Wall clock time and date at job start Tue Mar 31 2020 00:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 C 1.52995 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47349 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99512 * 264.53722 * 5 4 3 7 7 H 1.08007 * 119.99465 * 145.95280 * 6 5 4 8 8 C 1.38943 * 120.00283 * 325.94978 * 6 5 4 9 9 N 1.31407 * 120.00047 * 337.86408 * 8 6 5 10 10 Si 1.86803 * 119.99932 * 157.85643 * 8 6 5 11 11 H 1.48505 * 109.46924 * 90.00289 * 10 8 6 12 12 H 1.48500 * 109.47392 * 210.00036 * 10 8 6 13 13 H 1.48497 * 109.47408 * 330.00381 * 10 8 6 14 14 C 1.34770 * 120.00264 * 84.53207 * 5 4 3 15 15 O 1.21302 * 119.99814 * 0.02562 * 14 5 4 16 16 C 1.50697 * 120.00113 * 180.02562 * 14 5 4 17 17 H 1.09001 * 115.55114 * 325.58306 * 16 14 5 18 18 C 1.53000 * 117.50057 * 111.25986 * 16 14 5 19 19 C 1.53005 * 117.50018 * 179.91887 * 16 14 5 20 20 H 1.08997 * 117.49538 * 359.97438 * 19 16 14 21 21 C 1.52989 * 117.50375 * 144.99719 * 19 16 14 22 22 F 1.39899 * 109.47244 * 59.99487 * 21 19 16 23 23 F 1.39897 * 109.47517 * 179.97438 * 21 19 16 24 24 F 1.39908 * 109.47079 * 300.00185 * 21 19 16 25 25 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47386 * 300.00074 * 1 2 3 27 27 H 1.09002 * 109.46692 * 60.00061 * 1 2 3 28 28 H 1.08994 * 109.47386 * 239.99926 * 2 1 3 29 29 H 1.08996 * 109.46999 * 119.99627 * 2 1 3 30 30 H 1.09003 * 109.47145 * 59.99951 * 3 2 1 31 31 H 1.09002 * 109.46830 * 300.00104 * 3 2 1 32 32 H 1.08994 * 109.47369 * 59.99861 * 4 3 2 33 33 H 1.09002 * 109.47307 * 299.99757 * 4 3 2 34 34 H 0.96999 * 119.99901 * 180.02562 * 9 8 6 35 35 H 1.08998 * 117.49573 * 214.98357 * 18 16 14 36 36 H 1.09001 * 117.49504 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3929 3.4330 -1.1818 7 1 4.2223 4.4917 -1.3107 8 6 4.9515 2.6886 -2.2134 9 7 5.5553 1.5514 -1.9508 10 14 4.8438 3.3042 -3.9738 11 1 6.0272 4.1489 -4.2760 12 1 4.8125 2.1458 -4.9024 13 1 3.6063 4.1074 -4.1426 14 6 4.1786 3.4956 1.1621 15 8 3.8830 2.9564 2.2077 16 6 4.6804 4.9165 1.1627 17 1 5.4311 5.1503 0.4077 18 6 3.6846 6.0173 1.5333 19 6 4.7928 5.6256 2.5138 20 1 4.5034 5.0644 3.4023 21 6 5.9501 6.6084 2.7019 22 9 5.8508 7.6326 1.7540 23 9 5.8923 7.1565 3.9877 24 9 7.1653 5.9354 2.5354 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 5.9456 1.0319 -2.6710 35 1 3.7802 6.9754 1.0224 36 1 2.6663 5.7137 1.7764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182321869.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:04 Heat of formation + Delta-G solvation = -178.335576 kcal Electronic energy + Delta-G solvation = -22523.299713 eV Core-core repulsion = 18592.946848 eV Total energy + Delta-G solvation = -3930.352866 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.84327 -47.40073 -47.30035 -39.11004 -36.52886 -34.97419 -34.00163 -31.58736 -28.72211 -26.81003 -25.02050 -24.10262 -21.97684 -21.31890 -20.40745 -19.16140 -18.39564 -18.08417 -17.40770 -16.84460 -15.77291 -14.82242 -14.68268 -14.62078 -14.21633 -14.20937 -13.96068 -13.78428 -13.54108 -13.50634 -13.43543 -13.21072 -12.69098 -12.26082 -12.11395 -11.92231 -11.44261 -11.40410 -11.27503 -11.02114 -10.66396 -10.58198 -10.42488 -10.39892 -10.31407 -10.09663 -9.77621 -9.17480 -8.59145 -7.62781 -6.47819 -4.13974 2.95436 3.03005 3.16562 3.19945 3.31085 3.92565 3.94727 4.06820 4.26530 4.65131 4.76559 4.93370 5.06906 5.24266 5.42545 5.45754 5.59763 5.63728 5.84396 6.01801 6.10122 6.20148 6.21858 6.33233 6.37383 6.42503 6.56020 6.68585 6.79734 7.06368 7.29106 7.41554 7.81143 8.27617 8.96826 9.39525 9.82392 10.53314 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.006009 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.191851 B = 4658.538316 C = 5897.317640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.114 3.886 5 N -0.425 5.425 6 C -0.344 4.344 7 H 0.093 0.907 8 C 0.045 3.955 9 N -0.853 5.853 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.490 3.510 15 O -0.604 6.604 16 C -0.116 4.116 17 H 0.133 0.867 18 C -0.130 4.130 19 C -0.215 4.215 20 H 0.152 0.848 21 C 0.486 3.514 22 F -0.184 7.184 23 F -0.184 7.184 24 F -0.178 7.178 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.271 0.729 35 H 0.111 0.889 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.619 4.999 2.627 6.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.166 4.166 4 C -0.009 4.009 5 N -0.141 5.141 6 C -0.471 4.471 7 H 0.110 0.890 8 C -0.161 4.161 9 N -0.489 5.489 10 Si 0.738 3.262 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.192 1.192 14 C 0.279 3.721 15 O -0.491 6.491 16 C -0.137 4.137 17 H 0.151 0.849 18 C -0.168 4.168 19 C -0.235 4.235 20 H 0.170 0.830 21 C 0.431 3.569 22 F -0.166 7.166 23 F -0.166 7.166 24 F -0.160 7.160 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.129 0.871 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.624 4.558 2.992 6.547 hybrid contribution 0.347 0.431 -0.932 1.084 sum -3.277 4.989 2.060 6.314 Atomic orbital electron populations 1.21756 0.96606 1.00709 1.01475 1.21427 0.95001 0.97682 1.01642 1.21903 0.97757 0.95604 1.01385 1.21482 0.91193 0.84474 1.03774 1.43373 1.54080 1.11900 1.04736 1.19454 1.41770 0.95488 0.90425 0.88968 1.25347 0.94000 0.96268 1.00534 1.69942 1.30692 1.14878 1.33360 0.86172 0.79115 0.78669 0.82221 1.20128 1.20622 1.19196 1.19187 0.82148 0.86830 0.83975 1.90536 1.56517 1.70177 1.31863 1.22227 1.02903 0.93897 0.94701 0.84936 1.23080 0.95188 0.99537 0.98969 1.23374 0.97597 1.02573 0.99913 0.83019 1.19611 0.83706 0.80274 0.73261 1.93140 1.96199 1.62040 1.65206 1.93153 1.96572 1.87005 1.39864 1.93206 1.47588 1.80063 1.95127 0.93398 0.93079 0.93039 0.92230 0.92377 0.92819 0.92306 0.87372 0.92918 0.91842 0.87095 0.87153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.52 5.50 -26.73 -0.15 -2.67 16 4 C 0.11 2.64 4.90 -4.04 -0.02 2.62 16 5 N -0.43 -10.33 2.56 -114.81 -0.29 -10.62 16 6 C -0.34 -8.33 8.44 -14.94 -0.13 -8.46 16 7 H 0.09 2.12 7.15 -52.48 -0.38 1.75 16 8 C 0.05 1.10 4.92 -17.47 -0.09 1.01 16 9 N -0.85 -21.73 11.34 55.50 0.63 -21.10 16 10 Si 0.91 18.69 29.61 -169.99 -5.03 13.66 16 11 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 13 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 14 C 0.49 11.53 7.38 -10.99 -0.08 11.45 16 15 O -0.60 -15.36 15.93 5.54 0.09 -15.27 16 16 C -0.12 -2.25 4.64 -91.77 -0.43 -2.68 16 17 H 0.13 2.62 7.39 -51.93 -0.38 2.23 16 18 C -0.13 -2.02 9.63 -26.69 -0.26 -2.28 16 19 C -0.21 -3.59 5.41 -90.59 -0.49 -4.08 16 20 H 0.15 2.61 7.67 -51.93 -0.40 2.21 16 21 C 0.49 7.63 3.36 37.15 0.12 7.76 16 22 F -0.18 -2.79 15.90 2.25 0.04 -2.76 16 23 F -0.18 -2.77 17.32 2.25 0.04 -2.73 16 24 F -0.18 -3.07 17.27 2.25 0.04 -3.03 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.11 2.65 5.36 -51.93 -0.28 2.37 16 33 H 0.05 1.28 7.59 -51.93 -0.39 0.89 16 34 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 35 H 0.11 1.49 7.22 -51.93 -0.38 1.11 16 36 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 317.08 15.07 4.78 4.78 Total: -1.00 -26.92 317.08 -5.74 -32.65 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.72 Total: 5.51 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.30 Total: -1.10 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.34 Total: -31.72 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.11 Total: -8.52 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.92 -5.74 -32.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182321869.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.682 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds