 5 10 10 Si 1.86805 * 119.99501 * 22.78127 * 8 6 5 11 11 H 1.48501 * 109.46952 * 85.58325 * 10 8 6 12 12 H 1.48504 * 109.46839 * 205.58321 * 10 8 6 13 13 H 1.48489 * 109.47321 * 325.58268 * 10 8 6 14 14 C 1.34775 * 120.00291 * 269.99941 * 5 4 3 15 15 O 1.21284 * 120.00078 * 5.49160 * 14 5 4 16 16 C 1.50702 * 119.99873 * 185.49169 * 14 5 4 17 17 H 1.08997 * 115.55388 * 269.54037 * 16 14 5 18 18 C 1.53006 * 117.49699 * 55.21156 * 16 14 5 19 19 C 1.53004 * 117.49673 * 123.83242 * 16 14 5 20 20 H 1.09000 * 117.49776 * 145.01985 * 19 16 14 21 21 C 1.53002 * 117.49893 * 359.97438 * 19 16 14 22 22 F 1.39904 * 109.46861 * 60.00408 * 21 19 16 23 23 F 1.39898 * 109.46858 * 180.02562 * 21 19 16 24 24 F 1.39898 * 109.47376 * 300.00398 * 21 19 16 25 25 H 1.08999 * 109.47657 * 300.00475 * 1 2 3 26 26 H 1.09003 * 109.46979 * 60.00294 * 1 2 3 27 27 H 1.09002 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46979 * 119.99706 * 2 1 3 29 29 H 1.09002 * 109.47233 * 239.99800 * 2 1 3 30 30 H 1.09003 * 109.46962 * 299.99716 * 3 2 1 31 31 H 1.09002 * 109.47239 * 59.99804 * 3 2 1 32 32 H 1.09003 * 109.46979 * 299.99706 * 4 3 2 33 33 H 1.09002 * 109.47233 * 59.99800 * 4 3 2 34 34 H 0.96997 * 119.99877 * 179.97438 * 9 8 6 35 35 H 1.09001 * 117.49426 * 214.97701 * 18 16 14 36 36 H 1.08998 * 117.50167 * 359.97343 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2863 3.4706 1.1871 7 1 4.8321 2.9748 1.9762 8 6 3.8151 4.7642 1.3751 9 7 4.3769 5.5446 2.2708 10 14 2.3830 5.3940 0.3543 11 1 1.1046 5.0002 0.9990 12 1 2.4549 6.8744 0.2610 13 1 2.4511 4.8083 -1.0085 14 6 4.2835 3.4584 -1.1674 15 8 3.9884 2.9235 -2.2152 16 6 4.9018 4.8327 -1.1709 17 1 4.1987 5.6647 -1.1334 18 6 6.2410 5.0065 -0.4516 19 6 6.1853 5.0277 -1.9805 20 1 6.3267 5.9883 -2.4760 21 6 6.7431 3.8125 -2.7241 22 9 5.7935 3.3514 -3.6422 23 9 7.9105 4.1769 -3.4035 24 9 7.0355 2.7979 -1.8064 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9329 0.9288 0.8909 33 1 3.9337 0.9285 -0.8891 34 1 4.0481 6.4477 2.4017 35 1 6.4190 5.9531 0.0587 36 1 6.6746 4.1271 0.0244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182321868.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:00 Heat of formation + Delta-G solvation = -174.567726 kcal Electronic energy + Delta-G solvation = -23779.825205 eV Core-core repulsion = 19849.635725 eV Total energy + Delta-G solvation = -3930.189480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.99754 -48.57903 -48.41311 -41.14525 -37.87007 -36.95729 -35.58160 -33.80637 -30.25087 -28.04872 -26.60897 -25.87406 -23.62268 -22.59116 -22.01074 -21.03002 -19.92758 -19.26546 -19.19367 -18.06982 -17.12428 -16.93563 -16.53647 -16.12964 -15.67747 -15.59942 -15.35140 -15.24694 -14.92284 -14.72982 -14.63833 -14.63055 -14.30501 -14.15099 -13.72805 -13.40397 -13.31601 -12.80403 -12.65677 -12.55052 -12.32861 -12.14793 -11.95516 -11.94833 -11.64816 -11.53164 -11.43563 -10.90654 -10.47502 -9.54522 -8.50052 -6.14160 1.14069 1.27262 1.38337 1.78312 1.81518 2.13967 2.19596 2.71889 2.87525 2.93575 3.08182 3.49352 3.76063 3.87566 3.93241 4.03953 4.07867 4.26279 4.32921 4.47506 4.58185 4.69378 4.80104 4.91545 4.96107 4.96692 5.08080 5.09879 5.25078 5.36811 5.44974 5.71974 5.84468 6.46720 7.00818 7.36719 7.82243 8.63173 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.016342 B = 0.008635 C = 0.006586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.007313 B = 3242.009862 C = 4250.259554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.125 4.125 4 C 0.111 3.889 5 N -0.469 5.469 6 C -0.340 4.340 7 H 0.083 0.917 8 C 0.074 3.926 9 N -0.866 5.866 10 Si 0.877 3.123 11 H -0.284 1.284 12 H -0.264 1.264 13 H -0.271 1.271 14 C 0.499 3.501 15 O -0.601 6.601 16 C -0.158 4.158 17 H 0.118 0.882 18 C -0.076 4.076 19 C -0.209 4.209 20 H 0.181 0.819 21 C 0.478 3.522 22 F -0.176 7.176 23 F -0.180 7.180 24 F -0.190 7.190 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.281 0.719 35 H 0.129 0.871 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.824 -1.915 -3.967 4.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.163 4.163 4 C -0.012 4.012 5 N -0.189 5.189 6 C -0.467 4.467 7 H 0.101 0.899 8 C -0.134 4.134 9 N -0.501 5.501 10 Si 0.703 3.297 11 H -0.211 1.211 12 H -0.188 1.188 13 H -0.197 1.197 14 C 0.289 3.711 15 O -0.486 6.486 16 C -0.179 4.179 17 H 0.136 0.864 18 C -0.113 4.113 19 C -0.228 4.228 20 H 0.198 0.802 21 C 0.424 3.576 22 F -0.157 7.157 23 F -0.161 7.161 24 F -0.172 7.172 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.717 -2.054 -4.357 4.870 hybrid contribution -0.894 0.434 -0.398 1.070 sum -0.176 -1.620 -4.755 5.026 Atomic orbital electron populations 1.21752 0.95017 1.02411 1.01409 1.21430 0.96603 0.94546 1.02644 1.21845 0.95681 0.98439 1.00374 1.21591 0.94108 0.83921 1.01539 1.43816 1.57422 1.12714 1.04911 1.18748 1.36493 0.98306 0.93174 0.89943 1.25589 0.96405 0.95869 0.95540 1.69774 1.38316 1.08007 1.34050 0.86955 0.83124 0.78984 0.80663 1.21097 1.18821 1.19671 1.19776 0.80679 0.87026 0.83651 1.90589 1.56618 1.68952 1.32417 1.22102 0.92610 0.97214 1.05969 0.86402 1.22935 0.94756 1.05723 0.87917 1.23830 1.02773 0.98322 0.97882 0.80220 1.19711 0.75531 0.84623 0.77769 1.93257 1.64333 1.90108 1.68035 1.93146 1.50195 1.91575 1.81187 1.93136 1.93566 1.63594 1.66859 0.92925 0.93641 0.90736 0.90527 0.91761 0.94783 0.92821 0.89923 0.92291 0.90826 0.85251 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.68 9.91 71.98 0.71 -2.97 16 2 C -0.11 -3.24 5.93 30.59 0.18 -3.06 16 3 C -0.12 -4.67 5.54 30.59 0.17 -4.51 16 4 C 0.11 4.52 5.34 86.38 0.46 4.98 16 5 N -0.47 -21.79 2.05 -635.54 -1.31 -23.10 16 6 C -0.34 -16.47 8.28 84.04 0.70 -15.77 16 7 H 0.08 4.27 8.06 -2.91 -0.02 4.25 16 8 C 0.07 3.53 3.74 84.93 0.32 3.84 16 9 N -0.87 -42.22 13.96 21.66 0.30 -41.91 16 10 Si 0.88 39.54 24.56 68.60 1.68 41.22 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 H -0.27 -13.05 5.19 99.48 0.52 -12.53 16 14 C 0.50 23.73 3.49 87.66 0.31 24.03 16 15 O -0.60 -31.06 13.88 -3.04 -0.04 -31.10 16 16 C -0.16 -6.59 3.60 -11.54 -0.04 -6.63 16 17 H 0.12 4.87 4.79 -2.39 -0.01 4.85 16 18 C -0.08 -2.79 7.83 30.60 0.24 -2.55 16 19 C -0.21 -7.12 5.89 -10.79 -0.06 -7.18 16 20 H 0.18 4.63 8.14 -2.39 -0.02 4.61 16 21 C 0.48 17.66 2.88 71.98 0.21 17.87 16 22 F -0.18 -7.41 14.52 44.97 0.65 -6.76 16 23 F -0.18 -5.81 17.32 44.97 0.78 -5.03 16 24 F -0.19 -7.63 15.11 44.97 0.68 -6.95 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 32 H 0.08 3.07 8.04 -2.39 -0.02 3.05 16 33 H 0.06 2.45 7.50 -2.39 -0.02 2.43 16 34 H 0.28 12.89 8.31 -92.71 -0.77 12.11 16 35 H 0.13 4.28 8.14 -2.39 -0.02 4.26 16 36 H 0.10 4.14 6.93 -2.39 -0.02 4.12 16 Total: -1.00 -57.01 300.15 6.83 -50.18 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.90 Total: 15.39 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 3.19 Total: 8.07 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -1.00 Total: -65.01 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.04 Total: -31.10 kcal Atomic # 9 Polarization: -20.85 SS G_CDS: 2.11 Total: -18.74 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 1.68 Total: 41.22 kcal Total: -57.01 6.83 -50.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182321868.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.391 kcal (2) G-P(sol) polarization free energy of solvation -57.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds