Wall clock time and date at job start Tue Mar 31 2020 00:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46752 * 2 1 4 4 C 1.53002 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47075 * 180.02562 * 4 3 2 6 6 C 1.37044 * 120.00146 * 264.20274 * 5 4 3 7 7 H 1.08004 * 120.00173 * 140.61829 * 6 5 4 8 8 C 1.38883 * 119.99884 * 320.62368 * 6 5 4 9 9 N 1.31481 * 120.00151 * 339.29261 * 8 6 5 10 10 Si 1.86799 * 119.99930 * 159.29826 * 8 6 5 11 11 H 1.48502 * 109.47262 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47204 * 119.99760 * 10 8 6 13 13 H 1.48499 * 109.47077 * 239.99734 * 10 8 6 14 14 C 1.34778 * 120.00145 * 84.20420 * 5 4 3 15 15 S 1.71200 * 119.99865 * 359.97438 * 14 5 4 16 16 N 1.34775 * 119.99966 * 180.02562 * 14 5 4 17 17 C 1.39890 * 119.99733 * 185.46241 * 16 14 5 18 18 C 1.39294 * 120.48843 * 38.50083 * 17 16 14 19 19 C 1.38499 * 118.35696 * 179.97438 * 18 17 16 20 20 C 1.38281 * 119.23770 * 0.25294 * 19 18 17 21 21 N 1.31859 * 120.92191 * 359.49652 * 20 19 18 22 22 C 1.31813 * 121.79568 * 0.49903 * 21 20 19 23 23 H 1.09002 * 109.46949 * 299.99655 * 1 2 3 24 24 H 1.08990 * 109.47418 * 59.99878 * 1 2 3 25 25 H 1.09009 * 109.46905 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46949 * 240.00345 * 2 1 3 27 27 H 1.08996 * 109.47144 * 120.00492 * 2 1 3 28 28 H 1.09002 * 109.47112 * 60.00445 * 3 2 1 29 29 H 1.08990 * 109.47259 * 300.00219 * 3 2 1 30 30 H 1.09002 * 109.46949 * 60.00345 * 4 3 2 31 31 H 1.08999 * 109.47592 * 300.00719 * 4 3 2 32 32 H 0.96998 * 119.99663 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00424 * 5.45544 * 16 14 5 34 34 H 1.07997 * 120.82556 * 359.96210 * 18 17 16 35 35 H 1.07999 * 120.38524 * 179.97438 * 19 18 17 36 36 H 1.08005 * 119.53722 * 179.75454 * 20 19 18 37 37 H 1.08004 * 119.67108 * 179.74944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3992 3.4305 -1.1806 7 1 4.1513 4.4687 -1.3454 8 6 5.0634 2.7104 -2.1650 9 7 5.7195 1.6157 -1.8490 10 14 5.0248 3.2972 -3.9380 11 1 4.2241 4.5446 -4.0292 12 1 6.4103 3.5628 -4.4018 13 1 4.4088 2.2506 -4.7925 14 6 4.1723 3.4977 1.1616 15 16 3.7458 2.7399 2.6363 16 7 4.6210 4.7686 1.1620 17 6 4.8480 5.4297 2.3738 18 6 5.3942 4.7483 3.4590 19 6 5.6008 5.4461 4.6375 20 6 5.2562 6.7839 4.6996 21 7 4.7453 7.4013 3.6524 22 6 4.5327 6.7749 2.5123 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9329 0.9289 -0.8909 31 1 3.9337 0.9285 0.8890 32 1 6.1837 1.1130 -2.5365 33 1 4.7867 5.2248 0.3222 34 1 5.6500 3.7018 3.3836 35 1 6.0219 4.9501 5.4994 36 1 5.4115 7.3317 5.6173 37 1 4.1087 7.3133 1.6775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199899403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:12 Heat of formation + Delta-G solvation = 41.792387 kcal Electronic energy + Delta-G solvation = -19450.381512 eV Core-core repulsion = 16546.476474 eV Total energy + Delta-G solvation = -2903.905039 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.93216 -38.46413 -35.79115 -34.18579 -32.59062 -31.56334 -29.72479 -28.26674 -26.27696 -23.99070 -23.21753 -22.11207 -21.39854 -20.55086 -18.24228 -17.69456 -16.64540 -16.21809 -15.60893 -15.20803 -14.93055 -14.72403 -14.02740 -13.76615 -13.52675 -13.44788 -12.82572 -12.56929 -12.42675 -12.18288 -11.90796 -11.77627 -11.57106 -11.23256 -10.86152 -10.76349 -10.62529 -10.56093 -10.22494 -9.97650 -9.69840 -9.27528 -9.15884 -8.87619 -7.75502 -7.11562 -6.84867 -6.20143 -4.79234 1.46054 1.86012 2.56433 2.85590 2.89798 2.91429 3.11402 3.61361 3.69440 4.28880 4.39424 4.60829 4.91918 5.31535 5.43442 5.44388 5.49558 5.57346 5.65189 5.87631 5.96531 6.05550 6.17145 6.23946 6.25105 6.40071 6.52908 6.63613 6.66187 6.71914 6.76113 6.87313 6.92401 7.09927 7.24735 7.47718 7.76383 7.96167 8.39271 8.52045 8.84103 9.91075 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.006410 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.161209 B = 4367.007669 C = 5719.517327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.129 4.129 4 C 0.111 3.889 5 N -0.340 5.340 6 C -0.377 4.377 7 H 0.101 0.899 8 C 0.064 3.936 9 N -0.820 5.820 10 Si 0.928 3.072 11 H -0.261 1.261 12 H -0.273 1.273 13 H -0.270 1.270 14 C 0.490 3.510 15 S -0.756 6.756 16 N -0.638 5.638 17 C 0.120 3.880 18 C -0.038 4.038 19 C -0.168 4.168 20 C 0.071 3.929 21 N -0.482 5.482 22 C 0.066 3.934 23 H 0.053 0.947 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.284 0.716 33 H 0.408 0.592 34 H 0.161 0.839 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.266 2.371 0.031 2.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C -0.167 4.167 4 C -0.012 4.012 5 N -0.023 5.023 6 C -0.508 4.508 7 H 0.119 0.881 8 C -0.151 4.151 9 N -0.449 5.449 10 Si 0.752 3.248 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.195 1.195 14 C 0.128 3.872 15 S -0.624 6.624 16 N -0.268 5.268 17 C 0.021 3.979 18 C -0.070 4.070 19 C -0.190 4.190 20 C -0.088 4.088 21 N -0.191 5.191 22 C -0.094 4.094 23 H 0.072 0.928 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.248 0.752 34 H 0.178 0.822 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.681 2.363 0.735 2.991 hybrid contribution 0.451 -0.139 -2.156 2.207 sum -1.229 2.224 -1.421 2.912 Atomic orbital electron populations 1.21738 0.96383 1.00810 1.01567 1.21360 0.95221 0.97038 1.01715 1.21870 0.95936 0.96657 1.02280 1.21921 0.92767 0.81456 1.05077 1.42873 1.44910 1.11811 1.02668 1.19737 1.39881 0.98964 0.92210 0.88115 1.25564 0.92478 0.95619 1.01423 1.69994 1.23799 1.15649 1.35496 0.85854 0.78936 0.79759 0.80292 1.18479 1.19817 1.19515 1.21597 0.89092 0.85838 0.90672 1.92624 1.78122 1.72991 1.18682 1.41652 1.66174 1.11734 1.07258 1.18516 0.98851 0.92848 0.87639 1.22139 0.91718 1.01455 0.91689 1.21920 1.03051 0.95233 0.98798 1.22509 0.97183 0.92454 0.96634 1.67549 1.13297 1.38807 0.99443 1.22381 0.99667 0.91238 0.96067 0.92791 0.93197 0.93293 0.92540 0.91815 0.90826 0.92754 0.88071 0.89276 0.90540 0.75168 0.82205 0.85260 0.83540 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.13 -2.45 5.44 -26.73 -0.15 -2.60 16 4 C 0.11 2.40 4.65 -4.04 -0.02 2.38 16 5 N -0.34 -7.68 2.52 -116.74 -0.29 -7.97 16 6 C -0.38 -8.28 8.51 -14.98 -0.13 -8.41 16 7 H 0.10 2.08 6.95 -52.48 -0.36 1.71 16 8 C 0.06 1.38 4.89 -17.46 -0.09 1.29 16 9 N -0.82 -18.83 11.65 55.49 0.65 -18.18 16 10 Si 0.93 16.63 29.60 -169.99 -5.03 11.60 16 11 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 12 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 13 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 14 C 0.49 11.14 7.41 -86.92 -0.64 10.49 16 15 S -0.76 -18.45 23.54 -107.50 -2.53 -20.98 16 16 N -0.64 -12.71 5.23 -11.31 -0.06 -12.77 16 17 C 0.12 2.28 6.02 -83.56 -0.50 1.77 16 18 C -0.04 -0.73 7.97 -39.09 -0.31 -1.04 16 19 C -0.17 -2.65 10.10 -39.47 -0.40 -3.05 16 20 C 0.07 1.08 11.18 -17.52 -0.20 0.88 16 21 N -0.48 -8.17 10.35 -13.08 -0.14 -8.31 16 22 C 0.07 1.14 11.12 -17.33 -0.19 0.94 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 1.55 7.39 -51.93 -0.38 1.16 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.10 2.27 5.73 -51.93 -0.30 1.97 16 31 H 0.09 2.07 6.85 -51.93 -0.36 1.72 16 32 H 0.28 6.04 8.31 -40.82 -0.34 5.70 16 33 H 0.41 7.44 6.92 -40.82 -0.28 7.16 16 34 H 0.16 3.39 6.00 -42.33 -0.25 3.13 16 35 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 37 H 0.15 2.17 8.06 -52.48 -0.42 1.74 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -26.85 318.52 -9.90 -36.75 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -4.88 Total: 16.07 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.41 Total: -0.99 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.16 Total: -47.24 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Atomic # 16 Polarization: -18.45 SS G_CDS: -2.53 Total: -20.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.85 -9.90 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199899403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.539 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds