Wall clock time and date at job start Tue Mar 31 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31836 * 118.96921 * 2 1 4 4 C 1.32181 * 120.95594 * 179.97438 * 3 2 1 5 5 C 1.39806 * 118.94065 * 0.02562 * 4 3 2 6 6 C 1.48206 * 120.92932 * 179.97438 * 5 4 3 7 7 C 1.39160 * 120.27515 * 303.48536 * 6 5 4 8 8 C 1.38330 * 120.09970 * 180.02562 * 7 6 5 9 9 C 1.38037 * 120.77624 * 359.93543 * 8 7 6 10 10 C 1.39121 * 120.23366 * 0.02562 * 9 8 7 11 11 N 1.38186 * 132.74099 * 180.02562 * 10 9 8 12 12 H 0.96999 * 124.70264 * 0.02562 * 11 10 9 13 13 C 1.35592 * 110.59342 * 179.97438 * 11 10 9 14 14 C 1.38985 * 109.25276 * 359.97438 * 13 11 10 15 15 C 1.40960 * 126.93182 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00068 * 158.52796 * 15 14 13 17 17 C 1.39687 * 119.99736 * 338.52476 * 15 14 13 18 18 N 1.31078 * 120.00377 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99828 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47301 * 60.00257 * 19 17 15 21 21 H 1.48503 * 109.47406 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47227 * 300.00189 * 19 17 15 23 23 C 1.40190 * 120.28348 * 123.46337 * 6 5 4 24 24 C 1.39800 * 118.14297 * 0.24787 * 5 4 3 25 25 N 1.31842 * 118.96696 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47041 * 90.00240 * 1 2 3 27 27 H 1.08997 * 109.46844 * 209.99672 * 1 2 3 28 28 H 1.08999 * 109.47093 * 330.00229 * 1 2 3 29 29 H 1.07997 * 120.53016 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.95468 * 0.02562 * 7 6 5 31 31 H 1.08001 * 119.61381 * 179.97438 * 8 7 6 32 32 H 1.07992 * 119.88551 * 180.02562 * 9 8 7 33 33 H 1.08005 * 125.37034 * 180.26692 * 13 11 10 34 34 H 0.96993 * 119.99998 * 180.02562 * 18 17 15 35 35 H 1.08005 * 120.53131 * 179.75612 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1534 0.0000 4 6 3.4666 1.1992 0.0005 5 6 4.1851 -0.0001 0.0005 6 6 5.6672 -0.0001 0.0005 7 6 6.3687 0.6629 -1.0019 8 6 7.7520 0.6601 -0.9986 9 6 8.4547 0.0052 -0.0073 10 6 7.7767 -0.6643 1.0064 11 7 8.2059 -1.3879 2.1026 12 1 9.1354 -1.5401 2.3344 13 6 7.1474 -1.8547 2.8100 14 6 5.9696 -1.4478 2.1947 15 6 4.6537 -1.7255 2.6168 16 1 3.8377 -1.0984 2.2891 17 6 4.4050 -2.8118 3.4590 18 7 5.3953 -3.5726 3.8572 19 14 2.6613 -3.1794 4.0191 20 1 1.8055 -3.4410 2.8340 21 1 2.6659 -4.3746 4.9004 22 1 2.1261 -2.0145 4.7686 23 6 6.3741 -0.6677 1.0104 24 6 3.4666 -1.1992 -0.0054 25 7 2.1455 -1.1535 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.9826 2.1479 0.0001 30 1 5.8325 1.1805 -1.7834 31 1 8.2886 1.1769 -1.7806 32 1 9.5345 0.0126 -0.0185 33 1 7.2099 -2.4453 3.7122 34 1 5.2226 -4.3271 4.4417 35 1 3.9826 -2.1481 -0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205863931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:29 Heat of formation + Delta-G solvation = 92.232425 kcal Electronic energy + Delta-G solvation = -20941.018274 eV Core-core repulsion = 17903.856528 eV Total energy + Delta-G solvation = -3037.161746 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.56086 -39.66167 -36.05560 -33.89294 -33.15037 -32.91080 -30.63846 -29.01759 -28.02957 -26.98628 -24.75289 -23.98203 -22.75264 -20.98163 -20.66849 -19.52643 -17.29122 -16.91209 -16.20682 -15.85564 -15.48940 -14.81052 -14.50969 -14.40329 -13.60825 -13.27682 -13.18486 -13.01158 -12.76361 -12.56143 -12.27721 -12.09770 -11.63799 -11.36779 -11.16420 -11.08560 -10.85327 -10.73474 -10.34531 -10.23739 -9.94802 -9.74870 -9.27439 -8.99082 -8.62167 -8.17398 -7.20736 -6.59087 -6.54990 -4.08033 1.25060 1.69953 2.10566 2.48413 3.12632 3.16397 3.24499 4.06417 4.14927 4.25550 4.40535 4.43884 4.62949 4.71610 5.17756 5.28491 5.41528 5.58791 5.65899 5.75898 5.80076 5.82942 5.83324 6.00465 6.19863 6.31305 6.46384 6.56360 6.67598 6.97458 7.00396 7.07729 7.24728 7.34299 7.43773 7.59114 7.64845 7.91215 8.20439 8.55594 8.63973 8.89942 9.04881 9.09464 10.46616 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.009943 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.502855 B = 2815.471741 C = 4955.705042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.294 3.706 3 N -0.527 5.527 4 C 0.148 3.852 5 C -0.127 4.127 6 C 0.003 3.997 7 C -0.165 4.165 8 C -0.117 4.117 9 C -0.141 4.141 10 C 0.085 3.915 11 N -0.590 5.590 12 H 0.396 0.604 13 C -0.070 4.070 14 C 0.022 3.978 15 C -0.426 4.426 16 H 0.067 0.933 17 C 0.067 3.933 18 N -0.833 5.833 19 Si 0.899 3.101 20 H -0.260 1.260 21 H -0.281 1.281 22 H -0.271 1.271 23 C -0.110 4.110 24 C 0.198 3.802 25 N -0.521 5.521 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.176 0.824 34 H 0.273 0.727 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 4.766 -5.821 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.027 3.973 3 N -0.242 5.242 4 C -0.017 4.017 5 C -0.131 4.131 6 C 0.001 3.999 7 C -0.185 4.185 8 C -0.137 4.137 9 C -0.163 4.163 10 C -0.026 4.026 11 N -0.191 5.191 12 H 0.229 0.771 13 C -0.194 4.194 14 C 0.017 3.983 15 C -0.459 4.459 16 H 0.085 0.915 17 C -0.144 4.144 18 N -0.463 5.463 19 Si 0.724 3.276 20 H -0.185 1.185 21 H -0.206 1.206 22 H -0.196 1.196 23 C -0.117 4.117 24 C 0.032 3.968 25 N -0.235 5.235 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.179 0.821 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.193 0.807 34 H 0.084 0.916 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.267 4.480 -5.549 7.243 hybrid contribution 0.819 -0.398 0.564 1.071 sum -0.448 4.081 -4.985 6.458 Atomic orbital electron populations 1.20462 0.86613 1.03636 1.03098 1.23082 0.97838 0.83967 0.92398 1.68106 1.10026 1.30297 1.15753 1.23208 0.89100 0.97848 0.91533 1.20498 0.95251 0.95332 1.02041 1.17703 0.88961 0.98337 0.94902 1.20559 0.93846 1.04400 0.99736 1.20311 0.93647 1.01327 0.98370 1.19890 0.97945 1.02833 0.95641 1.18110 0.93646 0.99236 0.91577 1.41469 1.08084 1.46716 1.22838 0.77076 1.22717 0.84298 1.11086 1.01313 1.17973 0.93054 0.96662 0.90595 1.18575 0.92167 1.09985 1.25139 0.91518 1.25542 0.98290 0.95308 0.95308 1.69657 1.32210 1.15045 1.29387 0.86467 0.83402 0.78173 0.79533 1.18466 1.20649 1.19622 1.19408 0.91636 1.03387 0.97238 1.23388 0.88468 0.98559 0.86410 1.68223 1.10386 1.29842 1.15042 0.90311 0.90057 0.90190 0.82082 0.87429 0.87146 0.87887 0.80674 0.91608 0.81239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.31 36.01 0.37 -0.72 16 2 C 0.29 5.36 7.64 -157.12 -1.20 4.16 16 3 N -0.53 -9.66 10.32 -10.44 -0.11 -9.77 16 4 C 0.15 2.68 10.96 -16.82 -0.18 2.49 16 5 C -0.13 -2.51 4.60 -104.63 -0.48 -2.99 16 6 C 0.00 0.06 5.46 -104.73 -0.57 -0.51 16 7 C -0.16 -2.88 9.65 -39.21 -0.38 -3.26 16 8 C -0.12 -1.93 10.00 -39.62 -0.40 -2.32 16 9 C -0.14 -2.49 10.06 -39.33 -0.40 -2.89 16 10 C 0.09 1.78 7.23 -83.91 -0.61 1.17 16 11 N -0.59 -12.02 5.99 -9.81 -0.06 -12.08 16 12 H 0.40 6.52 8.96 -40.82 -0.37 6.16 16 13 C -0.07 -1.68 10.77 -15.61 -0.17 -1.85 16 14 C 0.02 0.57 5.97 -104.83 -0.63 -0.06 16 15 C -0.43 -11.09 7.63 -38.01 -0.29 -11.38 16 16 H 0.07 1.76 5.55 -52.49 -0.29 1.47 16 17 C 0.07 1.70 5.47 -17.33 -0.09 1.61 16 18 N -0.83 -21.35 10.80 55.54 0.60 -20.75 16 19 Si 0.90 20.08 29.56 -169.99 -5.02 15.05 16 20 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 C -0.11 -2.51 6.09 -104.64 -0.64 -3.15 16 24 C 0.20 4.08 8.08 -16.82 -0.14 3.94 16 25 N -0.52 -10.47 10.32 -10.43 -0.11 -10.58 16 26 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.16 2.48 8.06 -52.49 -0.42 2.06 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.18 4.34 6.36 -52.48 -0.33 4.01 16 34 H 0.27 6.58 8.30 -40.82 -0.34 6.25 16 35 H 0.17 3.62 7.86 -52.48 -0.41 3.20 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -28.58 301.90 -9.44 -38.02 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -3.50 Total: 11.31 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -5.80 Total: -15.76 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.33 Total: -53.18 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.58 -9.44 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205863931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.251 kcal (2) G-P(sol) polarization free energy of solvation -28.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds