Wall clock time and date at job start Tue Mar 31 2020 00:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38213 * 120.42272 * 2 1 4 4 C 1.39485 * 118.44503 * 180.02562 * 3 2 1 5 5 N 1.39174 * 120.39104 * 179.97438 * 4 3 2 6 6 C 1.38822 * 119.99558 * 149.52573 * 5 4 3 7 7 C 1.39605 * 119.84512 * 326.79562 * 6 5 4 8 8 C 1.36310 * 120.15734 * 180.27917 * 7 6 5 9 9 C 1.40896 * 119.84152 * 0.02562 * 8 7 6 10 10 C 1.41108 * 120.15498 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99866 * 207.24279 * 10 9 8 12 12 C 1.39856 * 119.99756 * 27.23479 * 10 9 8 13 13 N 1.30901 * 120.00006 * 15.51820 * 12 10 9 14 14 Si 1.86805 * 119.99934 * 195.51702 * 12 10 9 15 15 H 1.48493 * 109.46996 * 60.00076 * 14 12 10 16 16 H 1.48496 * 109.47052 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46939 * 300.00343 * 14 12 10 18 18 C 1.40905 * 119.69441 * 0.02562 * 9 8 7 19 19 C 1.36311 * 119.83538 * 359.97438 * 18 9 8 20 20 C 1.39413 * 119.21465 * 0.27341 * 4 3 2 21 21 N 1.31384 * 120.78159 * 359.42755 * 20 4 3 22 22 C 1.32915 * 121.69556 * 0.58445 * 21 20 4 23 23 C 1.43201 * 119.64377 * 179.68380 * 22 21 20 24 24 N 3.47704 * 80.49519 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47004 * 90.00507 * 1 2 3 26 26 H 1.09006 * 109.47130 * 210.00315 * 1 2 3 27 27 H 1.09004 * 109.47592 * 330.00354 * 1 2 3 28 28 H 1.08003 * 120.77883 * 359.97438 * 3 2 1 29 29 H 0.96994 * 120.00364 * 329.51880 * 5 4 3 30 30 H 1.07994 * 119.92011 * 0.28229 * 7 6 5 31 31 H 1.08007 * 120.07584 * 180.02562 * 8 7 6 32 32 H 0.96997 * 119.99884 * 179.97438 * 13 12 10 33 33 H 1.08001 * 120.08210 * 179.97438 * 18 9 8 34 34 H 1.08001 * 119.91669 * 179.97438 * 19 18 9 35 35 H 1.07999 * 119.60895 * 179.72306 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1918 0.0000 4 6 3.6009 1.1437 -0.0005 5 7 4.3460 2.3192 -0.0011 6 6 5.5930 2.3507 0.6081 7 6 5.8323 1.5719 1.7418 8 6 7.0526 1.6024 2.3484 9 6 8.0734 2.4228 1.8290 10 6 9.3390 2.4599 2.4520 11 1 9.9547 3.3435 2.3718 12 6 9.7958 1.3523 3.1735 13 7 9.2116 0.1900 3.0279 14 14 11.2397 1.5317 4.3451 15 1 10.9060 2.5296 5.3928 16 1 11.5260 0.2212 4.9821 17 1 12.4353 1.9867 3.5910 18 6 7.8245 3.2071 0.6851 19 6 6.5995 3.1668 0.0887 20 6 4.2389 -0.0958 -0.0069 21 7 3.5431 -1.2103 -0.0010 22 6 2.2140 -1.2037 -0.0005 23 6 1.4996 -2.4448 -0.0008 24 7 0.9328 -3.4293 -0.0015 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6866 2.1383 -0.0004 29 1 3.9941 3.1163 -0.4272 30 1 5.0487 0.9438 2.1390 31 1 7.2364 0.9990 3.2251 32 1 9.5287 -0.5782 3.5280 33 1 8.6024 3.8386 0.2819 34 1 6.4071 3.7677 -0.7879 35 1 5.3180 -0.1405 -0.0119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210204043.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:38 Heat of formation + Delta-G solvation = 70.206282 kcal Electronic energy + Delta-G solvation = -19742.792919 eV Core-core repulsion = 16704.676048 eV Total energy + Delta-G solvation = -3038.116871 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65494 -39.80045 -37.82503 -36.87178 -35.07355 -34.68727 -32.02437 -31.46653 -30.07768 -28.52046 -26.56389 -25.35897 -23.37291 -22.90582 -21.83837 -20.36130 -19.22575 -18.57367 -17.83022 -17.25389 -16.80993 -15.94863 -15.79665 -15.59098 -15.16017 -14.56044 -14.43023 -14.23418 -14.13074 -13.94841 -13.83431 -13.78436 -13.65495 -13.56249 -13.32978 -12.93032 -12.77009 -12.56417 -12.33393 -12.01609 -11.64088 -11.25832 -11.00830 -10.67007 -10.34173 -9.62841 -9.44342 -8.62553 -8.28601 -6.19369 -0.33836 0.25718 0.96922 1.15534 1.40860 1.48513 1.50619 1.53276 1.84452 2.22911 2.42129 2.71183 2.76290 2.92763 3.64592 3.74980 3.84506 4.00684 4.01310 4.38737 4.44718 4.48567 4.57913 4.78881 4.94400 5.04832 5.08283 5.15287 5.17006 5.22028 5.35850 5.45206 5.65302 5.72024 5.91713 6.10911 6.27604 6.33660 6.49042 6.70486 6.79888 6.95452 6.97635 7.09740 8.36754 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.003871 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.066459 B = 7232.344253 C = 8090.917686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.026 4.026 3 C -0.138 4.138 4 C 0.193 3.807 5 N -0.644 5.644 6 C 0.035 3.965 7 C -0.121 4.121 8 C -0.163 4.163 9 C 0.070 3.930 10 C -0.497 4.497 11 H 0.077 0.923 12 C 0.035 3.965 13 N -0.829 5.829 14 Si 0.977 3.023 15 H -0.260 1.260 16 H -0.273 1.273 17 H -0.260 1.260 18 C -0.214 4.214 19 C -0.107 4.107 20 C 0.040 3.960 21 N -0.442 5.442 22 C 0.087 3.913 23 C 0.298 3.702 24 N -0.447 5.447 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.184 0.816 29 H 0.421 0.579 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.286 0.714 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.486 5.965 -4.827 14.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.032 4.032 3 C -0.167 4.167 4 C 0.084 3.916 5 N -0.266 5.266 6 C -0.059 4.059 7 C -0.141 4.141 8 C -0.183 4.183 9 C 0.067 3.933 10 C -0.526 4.526 11 H 0.096 0.904 12 C -0.180 4.180 13 N -0.456 5.456 14 Si 0.798 3.202 15 H -0.185 1.185 16 H -0.198 1.198 17 H -0.184 1.184 18 C -0.234 4.234 19 C -0.127 4.127 20 C -0.127 4.127 21 N -0.151 5.151 22 C -0.051 4.051 23 C -0.017 4.017 24 N -0.125 5.125 25 H 0.117 0.883 26 H 0.079 0.921 27 H 0.124 0.876 28 H 0.201 0.799 29 H 0.260 0.740 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.123 0.877 34 H 0.149 0.851 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.787 3.381 -4.693 14.035 hybrid contribution 0.998 0.887 0.525 1.435 sum -11.790 4.268 -4.167 13.213 Atomic orbital electron populations 1.20961 0.87237 1.04527 1.04565 1.20750 0.98602 0.90474 0.93337 1.21355 0.90450 0.99803 1.05109 1.19109 0.92155 0.87698 0.92626 1.41327 1.16142 1.10259 1.58864 1.17115 0.86620 1.05786 0.96418 1.20376 0.96865 1.01190 0.95700 1.20826 0.92586 1.03553 1.01339 1.17944 0.93139 0.91216 0.90978 1.19756 1.02307 1.00969 1.29612 0.90445 1.26676 1.00623 0.93827 0.96850 1.69889 1.39856 1.00767 1.35055 0.85318 0.77899 0.78509 0.78430 1.18476 1.19761 1.18377 1.20841 0.97584 1.06749 0.98250 1.20385 0.91863 1.00861 0.99579 1.22440 0.99849 0.86493 1.03967 1.67240 1.07186 1.32075 1.08638 1.16253 0.88630 0.87233 1.13008 1.25129 0.92260 0.91847 0.92486 1.81195 1.10663 1.10043 1.10580 0.88326 0.92050 0.87584 0.79897 0.73996 0.88657 0.88609 0.90397 0.87711 0.85141 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.47 9.62 71.24 0.69 -0.78 16 2 C -0.03 -0.52 5.92 -19.54 -0.12 -0.64 16 3 C -0.14 -2.57 9.77 22.56 0.22 -2.35 16 4 C 0.19 5.00 5.88 38.56 0.23 5.22 16 5 N -0.64 -16.70 5.39 -179.78 -0.97 -17.66 16 6 C 0.04 1.27 5.83 38.69 0.23 1.49 16 7 C -0.12 -5.10 7.97 22.15 0.18 -4.92 16 8 C -0.16 -8.09 8.61 22.47 0.19 -7.90 16 9 C 0.07 3.52 5.55 -21.27 -0.12 3.41 16 10 C -0.50 -25.63 9.03 23.37 0.21 -25.42 16 11 H 0.08 3.82 7.89 -2.91 -0.02 3.80 16 12 C 0.03 1.70 5.16 85.22 0.44 2.14 16 13 N -0.83 -43.01 10.99 21.81 0.24 -42.78 16 14 Si 0.98 37.60 29.59 68.60 2.03 39.63 16 15 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 16 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 18 C -0.21 -9.36 9.74 22.47 0.22 -9.14 16 19 C -0.11 -3.89 9.89 22.15 0.22 -3.67 16 20 C 0.04 1.29 9.24 85.04 0.79 2.08 16 21 N -0.44 -14.74 10.26 -188.40 -1.93 -16.67 16 22 C 0.09 2.41 6.59 40.55 0.27 2.68 16 23 C 0.30 8.71 14.00 88.33 1.24 9.95 16 24 N -0.45 -14.09 18.54 19.00 0.35 -13.74 16 25 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 0.92 7.09 -2.38 -0.02 0.91 16 27 H 0.11 0.81 8.09 -2.39 -0.02 0.79 16 28 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 29 H 0.42 7.84 8.91 -92.71 -0.83 7.01 16 30 H 0.10 3.88 6.86 -2.91 -0.02 3.86 16 31 H 0.10 5.15 6.27 -2.91 -0.02 5.13 16 32 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 33 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 34 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.14 5.38 6.79 -2.91 -0.02 5.36 16 Total: -1.00 -60.83 311.40 4.91 -55.92 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.32 Total: 23.15 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 4.87 Total: -27.86 kcal Atomic # 7 Polarization: -88.53 SS G_CDS: -2.31 Total: -90.85 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Total: -60.83 4.91 -55.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210204043.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.127 kcal (2) G-P(sol) polarization free energy of solvation -60.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds