Wall clock time and date at job start Tue Mar 31 2020 00:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47163 * 2 1 4 4 C 1.53003 * 109.46937 * 180.02562 * 3 2 1 5 5 N 1.46508 * 109.46808 * 179.97438 * 4 3 2 6 6 C 1.37089 * 119.99789 * 265.20361 * 5 4 3 7 7 H 1.08003 * 119.99751 * 145.22903 * 6 5 4 8 8 C 1.38952 * 120.00388 * 325.22585 * 6 5 4 9 9 N 1.31410 * 119.99899 * 338.92973 * 8 6 5 10 10 Si 1.86797 * 120.00324 * 158.92974 * 8 6 5 11 11 H 1.48500 * 109.46921 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47553 * 119.99830 * 10 8 6 13 13 H 1.48498 * 109.46982 * 240.00255 * 10 8 6 14 14 C 1.34777 * 119.99683 * 85.20802 * 5 4 3 15 15 O 1.21285 * 120.00406 * 359.97438 * 14 5 4 16 16 C 1.50705 * 119.99651 * 179.97438 * 14 5 4 17 17 H 1.09008 * 115.55987 * 34.31270 * 16 14 5 18 18 C 1.52998 * 117.49994 * 248.62314 * 16 14 5 19 19 C 1.53000 * 117.49750 * 179.97438 * 16 14 5 20 20 H 1.08991 * 117.49713 * 0.02562 * 19 16 14 21 21 C 1.53001 * 117.49706 * 215.00105 * 19 16 14 22 22 F 1.39903 * 109.47167 * 60.00350 * 21 19 16 23 23 F 1.39897 * 109.46703 * 180.02562 * 21 19 16 24 24 F 1.39900 * 109.47281 * 300.00442 * 21 19 16 25 25 H 1.09002 * 109.46587 * 300.00388 * 1 2 3 26 26 H 1.09004 * 109.47042 * 59.99661 * 1 2 3 27 27 H 1.08998 * 109.47128 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46836 * 240.00255 * 2 1 3 29 29 H 1.08994 * 109.47120 * 120.00123 * 2 1 3 30 30 H 1.08995 * 109.47432 * 60.00011 * 3 2 1 31 31 H 1.09004 * 109.47418 * 300.00108 * 3 2 1 32 32 H 1.08996 * 109.47175 * 60.00185 * 4 3 2 33 33 H 1.08999 * 109.47145 * 299.99429 * 4 3 2 34 34 H 0.96995 * 120.00244 * 179.97438 * 9 8 6 35 35 H 1.09005 * 117.49645 * 359.97438 * 18 16 14 36 36 H 1.08996 * 117.49974 * 145.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.3800 3.4365 -1.1847 7 1 4.1971 4.4932 -1.3127 8 6 4.9412 2.6981 -2.2194 9 7 5.5406 1.5572 -1.9625 10 14 4.8437 3.3272 -3.9755 11 1 4.1232 4.6256 -3.9969 12 1 6.2160 3.5144 -4.5113 13 1 4.1148 2.3422 -4.8144 14 6 4.1916 3.4918 1.1616 15 8 3.9067 2.9498 2.2086 16 6 4.6945 4.9125 1.1610 17 1 4.3944 5.5173 0.3052 18 6 6.0785 5.1723 1.7592 19 6 4.8230 5.6169 2.5131 20 1 4.5443 5.0527 3.4030 21 6 4.5207 7.1160 2.5602 22 9 3.2014 7.3388 2.1513 23 9 4.6897 7.5849 3.8674 24 9 5.3949 7.7952 1.7049 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6768 1.9563 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9285 0.8891 34 1 5.9320 1.0416 -2.6848 35 1 6.6252 4.3156 2.1535 36 1 6.6890 5.9479 1.2970 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182321870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:08 Heat of formation + Delta-G solvation = -190.274791 kcal Electronic energy + Delta-G solvation = -22532.770047 eV Core-core repulsion = 18601.899457 eV Total energy + Delta-G solvation = -3930.870589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.11512 -48.63511 -48.60454 -40.85829 -38.09574 -36.71644 -35.55707 -33.42843 -30.27137 -28.15936 -26.85758 -25.65780 -23.44669 -22.64337 -21.92011 -20.98595 -19.75896 -19.38618 -18.81204 -18.47057 -17.54997 -16.57326 -16.33677 -16.06814 -15.72611 -15.55837 -15.49023 -15.04616 -14.96638 -14.81701 -14.77057 -14.63529 -14.14635 -13.83361 -13.64295 -13.39780 -13.10349 -12.96973 -12.73565 -12.68414 -12.15246 -12.06250 -12.00612 -11.86366 -11.73389 -11.57828 -11.41727 -11.00910 -10.44682 -9.50773 -8.30906 -6.05531 1.39527 1.50200 1.61142 1.64139 1.75265 2.22722 2.41066 2.63276 2.93654 3.03473 3.15329 3.43277 3.66105 3.86985 4.03819 4.09832 4.17105 4.30435 4.37105 4.54927 4.65551 4.84086 4.85266 4.87915 4.94685 4.99400 5.07666 5.18169 5.35796 5.42708 5.46249 5.57471 5.97581 6.40214 7.10366 7.53743 7.96763 8.71305 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.014421 B = 0.006103 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.110210 B = 4586.826144 C = 5781.715832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.114 3.886 5 N -0.439 5.439 6 C -0.355 4.355 7 H 0.099 0.901 8 C 0.008 3.992 9 N -0.887 5.887 10 Si 0.978 3.022 11 H -0.258 1.258 12 H -0.279 1.279 13 H -0.278 1.278 14 C 0.480 3.520 15 O -0.632 6.632 16 C -0.139 4.139 17 H 0.131 0.869 18 C -0.102 4.102 19 C -0.205 4.205 20 H 0.146 0.854 21 C 0.496 3.504 22 F -0.186 7.186 23 F -0.177 7.177 24 F -0.177 7.177 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.031 0.969 34 H 0.273 0.727 35 H 0.109 0.891 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.276 5.472 2.151 6.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.155 4.155 4 C -0.009 4.009 5 N -0.155 5.155 6 C -0.482 4.482 7 H 0.117 0.883 8 C -0.196 4.196 9 N -0.524 5.524 10 Si 0.802 3.198 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.204 1.204 14 C 0.270 3.730 15 O -0.521 6.521 16 C -0.159 4.159 17 H 0.149 0.851 18 C -0.139 4.139 19 C -0.224 4.224 20 H 0.164 0.836 21 C 0.442 3.558 22 F -0.167 7.167 23 F -0.159 7.159 24 F -0.159 7.159 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.329 5.067 2.515 6.118 hybrid contribution 0.023 0.248 -0.703 0.746 sum -2.306 5.316 1.811 6.071 Atomic orbital electron populations 1.21716 0.94177 1.02364 1.01765 1.21406 0.97103 0.95090 1.01760 1.21782 0.95437 0.97881 1.00391 1.21458 0.93214 0.84258 1.01964 1.43650 1.54359 1.12304 1.05153 1.19775 1.41810 0.96256 0.90366 0.88304 1.26104 0.93379 0.96329 1.03759 1.70013 1.32162 1.16007 1.34261 0.85103 0.78075 0.78957 0.77670 1.18194 1.20504 1.20372 1.19903 0.81362 0.88331 0.83406 1.90496 1.57791 1.71202 1.32626 1.22014 1.03412 0.95054 0.95465 0.85101 1.23159 0.88832 1.03568 0.98388 1.23345 1.08722 0.89987 1.00373 0.83624 1.19318 0.73875 0.89291 0.73338 1.93184 1.37336 1.95743 1.90448 1.93172 1.95163 1.90289 1.37260 1.93160 1.69397 1.82395 1.70933 0.93030 0.92574 0.91040 0.91946 0.92415 0.94251 0.92666 0.88562 0.95004 0.91719 0.87292 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.12 -3.78 5.93 30.60 0.18 -3.60 16 3 C -0.12 -4.73 5.51 30.59 0.17 -4.56 16 4 C 0.11 5.47 4.91 86.38 0.42 5.89 16 5 N -0.44 -21.73 2.55 -635.52 -1.62 -23.35 16 6 C -0.35 -17.20 8.72 84.04 0.73 -16.47 16 7 H 0.10 4.54 6.52 -2.91 -0.02 4.52 16 8 C 0.01 0.37 4.95 84.93 0.42 0.79 16 9 N -0.89 -45.16 11.31 21.66 0.25 -44.92 16 10 Si 0.98 37.77 29.60 68.60 2.03 39.80 16 11 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 12 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 13 H -0.28 -10.67 7.11 99.48 0.71 -9.96 16 14 C 0.48 22.95 7.39 87.66 0.65 23.60 16 15 O -0.63 -32.94 15.92 -3.04 -0.05 -32.99 16 16 C -0.14 -5.30 4.94 -11.54 -0.06 -5.36 16 17 H 0.13 4.85 6.75 -2.38 -0.02 4.83 16 18 C -0.10 -3.19 9.63 30.61 0.29 -2.89 16 19 C -0.20 -6.56 5.41 -10.78 -0.06 -6.62 16 20 H 0.15 4.91 7.67 -2.39 -0.02 4.90 16 21 C 0.50 14.32 3.36 71.98 0.24 14.56 16 22 F -0.19 -5.78 17.27 44.97 0.78 -5.01 16 23 F -0.18 -4.89 17.32 44.97 0.78 -4.11 16 24 F -0.18 -4.88 15.90 44.97 0.71 -4.16 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.10 4.85 5.35 -2.39 -0.01 4.84 16 33 H 0.03 1.60 7.57 -2.39 -0.02 1.58 16 34 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 35 H 0.11 3.50 8.14 -2.38 -0.02 3.48 16 36 H 0.14 3.57 7.22 -2.39 -0.02 3.55 16 Total: -1.00 -56.94 316.36 7.68 -49.26 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 1.09 Total: 23.18 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 3.71 Total: 2.30 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.38 Total: -68.27 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -0.05 Total: -32.99 kcal Atomic # 9 Polarization: -15.55 SS G_CDS: 2.27 Total: -13.28 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 2.03 Total: 39.80 kcal Total: -56.94 7.68 -49.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182321870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.014 kcal (2) G-P(sol) polarization free energy of solvation -56.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds