Wall clock time and date at job start Tue Mar 31 2020 00:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38213 * 120.42272 * 2 1 4 4 C 1.39485 * 118.44503 * 180.02562 * 3 2 1 5 5 N 1.39174 * 120.39104 * 179.97438 * 4 3 2 6 6 C 1.38822 * 119.99558 * 149.52573 * 5 4 3 7 7 C 1.39605 * 119.84512 * 326.79562 * 6 5 4 8 8 C 1.36310 * 120.15734 * 180.27917 * 7 6 5 9 9 C 1.40896 * 119.84152 * 0.02562 * 8 7 6 10 10 C 1.41108 * 120.15498 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99866 * 207.24279 * 10 9 8 12 12 C 1.39856 * 119.99756 * 27.23479 * 10 9 8 13 13 N 1.30901 * 120.00006 * 15.51820 * 12 10 9 14 14 Si 1.86805 * 119.99934 * 195.51702 * 12 10 9 15 15 H 1.48493 * 109.46996 * 60.00076 * 14 12 10 16 16 H 1.48496 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46939 * 300.00343 * 14 12 10 18 18 C 1.40905 * 119.69441 * 0.02562 * 9 8 7 19 19 C 1.36311 * 119.83538 * 359.97438 * 18 9 8 20 20 C 1.39413 * 119.21465 * 0.27341 * 4 3 2 21 21 N 1.31384 * 120.78159 * 359.42755 * 20 4 3 22 22 C 1.32915 * 121.69556 * 0.58445 * 21 20 4 23 23 C 1.43201 * 119.64377 * 179.68380 * 22 21 20 24 24 N 3.47704 * 80.49519 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47004 * 90.00507 * 1 2 3 26 26 H 1.09006 * 109.47130 * 210.00315 * 1 2 3 27 27 H 1.09004 * 109.47592 * 330.00354 * 1 2 3 28 28 H 1.08003 * 120.77883 * 359.97438 * 3 2 1 29 29 H 0.96994 * 120.00364 * 329.51880 * 5 4 3 30 30 H 1.07994 * 119.92011 * 0.28229 * 7 6 5 31 31 H 1.08007 * 120.07584 * 180.02562 * 8 7 6 32 32 H 0.96997 * 119.99884 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.08210 * 179.97438 * 18 9 8 34 34 H 1.08001 * 119.91669 * 179.97438 * 19 18 9 35 35 H 1.07999 * 119.60895 * 179.72306 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1918 0.0000 4 6 3.6009 1.1437 -0.0005 5 7 4.3460 2.3192 -0.0011 6 6 5.5930 2.3507 0.6081 7 6 5.8323 1.5719 1.7418 8 6 7.0526 1.6024 2.3484 9 6 8.0734 2.4228 1.8290 10 6 9.3390 2.4599 2.4520 11 1 9.9547 3.3435 2.3718 12 6 9.7958 1.3523 3.1735 13 7 9.2116 0.1900 3.0279 14 14 11.2397 1.5317 4.3451 15 1 10.9060 2.5296 5.3928 16 1 11.5260 0.2212 4.9821 17 1 12.4353 1.9867 3.5910 18 6 7.8245 3.2071 0.6851 19 6 6.5995 3.1668 0.0887 20 6 4.2389 -0.0958 -0.0069 21 7 3.5431 -1.2103 -0.0010 22 6 2.2140 -1.2037 -0.0005 23 6 1.4996 -2.4448 -0.0008 24 7 0.9328 -3.4293 -0.0015 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6866 2.1383 -0.0004 29 1 3.9941 3.1163 -0.4272 30 1 5.0487 0.9438 2.1390 31 1 7.2364 0.9990 3.2251 32 1 9.5287 -0.5782 3.5280 33 1 8.6024 3.8386 0.2819 34 1 6.4071 3.7677 -0.7879 35 1 5.3180 -0.1405 -0.0119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210204043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:38 Heat of formation + Delta-G solvation = 83.692967 kcal Electronic energy + Delta-G solvation = -19742.208093 eV Core-core repulsion = 16704.676048 eV Total energy + Delta-G solvation = -3037.532044 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46058 -38.27854 -36.50395 -35.46798 -33.68418 -33.41841 -30.64233 -29.79881 -28.57579 -27.55492 -24.99022 -24.10350 -22.10985 -21.27318 -20.36511 -19.18045 -17.50729 -17.27778 -16.56636 -15.84840 -15.23017 -14.75605 -14.57917 -14.09183 -13.62588 -13.33546 -13.19006 -13.07082 -12.95642 -12.75154 -12.65082 -12.53057 -12.25220 -12.10369 -11.89616 -11.73502 -11.20663 -11.05021 -10.76524 -10.52372 -9.99172 -9.62153 -9.50433 -9.42764 -9.17923 -8.16096 -7.78069 -6.93603 -6.78525 -4.41630 0.82556 1.34669 2.57226 2.71432 2.86249 2.97798 3.01237 3.03308 3.16277 3.64045 3.83845 3.90615 4.07158 4.48546 4.62766 4.92824 4.97434 5.09649 5.40559 5.47560 5.49367 5.55999 5.78197 5.97379 6.05014 6.07675 6.20629 6.48194 6.69097 6.80849 6.88749 7.05523 7.20868 7.38620 7.52028 7.55605 7.84965 7.89447 8.01761 8.11720 8.17895 8.44950 8.72405 8.78964 10.05730 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.003871 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.066459 B = 7232.344253 C = 8090.917686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.040 4.040 3 C -0.165 4.165 4 C 0.197 3.803 5 N -0.650 5.650 6 C 0.000 4.000 7 C -0.114 4.114 8 C -0.142 4.142 9 C 0.105 3.895 10 C -0.456 4.456 11 H 0.079 0.921 12 C 0.074 3.926 13 N -0.789 5.789 14 Si 0.910 3.090 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.207 4.207 19 C -0.105 4.105 20 C 0.060 3.940 21 N -0.412 5.412 22 C 0.096 3.904 23 C 0.288 3.712 24 N -0.427 5.427 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.400 0.600 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.284 0.716 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.757 4.242 -3.732 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.045 4.045 3 C -0.195 4.195 4 C 0.087 3.913 5 N -0.268 5.268 6 C -0.093 4.093 7 C -0.135 4.135 8 C -0.162 4.162 9 C 0.102 3.898 10 C -0.485 4.485 11 H 0.097 0.903 12 C -0.144 4.144 13 N -0.413 5.413 14 Si 0.734 3.266 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.227 4.227 19 C -0.125 4.125 20 C -0.109 4.109 21 N -0.121 5.121 22 C -0.042 4.042 23 C -0.028 4.028 24 N -0.105 5.105 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.236 0.764 30 H 0.110 0.890 31 H 0.139 0.861 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.024 1.646 -3.570 10.768 hybrid contribution 0.493 1.475 0.360 1.596 sum -9.531 3.121 -3.210 10.530 Atomic orbital electron populations 1.20836 0.90169 1.03402 1.03011 1.20378 0.96716 0.91739 0.95691 1.20934 0.91974 0.98155 1.08431 1.19097 0.90980 0.88851 0.92362 1.41579 1.17532 1.09191 1.58468 1.17135 0.85279 1.08678 0.98230 1.20335 0.97736 1.00528 0.94886 1.20944 0.91218 1.02821 1.01169 1.17656 0.92835 0.89814 0.89531 1.19539 1.01464 1.00329 1.27150 0.90269 1.25926 0.98212 0.94492 0.95817 1.69808 1.37858 1.00106 1.33568 0.86326 0.81059 0.78583 0.80596 1.18769 1.20221 1.18942 1.20619 0.96084 1.07206 0.98839 1.20066 0.92970 1.00636 0.98829 1.22766 1.00788 0.85275 1.02027 1.67386 1.05818 1.31323 1.07557 1.15990 0.89095 0.86312 1.12768 1.25029 0.92721 0.91954 0.93101 1.81186 1.09796 1.09633 1.09843 0.90287 0.91340 0.90495 0.84292 0.76422 0.88997 0.86130 0.90497 0.88450 0.88976 0.81174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.62 36.00 0.35 -0.68 16 2 C -0.04 -0.48 5.92 -104.12 -0.62 -1.09 16 3 C -0.17 -1.95 9.77 -39.13 -0.38 -2.33 16 4 C 0.20 2.85 5.88 -83.63 -0.49 2.35 16 5 N -0.65 -9.52 5.39 -8.18 -0.04 -9.57 16 6 C 0.00 0.00 5.83 -83.68 -0.49 -0.48 16 7 C -0.11 -2.38 7.97 -39.77 -0.32 -2.70 16 8 C -0.14 -3.34 8.61 -39.27 -0.34 -3.68 16 9 C 0.10 2.53 5.55 -106.79 -0.59 1.94 16 10 C -0.46 -11.17 9.03 -37.89 -0.34 -11.51 16 11 H 0.08 1.86 7.89 -52.49 -0.41 1.44 16 12 C 0.07 1.74 5.16 -17.34 -0.09 1.65 16 13 N -0.79 -19.25 10.99 55.54 0.61 -18.64 16 14 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 15 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 16 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 18 C -0.21 -4.51 9.74 -39.27 -0.38 -4.89 16 19 C -0.10 -2.01 9.89 -39.77 -0.39 -2.40 16 20 C 0.06 0.99 9.24 -17.31 -0.16 0.83 16 21 N -0.41 -6.93 10.26 -10.90 -0.11 -7.05 16 22 C 0.10 1.42 6.59 -84.96 -0.56 0.86 16 23 C 0.29 4.39 14.00 -22.47 -0.31 4.07 16 24 N -0.43 -6.95 18.54 41.84 0.78 -6.17 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.64 7.09 -51.93 -0.37 0.28 16 27 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 29 H 0.40 4.72 8.91 -40.82 -0.36 4.36 16 30 H 0.09 1.84 6.86 -52.49 -0.36 1.48 16 31 H 0.12 3.00 6.27 -52.48 -0.33 2.67 16 32 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 33 H 0.10 2.00 8.06 -52.49 -0.42 1.57 16 34 H 0.09 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.17 3.08 6.79 -52.49 -0.36 2.72 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -25.99 311.40 -7.67 -33.66 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.44 Total: 8.54 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -5.12 Total: -18.07 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 1.23 Total: -41.42 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.99 -7.67 -33.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210204043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.351 kcal (2) G-P(sol) polarization free energy of solvation -25.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds