Wall clock time and date at job start Tue Mar 31 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31836 * 118.96921 * 2 1 4 4 C 1.32181 * 120.95594 * 179.97438 * 3 2 1 5 5 C 1.39806 * 118.94065 * 0.02562 * 4 3 2 6 6 C 1.48206 * 120.92932 * 179.97438 * 5 4 3 7 7 C 1.39160 * 120.27515 * 303.48536 * 6 5 4 8 8 C 1.38330 * 120.09970 * 180.02562 * 7 6 5 9 9 C 1.38037 * 120.77624 * 359.93543 * 8 7 6 10 10 C 1.39121 * 120.23366 * 0.02562 * 9 8 7 11 11 N 1.38186 * 132.74099 * 180.02562 * 10 9 8 12 12 H 0.96999 * 124.70264 * 0.02562 * 11 10 9 13 13 C 1.35592 * 110.59342 * 179.97438 * 11 10 9 14 14 C 1.38985 * 109.25276 * 359.97438 * 13 11 10 15 15 C 1.40960 * 126.93182 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00068 * 158.52796 * 15 14 13 17 17 C 1.39687 * 119.99736 * 338.52476 * 15 14 13 18 18 N 1.31078 * 120.00377 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99828 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47301 * 60.00257 * 19 17 15 21 21 H 1.48503 * 109.47406 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47227 * 300.00189 * 19 17 15 23 23 C 1.40190 * 120.28348 * 123.46337 * 6 5 4 24 24 C 1.39800 * 118.14297 * 0.24787 * 5 4 3 25 25 N 1.31842 * 118.96696 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47041 * 90.00240 * 1 2 3 27 27 H 1.08997 * 109.46844 * 209.99672 * 1 2 3 28 28 H 1.08999 * 109.47093 * 330.00229 * 1 2 3 29 29 H 1.07997 * 120.53016 * 179.97438 * 4 3 2 30 30 H 1.07995 * 119.95468 * 0.02562 * 7 6 5 31 31 H 1.08001 * 119.61381 * 179.97438 * 8 7 6 32 32 H 1.07992 * 119.88551 * 180.02562 * 9 8 7 33 33 H 1.08005 * 125.37034 * 180.26692 * 13 11 10 34 34 H 0.96993 * 119.99998 * 180.02562 * 18 17 15 35 35 H 1.08005 * 120.53131 * 179.75612 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1534 0.0000 4 6 3.4666 1.1992 0.0005 5 6 4.1851 -0.0001 0.0005 6 6 5.6672 -0.0001 0.0005 7 6 6.3687 0.6629 -1.0019 8 6 7.7520 0.6601 -0.9986 9 6 8.4547 0.0052 -0.0073 10 6 7.7767 -0.6643 1.0064 11 7 8.2059 -1.3879 2.1026 12 1 9.1354 -1.5401 2.3344 13 6 7.1474 -1.8547 2.8100 14 6 5.9696 -1.4478 2.1947 15 6 4.6537 -1.7255 2.6168 16 1 3.8377 -1.0984 2.2891 17 6 4.4050 -2.8118 3.4590 18 7 5.3953 -3.5726 3.8572 19 14 2.6613 -3.1794 4.0191 20 1 1.8055 -3.4410 2.8340 21 1 2.6659 -4.3746 4.9004 22 1 2.1261 -2.0145 4.7686 23 6 6.3741 -0.6677 1.0104 24 6 3.4666 -1.1992 -0.0054 25 7 2.1455 -1.1535 0.0005 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 3.9826 2.1479 0.0001 30 1 5.8325 1.1805 -1.7834 31 1 8.2886 1.1769 -1.7806 32 1 9.5345 0.0126 -0.0185 33 1 7.2099 -2.4453 3.7122 34 1 5.2226 -4.3271 4.4417 35 1 3.9826 -2.1481 -0.0096 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205863931.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:26 Heat of formation + Delta-G solvation = 76.545956 kcal Electronic energy + Delta-G solvation = -20941.698490 eV Core-core repulsion = 17903.856528 eV Total energy + Delta-G solvation = -3037.841962 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -42.03651 -41.22559 -37.56743 -35.61323 -34.61641 -34.45558 -32.12960 -30.57566 -29.59083 -28.44309 -26.51695 -25.46680 -24.18072 -22.49616 -22.20046 -21.28621 -18.87752 -18.37695 -17.86065 -17.44538 -17.09444 -16.30800 -16.06148 -15.91203 -15.10060 -14.84972 -14.70247 -14.48539 -14.36199 -14.11890 -13.46107 -13.23121 -13.18332 -13.13869 -12.98693 -12.55232 -12.45063 -12.21562 -11.95616 -11.90274 -11.61737 -11.34469 -11.10673 -10.49142 -10.10253 -9.77892 -8.76173 -8.43222 -8.28757 -5.98360 -0.20543 0.20320 0.61659 1.00736 1.31634 1.34118 1.42752 2.23563 2.30790 2.79245 2.86749 3.09937 3.14151 3.27877 3.55389 3.72562 3.83223 4.25101 4.31817 4.40726 4.44829 4.66486 4.68635 4.74892 4.79120 4.98111 5.04456 5.11866 5.24206 5.33102 5.36901 5.56391 5.61738 5.81934 5.92942 5.95154 6.06055 6.22792 6.51929 6.76242 7.13512 7.18197 7.19503 7.36450 8.59133 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.011965 B = 0.009943 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.502855 B = 2815.471741 C = 4955.705042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.529 5.529 4 C 0.153 3.847 5 C -0.138 4.138 6 C -0.015 4.015 7 C -0.153 4.153 8 C -0.104 4.104 9 C -0.139 4.139 10 C 0.075 3.925 11 N -0.586 5.586 12 H 0.413 0.587 13 C -0.077 4.077 14 C -0.018 4.018 15 C -0.440 4.440 16 H 0.053 0.947 17 C 0.028 3.972 18 N -0.857 5.857 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.269 1.269 22 H -0.274 1.274 23 C -0.144 4.144 24 C 0.184 3.816 25 N -0.541 5.541 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.190 0.810 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.138 0.862 33 H 0.161 0.839 34 H 0.276 0.724 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.110 6.774 -7.714 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.018 3.982 3 N -0.243 5.243 4 C -0.012 4.012 5 C -0.142 4.142 6 C -0.017 4.017 7 C -0.173 4.173 8 C -0.123 4.123 9 C -0.160 4.160 10 C -0.035 4.035 11 N -0.189 5.189 12 H 0.249 0.751 13 C -0.202 4.202 14 C -0.023 4.023 15 C -0.474 4.474 16 H 0.072 0.928 17 C -0.180 4.180 18 N -0.489 5.489 19 Si 0.774 3.226 20 H -0.192 1.192 21 H -0.193 1.193 22 H -0.199 1.199 23 C -0.151 4.151 24 C 0.019 3.981 25 N -0.255 5.255 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.207 0.793 30 H 0.155 0.845 31 H 0.174 0.826 32 H 0.156 0.844 33 H 0.178 0.822 34 H 0.086 0.914 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.818 6.488 -7.451 9.913 hybrid contribution 0.766 -0.883 0.981 1.526 sum -0.052 5.605 -6.470 8.561 Atomic orbital electron populations 1.20626 0.83488 1.04500 1.04942 1.23954 0.99752 0.83403 0.91082 1.68234 1.10071 1.30130 1.15904 1.23657 0.89183 0.98304 0.90098 1.20535 0.95378 0.95480 1.02791 1.17916 0.89289 0.99112 0.95358 1.20985 0.94701 1.02716 0.98861 1.20882 0.93310 0.99656 0.98416 1.20343 0.99855 1.01450 0.94402 1.18537 0.93321 0.99487 0.92190 1.41279 1.08217 1.46758 1.22656 0.75091 1.22466 0.85399 1.11090 1.01289 1.18295 0.93205 0.98399 0.92419 1.18613 0.92445 1.10374 1.25930 0.92845 1.26115 1.01016 0.95310 0.95593 1.69725 1.33236 1.15586 1.30336 0.85703 0.79947 0.78136 0.78836 1.19172 1.19341 1.19943 1.19619 0.93138 1.04632 0.97700 1.23148 0.89050 0.98363 0.87541 1.68232 1.10210 1.31103 1.16004 0.87832 0.89853 0.88595 0.79278 0.84518 0.82576 0.84443 0.82201 0.91422 0.83482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.31 71.24 0.73 -1.24 16 2 C 0.28 10.14 7.64 138.72 1.06 11.20 16 3 N -0.53 -18.63 10.32 -186.93 -1.93 -20.55 16 4 C 0.15 5.32 10.96 85.02 0.93 6.26 16 5 C -0.14 -5.44 4.60 -19.87 -0.09 -5.53 16 6 C -0.01 -0.59 5.46 -19.93 -0.11 -0.70 16 7 C -0.15 -4.80 9.65 22.51 0.22 -4.58 16 8 C -0.10 -2.89 10.00 22.24 0.22 -2.67 16 9 C -0.14 -4.39 10.06 22.43 0.23 -4.16 16 10 C 0.07 3.04 7.23 38.85 0.28 3.32 16 11 N -0.59 -23.92 5.99 -184.94 -1.11 -25.03 16 12 H 0.41 13.40 8.96 -92.71 -0.83 12.57 16 13 C -0.08 -3.85 10.77 84.29 0.91 -2.94 16 14 C -0.02 -0.93 5.97 -20.00 -0.12 -1.05 16 15 C -0.44 -24.08 7.63 23.29 0.18 -23.90 16 16 H 0.05 2.97 5.55 -2.91 -0.02 2.96 16 17 C 0.03 1.47 5.47 85.16 0.47 1.94 16 18 N -0.86 -45.93 10.80 21.79 0.24 -45.69 16 19 Si 0.95 42.75 29.56 68.60 2.03 44.77 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.14 -6.66 6.09 -19.88 -0.12 -6.78 16 24 C 0.18 7.87 8.08 85.02 0.69 8.55 16 25 N -0.54 -22.08 10.32 -186.93 -1.93 -24.01 16 26 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.19 5.32 8.06 -2.91 -0.02 5.30 16 30 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 31 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.16 8.37 6.36 -2.91 -0.02 8.35 16 34 H 0.28 13.79 8.30 -92.71 -0.77 13.03 16 35 H 0.15 6.78 7.86 -2.91 -0.02 6.75 16 Total: -1.00 -64.55 301.90 3.08 -61.47 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.31 Total: 31.33 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: 5.47 Total: -22.28 kcal Atomic # 7 Polarization: -110.56 SS G_CDS: -4.73 Total: -115.29 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -64.55 3.08 -61.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205863931.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.017 kcal (2) G-P(sol) polarization free energy of solvation -64.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds