Wall clock time and date at job start Tue Mar 31 2020 00:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47002 * 2 1 4 4 C 1.52995 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47349 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99512 * 264.53722 * 5 4 3 7 7 H 1.08007 * 119.99465 * 145.95280 * 6 5 4 8 8 C 1.38943 * 120.00283 * 325.94978 * 6 5 4 9 9 N 1.31407 * 120.00047 * 337.86408 * 8 6 5 10 10 Si 1.86803 * 119.99932 * 157.85643 * 8 6 5 11 11 H 1.48505 * 109.46924 * 90.00289 * 10 8 6 12 12 H 1.48500 * 109.47392 * 210.00036 * 10 8 6 13 13 H 1.48497 * 109.47408 * 330.00381 * 10 8 6 14 14 C 1.34770 * 120.00264 * 84.53207 * 5 4 3 15 15 O 1.21302 * 119.99814 * 0.02562 * 14 5 4 16 16 C 1.50697 * 120.00113 * 180.02562 * 14 5 4 17 17 H 1.09001 * 115.55114 * 325.58306 * 16 14 5 18 18 C 1.53000 * 117.50057 * 111.25986 * 16 14 5 19 19 C 1.53005 * 117.50018 * 179.91887 * 16 14 5 20 20 H 1.08997 * 117.49538 * 359.97438 * 19 16 14 21 21 C 1.52989 * 117.50375 * 144.99719 * 19 16 14 22 22 F 1.39899 * 109.47244 * 59.99487 * 21 19 16 23 23 F 1.39897 * 109.47517 * 179.97438 * 21 19 16 24 24 F 1.39908 * 109.47079 * 300.00185 * 21 19 16 25 25 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47386 * 300.00074 * 1 2 3 27 27 H 1.09002 * 109.46692 * 60.00061 * 1 2 3 28 28 H 1.08994 * 109.47386 * 239.99926 * 2 1 3 29 29 H 1.08996 * 109.46999 * 119.99627 * 2 1 3 30 30 H 1.09003 * 109.47145 * 59.99951 * 3 2 1 31 31 H 1.09002 * 109.46830 * 300.00104 * 3 2 1 32 32 H 1.08994 * 109.47369 * 59.99861 * 4 3 2 33 33 H 1.09002 * 109.47307 * 299.99757 * 4 3 2 34 34 H 0.96999 * 119.99901 * 180.02562 * 9 8 6 35 35 H 1.08998 * 117.49573 * 214.98357 * 18 16 14 36 36 H 1.09001 * 117.49504 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3929 3.4330 -1.1818 7 1 4.2223 4.4917 -1.3107 8 6 4.9515 2.6886 -2.2134 9 7 5.5553 1.5514 -1.9508 10 14 4.8438 3.3042 -3.9738 11 1 6.0272 4.1489 -4.2760 12 1 4.8125 2.1458 -4.9024 13 1 3.6063 4.1074 -4.1426 14 6 4.1786 3.4956 1.1621 15 8 3.8830 2.9564 2.2077 16 6 4.6804 4.9165 1.1627 17 1 5.4311 5.1503 0.4077 18 6 3.6846 6.0173 1.5333 19 6 4.7928 5.6256 2.5138 20 1 4.5034 5.0644 3.4023 21 6 5.9501 6.6084 2.7019 22 9 5.8508 7.6326 1.7540 23 9 5.8923 7.1565 3.9877 24 9 7.1653 5.9354 2.5354 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9287 0.8891 34 1 5.9456 1.0319 -2.6710 35 1 3.7802 6.9754 1.0224 36 1 2.6663 5.7137 1.7764 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182321869.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:03 Heat of formation + Delta-G solvation = -191.052975 kcal Electronic energy + Delta-G solvation = -22523.851181 eV Core-core repulsion = 18592.946848 eV Total energy + Delta-G solvation = -3930.904334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.11723 -48.63718 -48.60936 -40.85054 -38.08806 -36.70618 -35.55334 -33.43741 -30.26297 -28.16895 -26.86230 -25.59674 -23.45361 -22.65361 -21.92315 -20.94777 -19.76550 -19.38581 -18.78804 -18.49517 -17.52216 -16.56949 -16.35114 -16.08609 -15.66690 -15.55375 -15.49546 -15.05187 -14.99114 -14.83536 -14.77153 -14.59117 -14.14531 -13.84809 -13.67372 -13.36690 -13.08166 -12.95867 -12.69930 -12.65509 -12.17962 -12.06380 -11.98522 -11.84034 -11.80400 -11.57850 -11.42414 -10.99130 -10.43742 -9.51316 -8.32299 -6.04717 1.38521 1.50137 1.60908 1.63838 1.75017 2.29857 2.39394 2.62956 2.91758 3.01373 3.19537 3.40642 3.65975 3.84384 4.04171 4.10015 4.23451 4.30841 4.41553 4.56571 4.64754 4.84987 4.86838 4.88533 4.95965 5.00294 5.08187 5.18947 5.36833 5.43486 5.46090 5.57589 5.97339 6.40991 7.09927 7.54753 7.97788 8.70093 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.006009 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.191851 B = 4658.538316 C = 5897.317640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.114 4.114 4 C 0.114 3.886 5 N -0.439 5.439 6 C -0.356 4.356 7 H 0.104 0.896 8 C 0.004 3.996 9 N -0.889 5.889 10 Si 0.980 3.020 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.258 1.258 14 C 0.479 3.521 15 O -0.633 6.633 16 C -0.143 4.143 17 H 0.128 0.872 18 C -0.098 4.098 19 C -0.207 4.207 20 H 0.146 0.854 21 C 0.494 3.506 22 F -0.177 7.177 23 F -0.177 7.177 24 F -0.189 7.189 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.273 0.727 35 H 0.140 0.860 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.708 6.373 1.836 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.009 4.009 5 N -0.155 5.155 6 C -0.483 4.483 7 H 0.121 0.879 8 C -0.199 4.199 9 N -0.525 5.525 10 Si 0.803 3.197 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.181 1.181 14 C 0.269 3.731 15 O -0.522 6.522 16 C -0.164 4.164 17 H 0.145 0.855 18 C -0.136 4.136 19 C -0.227 4.227 20 H 0.163 0.837 21 C 0.440 3.560 22 F -0.158 7.158 23 F -0.159 7.159 24 F -0.170 7.170 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.718 5.945 2.202 7.903 hybrid contribution 0.729 -0.013 -0.613 0.952 sum -3.989 5.932 1.589 7.323 Atomic orbital electron populations 1.21707 0.94047 1.02343 1.01848 1.21414 0.97196 0.95200 1.01659 1.21761 0.95101 0.97821 1.00563 1.21447 0.93471 0.84248 1.01752 1.43649 1.54320 1.12174 1.05309 1.19802 1.41845 0.96170 0.90508 0.87866 1.26184 0.93332 0.96323 1.04095 1.70046 1.31749 1.16232 1.34513 0.85143 0.79327 0.78025 0.77194 1.19841 1.20750 1.18149 1.19853 0.81515 0.88454 0.83317 1.90499 1.57767 1.71323 1.32645 1.22013 1.05154 0.92535 0.96692 0.85452 1.23259 0.94691 0.98817 0.96797 1.23332 0.98544 1.02182 0.98598 0.83664 1.19368 0.82856 0.80150 0.73618 1.93154 1.96105 1.61592 1.64972 1.93170 1.96481 1.86818 1.39398 1.93191 1.48211 1.80400 1.95221 0.91161 0.92907 0.92475 0.92065 0.92574 0.93973 0.92478 0.88764 0.95318 0.91736 0.84195 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.92 16 2 C -0.12 -3.77 5.93 30.60 0.18 -3.59 16 3 C -0.11 -4.54 5.50 30.59 0.17 -4.37 16 4 C 0.11 5.47 4.90 86.38 0.42 5.90 16 5 N -0.44 -21.76 2.56 -635.54 -1.63 -23.38 16 6 C -0.36 -17.27 8.44 84.04 0.71 -16.56 16 7 H 0.10 4.66 7.15 -2.91 -0.02 4.64 16 8 C 0.00 0.20 4.92 84.93 0.42 0.62 16 9 N -0.89 -46.04 11.34 21.66 0.25 -45.80 16 10 Si 0.98 37.80 29.61 68.60 2.03 39.83 16 11 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 12 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 13 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 14 C 0.48 22.90 7.38 87.66 0.65 23.55 16 15 O -0.63 -33.03 15.93 -3.10 -0.05 -33.08 16 16 C -0.14 -5.46 4.64 -11.54 -0.05 -5.52 16 17 H 0.13 4.98 7.39 -2.39 -0.02 4.96 16 18 C -0.10 -2.82 9.63 30.62 0.29 -2.53 16 19 C -0.21 -6.64 5.41 -10.77 -0.06 -6.70 16 20 H 0.15 4.91 7.67 -2.39 -0.02 4.89 16 21 C 0.49 14.68 3.36 71.98 0.24 14.93 16 22 F -0.18 -4.91 15.90 44.97 0.71 -4.19 16 23 F -0.18 -4.97 17.32 44.97 0.78 -4.20 16 24 F -0.19 -6.33 17.27 44.97 0.78 -5.55 16 25 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.09 4.78 5.36 -2.39 -0.01 4.77 16 33 H 0.03 1.46 7.59 -2.39 -0.02 1.44 16 34 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 35 H 0.14 3.23 7.22 -2.39 -0.02 3.21 16 36 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -58.22 317.08 7.65 -50.57 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: 1.09 Total: 22.99 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 3.69 Total: 2.81 kcal Atomic # 7 Polarization: -67.80 SS G_CDS: -1.38 Total: -69.18 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.05 Total: -33.08 kcal Atomic # 9 Polarization: -16.21 SS G_CDS: 2.27 Total: -13.94 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.83 kcal Total: -58.22 7.65 -50.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182321869.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.483 kcal (2) G-P(sol) polarization free energy of solvation -58.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds