Wall clock time and date at job start Tue Mar 31 2020 00:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46752 * 2 1 4 4 C 1.53002 * 109.46752 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47075 * 180.02562 * 4 3 2 6 6 C 1.37044 * 120.00146 * 264.20274 * 5 4 3 7 7 H 1.08004 * 120.00173 * 140.61829 * 6 5 4 8 8 C 1.38883 * 119.99884 * 320.62368 * 6 5 4 9 9 N 1.31481 * 120.00151 * 339.29261 * 8 6 5 10 10 Si 1.86799 * 119.99930 * 159.29826 * 8 6 5 11 11 H 1.48502 * 109.47262 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47204 * 119.99760 * 10 8 6 13 13 H 1.48499 * 109.47077 * 239.99734 * 10 8 6 14 14 C 1.34778 * 120.00145 * 84.20420 * 5 4 3 15 15 S 1.71200 * 119.99865 * 359.97438 * 14 5 4 16 16 N 1.34775 * 119.99966 * 180.02562 * 14 5 4 17 17 C 1.39890 * 119.99733 * 185.46241 * 16 14 5 18 18 C 1.39294 * 120.48843 * 38.50083 * 17 16 14 19 19 C 1.38499 * 118.35696 * 179.97438 * 18 17 16 20 20 C 1.38281 * 119.23770 * 0.25294 * 19 18 17 21 21 N 1.31859 * 120.92191 * 359.49652 * 20 19 18 22 22 C 1.31813 * 121.79568 * 0.49903 * 21 20 19 23 23 H 1.09002 * 109.46949 * 299.99655 * 1 2 3 24 24 H 1.08990 * 109.47418 * 59.99878 * 1 2 3 25 25 H 1.09009 * 109.46905 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46949 * 240.00345 * 2 1 3 27 27 H 1.08996 * 109.47144 * 120.00492 * 2 1 3 28 28 H 1.09002 * 109.47112 * 60.00445 * 3 2 1 29 29 H 1.08990 * 109.47259 * 300.00219 * 3 2 1 30 30 H 1.09002 * 109.46949 * 60.00345 * 4 3 2 31 31 H 1.08999 * 109.47592 * 300.00719 * 4 3 2 32 32 H 0.96998 * 119.99663 * 180.02562 * 9 8 6 33 33 H 0.97001 * 120.00424 * 5.45544 * 16 14 5 34 34 H 1.07997 * 120.82556 * 359.96210 * 18 17 16 35 35 H 1.07999 * 120.38524 * 179.97438 * 19 18 17 36 36 H 1.08005 * 119.53722 * 179.75454 * 20 19 18 37 37 H 1.08004 * 119.67108 * 179.74944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3992 3.4305 -1.1806 7 1 4.1513 4.4687 -1.3454 8 6 5.0634 2.7104 -2.1650 9 7 5.7195 1.6157 -1.8490 10 14 5.0248 3.2972 -3.9380 11 1 4.2241 4.5446 -4.0292 12 1 6.4103 3.5628 -4.4018 13 1 4.4088 2.2506 -4.7925 14 6 4.1723 3.4977 1.1616 15 16 3.7458 2.7399 2.6363 16 7 4.6210 4.7686 1.1620 17 6 4.8480 5.4297 2.3738 18 6 5.3942 4.7483 3.4590 19 6 5.6008 5.4461 4.6375 20 6 5.2562 6.7839 4.6996 21 7 4.7453 7.4013 3.6524 22 6 4.5327 6.7749 2.5123 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9329 0.9289 -0.8909 31 1 3.9337 0.9285 0.8890 32 1 6.1837 1.1130 -2.5365 33 1 4.7867 5.2248 0.3222 34 1 5.6500 3.7018 3.3836 35 1 6.0219 4.9501 5.4994 36 1 5.4115 7.3317 5.6173 37 1 4.1087 7.3133 1.6775 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199899403.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:11 Heat of formation + Delta-G solvation = 28.977826 kcal Electronic energy + Delta-G solvation = -19450.937193 eV Core-core repulsion = 16546.476474 eV Total energy + Delta-G solvation = -2904.460720 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36433 -40.07898 -37.31480 -35.64241 -34.23921 -32.91567 -31.14551 -29.75582 -27.94893 -25.47242 -24.61458 -23.52509 -23.02687 -22.00617 -19.89611 -19.25382 -18.22497 -17.64826 -17.07590 -16.77958 -16.49264 -16.15809 -15.54721 -15.39146 -14.80812 -14.80485 -14.18070 -14.03663 -13.88550 -13.73911 -13.33745 -13.20027 -13.00248 -12.71066 -12.28070 -12.24662 -12.10278 -11.96439 -11.85287 -11.53031 -11.30608 -10.81723 -10.51050 -10.29330 -9.32734 -8.79469 -8.66824 -8.05840 -6.54510 0.05450 0.46645 0.96078 1.29108 1.43781 1.45455 1.55427 1.99750 2.16190 2.68188 2.96942 3.02254 3.68836 4.04696 4.06287 4.08765 4.16464 4.25634 4.32162 4.46580 4.54325 4.76624 4.79912 4.81452 4.91817 4.96805 5.03502 5.13903 5.27412 5.30448 5.36415 5.38221 5.44667 5.48658 5.66995 5.94055 6.18340 6.33001 6.82030 7.07910 7.13532 8.26171 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.006410 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.161209 B = 4367.007669 C = 5719.517327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.115 4.115 4 C 0.118 3.882 5 N -0.346 5.346 6 C -0.392 4.392 7 H 0.114 0.886 8 C 0.031 3.969 9 N -0.854 5.854 10 Si 0.997 3.003 11 H -0.252 1.252 12 H -0.273 1.273 13 H -0.269 1.269 14 C 0.484 3.516 15 S -0.802 6.802 16 N -0.629 5.629 17 C 0.094 3.906 18 C -0.058 4.058 19 C -0.163 4.163 20 C 0.080 3.920 21 N -0.491 5.491 22 C 0.072 3.928 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.289 0.711 33 H 0.415 0.585 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.189 0.811 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.645 3.744 -0.623 4.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.154 4.154 4 C -0.006 4.006 5 N -0.028 5.028 6 C -0.523 4.523 7 H 0.131 0.869 8 C -0.181 4.181 9 N -0.484 5.484 10 Si 0.817 3.183 11 H -0.175 1.175 12 H -0.198 1.198 13 H -0.194 1.194 14 C 0.121 3.879 15 S -0.672 6.672 16 N -0.260 5.260 17 C -0.004 4.004 18 C -0.090 4.090 19 C -0.185 4.185 20 C -0.078 4.078 21 N -0.201 5.201 22 C -0.088 4.088 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.256 0.744 34 H 0.149 0.851 35 H 0.175 0.825 36 H 0.206 0.794 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.050 3.770 0.107 4.293 hybrid contribution 0.655 -0.521 -1.870 2.049 sum -1.395 3.249 -1.763 3.951 Atomic orbital electron populations 1.21696 0.94257 1.02343 1.01658 1.21346 0.97033 0.94755 1.01820 1.21748 0.93960 0.98592 1.01066 1.21836 0.94334 0.81094 1.03293 1.43059 1.44856 1.12030 1.02871 1.20156 1.40258 0.99812 0.92059 0.86894 1.26430 0.91454 0.95382 1.04835 1.70062 1.24507 1.16839 1.36956 0.84832 0.78790 0.79480 0.75161 1.17530 1.19821 1.19350 1.21448 0.89743 0.86870 0.89887 1.92576 1.79708 1.74227 1.20646 1.41555 1.65450 1.10798 1.08154 1.18740 1.00556 0.93728 0.87373 1.22031 0.93034 1.00575 0.93323 1.22223 1.02205 0.95653 0.98371 1.23174 0.94922 0.92246 0.97430 1.67669 1.13701 1.38942 0.99752 1.22657 0.98827 0.90377 0.96900 0.93376 0.92430 0.91052 0.91650 0.92491 0.93031 0.92642 0.88864 0.91696 0.90038 0.74366 0.85121 0.82540 0.79445 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.91 71.98 0.71 -3.00 16 2 C -0.11 -3.53 5.93 30.60 0.18 -3.35 16 3 C -0.11 -4.45 5.44 30.60 0.17 -4.29 16 4 C 0.12 5.26 4.65 86.38 0.40 5.66 16 5 N -0.35 -15.97 2.52 -523.26 -1.32 -17.28 16 6 C -0.39 -17.20 8.51 84.03 0.72 -16.49 16 7 H 0.11 4.57 6.95 -2.91 -0.02 4.55 16 8 C 0.03 1.31 4.89 84.90 0.42 1.73 16 9 N -0.85 -39.46 11.65 21.66 0.25 -39.21 16 10 Si 1.00 33.06 29.60 68.60 2.03 35.09 16 11 H -0.25 -7.95 7.11 99.48 0.71 -7.24 16 12 H -0.27 -9.03 7.11 99.48 0.71 -8.33 16 13 H -0.27 -8.82 7.11 99.48 0.71 -8.12 16 14 C 0.48 22.64 7.41 179.05 1.33 23.97 16 15 S -0.80 -40.71 23.54 -56.49 -1.33 -42.04 16 16 N -0.63 -25.41 5.23 -189.68 -0.99 -26.40 16 17 C 0.09 3.55 6.02 38.26 0.23 3.78 16 18 C -0.06 -2.23 7.97 22.59 0.18 -2.05 16 19 C -0.16 -4.91 10.10 22.34 0.23 -4.68 16 20 C 0.08 2.21 11.18 84.70 0.95 3.16 16 21 N -0.49 -15.53 10.35 -195.30 -2.02 -17.55 16 22 C 0.07 2.36 11.12 84.85 0.94 3.30 16 23 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 2.23 7.39 -2.39 -0.02 2.21 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 4.30 5.73 -2.39 -0.01 4.28 16 31 H 0.06 3.19 6.85 -2.39 -0.02 3.17 16 32 H 0.29 12.32 8.31 -92.71 -0.77 11.55 16 33 H 0.42 15.15 6.92 -92.71 -0.64 14.51 16 34 H 0.13 5.80 6.00 -9.37 -0.06 5.74 16 35 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 37 H 0.17 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -58.81 318.52 3.47 -55.34 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: 0.40 Total: 44.30 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 6.45 Total: 7.74 kcal Atomic # 7 Polarization: -96.37 SS G_CDS: -4.08 Total: -100.44 kcal Atomic # 14 Polarization: 33.06 SS G_CDS: 2.03 Total: 35.09 kcal Atomic # 16 Polarization: -40.71 SS G_CDS: -1.33 Total: -42.04 kcal Total: -58.81 3.47 -55.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199899403.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.322 kcal (2) G-P(sol) polarization free energy of solvation -58.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds