Wall clock time and date at job start Tue Mar 31 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47163 * 2 1 4 4 C 1.53003 * 109.46937 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46808 * 179.97438 * 4 3 2 6 6 C 1.37089 * 119.99789 * 265.20361 * 5 4 3 7 7 H 1.08003 * 119.99751 * 145.22903 * 6 5 4 8 8 C 1.38952 * 120.00388 * 325.22585 * 6 5 4 9 9 N 1.31410 * 119.99899 * 338.92973 * 8 6 5 10 10 Si 1.86797 * 120.00324 * 158.92974 * 8 6 5 11 11 H 1.48500 * 109.46921 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47553 * 119.99830 * 10 8 6 13 13 H 1.48498 * 109.46982 * 240.00255 * 10 8 6 14 14 C 1.34777 * 119.99683 * 85.20802 * 5 4 3 15 15 O 1.21285 * 120.00406 * 359.97438 * 14 5 4 16 16 C 1.50705 * 119.99651 * 179.97438 * 14 5 4 17 17 H 1.09008 * 115.55987 * 34.31270 * 16 14 5 18 18 C 1.52998 * 117.49994 * 248.62314 * 16 14 5 19 19 C 1.53000 * 117.49750 * 179.97438 * 16 14 5 20 20 H 1.08991 * 117.49713 * 0.02562 * 19 16 14 21 21 C 1.53001 * 117.49706 * 215.00105 * 19 16 14 22 22 F 1.39903 * 109.47167 * 60.00350 * 21 19 16 23 23 F 1.39897 * 109.46703 * 180.02562 * 21 19 16 24 24 F 1.39900 * 109.47281 * 300.00442 * 21 19 16 25 25 H 1.09002 * 109.46587 * 300.00388 * 1 2 3 26 26 H 1.09004 * 109.47042 * 59.99661 * 1 2 3 27 27 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46836 * 240.00255 * 2 1 3 29 29 H 1.08994 * 109.47120 * 120.00123 * 2 1 3 30 30 H 1.08995 * 109.47432 * 60.00011 * 3 2 1 31 31 H 1.09004 * 109.47418 * 300.00108 * 3 2 1 32 32 H 1.08996 * 109.47175 * 60.00185 * 4 3 2 33 33 H 1.08999 * 109.47145 * 299.99429 * 4 3 2 34 34 H 0.96995 * 120.00244 * 179.97438 * 9 8 6 35 35 H 1.09005 * 117.49645 * 359.97438 * 18 16 14 36 36 H 1.08996 * 117.49974 * 145.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.3800 3.4365 -1.1847 7 1 4.1971 4.4932 -1.3127 8 6 4.9412 2.6981 -2.2194 9 7 5.5406 1.5572 -1.9625 10 14 4.8437 3.3272 -3.9755 11 1 4.1232 4.6256 -3.9969 12 1 6.2160 3.5144 -4.5113 13 1 4.1148 2.3422 -4.8144 14 6 4.1916 3.4918 1.1616 15 8 3.9067 2.9498 2.2086 16 6 4.6945 4.9125 1.1610 17 1 4.3944 5.5173 0.3052 18 6 6.0785 5.1723 1.7592 19 6 4.8230 5.6169 2.5131 20 1 4.5443 5.0527 3.4030 21 6 4.5207 7.1160 2.5602 22 9 3.2014 7.3388 2.1513 23 9 4.6897 7.5849 3.8674 24 9 5.3949 7.7952 1.7049 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 5.9320 1.0416 -2.6848 35 1 6.6252 4.3156 2.1535 36 1 6.6890 5.9479 1.2970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182321870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:08 Heat of formation + Delta-G solvation = -177.929845 kcal Electronic energy + Delta-G solvation = -22532.234729 eV Core-core repulsion = 18601.899457 eV Total energy + Delta-G solvation = -3930.335272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -49.86802 -47.41554 -47.33924 -39.11061 -36.52048 -34.97648 -33.99242 -31.57770 -28.71712 -26.80603 -25.01517 -24.13956 -21.95278 -21.30861 -20.38026 -19.19958 -18.40370 -18.11631 -17.42856 -16.81883 -15.81389 -14.81021 -14.68129 -14.56027 -14.24749 -14.22319 -14.04292 -13.80907 -13.57039 -13.53131 -13.35728 -13.25923 -12.67505 -12.27020 -12.06565 -11.88574 -11.44388 -11.37722 -11.29619 -11.09096 -10.62952 -10.56240 -10.48294 -10.35946 -10.21582 -10.09281 -9.74882 -9.18106 -8.60071 -7.62355 -6.46528 -4.14913 2.94130 3.03689 3.17304 3.20557 3.33513 3.85627 3.96626 4.08575 4.25622 4.71015 4.73390 4.88513 5.07940 5.30432 5.46593 5.47839 5.57668 5.64827 5.89600 6.02825 6.10692 6.20470 6.23087 6.33933 6.37203 6.43636 6.57126 6.69386 6.81256 7.06981 7.29590 7.42430 7.81561 8.26853 8.97202 9.38776 9.81447 10.54495 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.006103 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.110210 B = 4586.826144 C = 5781.715832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.129 4.129 4 C 0.114 3.886 5 N -0.426 5.426 6 C -0.341 4.341 7 H 0.092 0.908 8 C 0.046 3.954 9 N -0.856 5.856 10 Si 0.913 3.087 11 H -0.267 1.267 12 H -0.280 1.280 13 H -0.278 1.278 14 C 0.492 3.508 15 O -0.603 6.603 16 C -0.115 4.115 17 H 0.127 0.873 18 C -0.120 4.120 19 C -0.219 4.219 20 H 0.152 0.848 21 C 0.485 3.515 22 F -0.181 7.181 23 F -0.184 7.184 24 F -0.184 7.184 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.270 0.730 35 H 0.112 0.888 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.055 4.490 2.897 5.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.167 4.167 4 C -0.009 4.009 5 N -0.142 5.142 6 C -0.469 4.469 7 H 0.109 0.891 8 C -0.161 4.161 9 N -0.492 5.492 10 Si 0.739 3.261 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.280 3.720 15 O -0.490 6.490 16 C -0.136 4.136 17 H 0.145 0.855 18 C -0.157 4.157 19 C -0.239 4.239 20 H 0.170 0.830 21 C 0.431 3.569 22 F -0.162 7.162 23 F -0.166 7.166 24 F -0.165 7.165 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.105 4.075 3.259 5.627 hybrid contribution -0.083 0.582 -0.995 1.156 sum -2.188 4.657 2.264 5.622 Atomic orbital electron populations 1.21759 0.96606 1.00694 1.01508 1.21422 0.95012 0.97666 1.01608 1.21909 0.97765 0.95610 1.01449 1.21495 0.91205 0.84454 1.03782 1.43385 1.54153 1.12023 1.04601 1.19481 1.41544 0.95701 0.90185 0.89064 1.25321 0.94068 0.96263 1.00432 1.69923 1.31394 1.14819 1.33085 0.86100 0.78222 0.79310 0.82486 1.19079 1.20634 1.20405 1.19243 0.81940 0.86729 0.84050 1.90533 1.56630 1.69995 1.31834 1.22163 1.00627 0.97238 0.93602 0.85543 1.23025 0.89699 1.03218 0.99808 1.23425 1.09072 0.89312 1.02100 0.83016 1.19637 0.74050 0.90127 0.73048 1.93188 1.36898 1.95786 1.90355 1.93154 1.95218 1.90486 1.37695 1.93145 1.69648 1.82644 1.71087 0.93064 0.93027 0.93404 0.92239 0.92394 0.92791 0.92293 0.87291 0.92926 0.91947 0.86981 0.87051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.97 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.58 5.51 -26.73 -0.15 -2.72 16 4 C 0.11 2.64 4.91 -4.04 -0.02 2.62 16 5 N -0.43 -10.34 2.55 -114.81 -0.29 -10.63 16 6 C -0.34 -8.28 8.72 -14.94 -0.13 -8.41 16 7 H 0.09 2.12 6.52 -52.48 -0.34 1.78 16 8 C 0.05 1.10 4.95 -17.47 -0.09 1.01 16 9 N -0.86 -21.62 11.31 55.50 0.63 -20.99 16 10 Si 0.91 18.74 29.60 -169.99 -5.03 13.71 16 11 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 12 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 13 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 14 C 0.49 11.56 7.39 -10.98 -0.08 11.48 16 15 O -0.60 -15.31 15.92 5.55 0.09 -15.22 16 16 C -0.12 -2.23 4.94 -91.77 -0.45 -2.69 16 17 H 0.13 2.39 6.75 -51.92 -0.35 2.04 16 18 C -0.12 -1.96 9.63 -26.71 -0.26 -2.22 16 19 C -0.22 -3.65 5.41 -90.59 -0.49 -4.14 16 20 H 0.15 2.60 7.67 -51.93 -0.40 2.20 16 21 C 0.49 7.48 3.36 37.16 0.12 7.60 16 22 F -0.18 -2.96 17.27 2.25 0.04 -2.92 16 23 F -0.18 -2.73 17.32 2.25 0.04 -2.69 16 24 F -0.18 -2.76 15.90 2.25 0.04 -2.73 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.11 2.66 5.35 -51.93 -0.28 2.39 16 33 H 0.05 1.27 7.57 -51.93 -0.39 0.88 16 34 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 35 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.11 1.60 7.22 -51.93 -0.38 1.22 16 LS Contribution 316.36 15.07 4.77 4.77 Total: -1.00 -26.71 316.36 -5.71 -32.42 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -4.65 Total: 5.59 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.33 Total: -1.31 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.33 Total: -31.62 kcal Atomic # 8 Polarization: -15.31 SS G_CDS: 0.09 Total: -15.22 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 0.11 Total: -8.34 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.71 -5.71 -32.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182321870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.513 kcal (2) G-P(sol) polarization free energy of solvation -26.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds