Wall clock time and date at job start Tue Mar 31 2020 00:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38222 * 120.42196 * 2 1 4 4 C 1.39449 * 118.44383 * 180.24356 * 3 2 1 5 5 N 1.39260 * 120.38993 * 179.72311 * 4 3 2 6 6 C 1.39716 * 120.00071 * 330.95617 * 5 4 3 7 7 C 1.39349 * 119.95654 * 328.91561 * 6 5 4 8 8 C 1.38469 * 120.42628 * 179.72468 * 7 6 5 9 9 C 1.37696 * 120.32572 * 0.55023 * 8 7 6 10 10 C 1.40754 * 119.89342 * 359.72437 * 9 8 7 11 11 C 1.41407 * 120.20270 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99887 * 159.50682 * 11 10 9 13 13 C 1.39930 * 120.00540 * 339.51274 * 11 10 9 14 14 N 1.30828 * 119.99691 * 338.02887 * 13 11 10 15 15 Si 1.86796 * 120.00273 * 158.02552 * 13 11 10 16 16 H 1.48501 * 109.47033 * 94.68021 * 15 13 11 17 17 H 1.48494 * 109.47113 * 214.68218 * 15 13 11 18 18 H 1.48501 * 109.47246 * 334.68189 * 15 13 11 19 19 C 1.38301 * 119.95366 * 149.19040 * 6 5 4 20 20 C 1.39387 * 119.22094 * 359.75207 * 4 3 2 21 21 N 1.31386 * 120.78752 * 359.97438 * 20 4 3 22 22 C 1.32907 * 121.69428 * 0.02562 * 21 20 4 23 23 C 1.43204 * 119.64821 * 179.97438 * 22 21 20 24 24 N 3.47711 * 80.49634 * 179.75927 * 2 1 3 25 25 H 1.09008 * 109.46674 * 270.25504 * 1 2 3 26 26 H 1.08997 * 109.47053 * 30.25105 * 1 2 3 27 27 H 1.09002 * 109.47086 * 150.26007 * 1 2 3 28 28 H 1.07994 * 120.78291 * 359.97438 * 3 2 1 29 29 H 0.97003 * 120.00257 * 150.95191 * 5 4 3 30 30 H 1.08001 * 119.78512 * 359.97438 * 7 6 5 31 31 H 1.07994 * 119.83735 * 180.25840 * 8 7 6 32 32 H 1.07998 * 120.05130 * 179.70670 * 9 8 7 33 33 H 0.96996 * 120.00291 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.16224 * 359.97438 * 19 6 5 35 35 H 1.07994 * 119.60432 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 6 3.6006 1.1438 -0.0052 5 7 4.3462 2.3200 -0.0112 6 6 3.8244 3.4748 -0.5997 7 6 2.9560 3.3714 -1.6846 8 6 2.4288 4.5093 -2.2717 9 6 2.7661 5.7568 -1.7965 10 6 3.6466 5.8773 -0.7050 11 6 3.9978 7.1552 -0.2120 12 1 4.3852 7.2595 0.7908 13 6 3.8435 8.2849 -1.0232 14 7 3.7973 8.1545 -2.3242 15 14 3.7034 9.9789 -0.2488 16 1 5.0432 10.6183 -0.2109 17 1 2.7779 10.8161 -1.0536 18 1 3.1777 9.8491 1.1340 19 6 4.1750 4.7191 -0.1083 20 6 4.2387 -0.0955 -0.0050 21 7 3.5431 -1.2101 0.0006 22 6 2.2140 -1.2037 0.0057 23 6 1.4997 -2.4448 0.0111 24 7 0.9330 -3.4294 0.0144 25 1 -0.3633 0.0046 1.0278 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6868 2.1383 -0.0004 29 1 5.2277 2.3376 0.3932 30 1 2.6893 2.3974 -2.0675 31 1 1.7534 4.4180 -3.1094 32 1 2.3560 6.6415 -2.2608 33 1 3.6899 8.9375 -2.8866 34 1 4.8512 4.8007 0.7299 35 1 5.3177 -0.1400 -0.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001210207433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:41 Heat of formation + Delta-G solvation = 81.521044 kcal Electronic energy + Delta-G solvation = -19727.326755 eV Core-core repulsion = 16689.700529 eV Total energy + Delta-G solvation = -3037.626226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.57775 -38.23680 -36.57560 -35.49681 -33.76106 -33.46761 -30.71619 -29.99714 -27.86910 -27.61610 -25.47193 -24.04950 -22.36590 -20.99016 -20.58479 -19.23073 -17.85849 -17.16853 -16.34079 -15.59503 -15.14313 -14.82058 -14.77896 -14.52610 -13.63717 -13.32942 -13.18277 -13.14386 -13.01846 -12.85632 -12.73342 -12.61595 -12.40723 -12.01300 -11.92203 -11.58146 -11.22278 -10.89182 -10.70823 -10.55027 -10.15947 -9.69903 -9.65039 -9.36136 -9.18025 -8.33242 -7.71294 -6.97385 -6.74902 -4.54047 0.71797 1.26134 2.60834 2.61394 2.72224 2.97266 2.99140 3.03483 3.12891 3.49914 3.77296 3.81073 3.95688 4.43081 4.54881 4.85677 4.91775 5.03054 5.38271 5.47956 5.51261 5.52678 5.86493 6.01342 6.12468 6.14396 6.23745 6.40466 6.74236 6.81202 6.84694 6.98328 7.06031 7.42192 7.44719 7.55678 7.81355 7.83992 7.91159 8.04134 8.14468 8.46594 8.71181 8.78239 9.97098 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038477 B = 0.003432 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.540694 B = 8155.605617 C = 8418.110828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.041 4.041 3 C -0.133 4.133 4 C 0.198 3.802 5 N -0.667 5.667 6 C 0.172 3.828 7 C -0.272 4.272 8 C -0.082 4.082 9 C -0.181 4.181 10 C 0.129 3.871 11 C -0.458 4.458 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.780 5.780 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.259 1.259 19 C -0.256 4.256 20 C 0.037 3.963 21 N -0.415 5.415 22 C 0.107 3.893 23 C 0.287 3.713 24 N -0.422 5.422 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.154 0.846 29 H 0.407 0.593 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.120 0.880 33 H 0.283 0.717 34 H 0.095 0.905 35 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.849 -6.052 3.189 7.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.047 4.047 3 C -0.162 4.162 4 C 0.090 3.910 5 N -0.286 5.286 6 C 0.079 3.921 7 C -0.293 4.293 8 C -0.101 4.101 9 C -0.201 4.201 10 C 0.125 3.875 11 C -0.487 4.487 12 H 0.098 0.902 13 C -0.141 4.141 14 N -0.404 5.404 15 Si 0.730 3.270 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.182 1.182 19 C -0.278 4.278 20 C -0.130 4.130 21 N -0.123 5.123 22 C -0.032 4.032 23 C -0.029 4.029 24 N -0.100 5.100 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.171 0.829 29 H 0.243 0.757 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.363 -8.126 2.899 8.945 hybrid contribution 0.343 2.049 0.310 2.101 sum -2.020 -6.076 3.209 7.162 Atomic orbital electron populations 1.20873 0.89873 1.03680 1.03258 1.20513 0.97168 0.91522 0.95457 1.21364 0.92463 0.98843 1.03546 1.19094 0.91930 0.87842 0.92122 1.42180 1.19221 1.06945 1.60272 1.17423 0.97321 0.84272 0.93086 1.20112 1.10324 0.97272 1.01633 1.20502 0.98719 0.92826 0.98063 1.21378 1.01606 0.95996 1.01075 1.17371 0.88199 0.91740 0.90169 1.19596 1.37784 0.90775 1.00504 0.90232 1.25951 0.91957 1.01868 0.94343 1.69843 1.32986 1.32882 1.04697 0.86329 0.79145 0.80849 0.80680 1.19454 1.19871 1.18245 1.20602 1.10079 0.90774 1.06390 1.22372 0.99996 0.85439 1.05168 1.67263 1.06140 1.30965 1.07956 1.15971 0.88888 0.86401 1.11982 1.24985 0.92820 0.91898 0.93240 1.81201 1.09486 1.09793 1.09526 0.90110 0.89959 0.91336 0.82885 0.75652 0.89056 0.89011 0.86207 0.90574 0.88636 0.81997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.62 36.01 0.35 -0.86 16 2 C -0.04 -0.52 5.92 -104.12 -0.62 -1.13 16 3 C -0.13 -1.83 7.69 -39.14 -0.30 -2.13 16 4 C 0.20 2.75 5.96 -83.61 -0.50 2.25 16 5 N -0.67 -9.94 5.44 -8.33 -0.05 -9.99 16 6 C 0.17 3.28 5.91 -83.83 -0.50 2.79 16 7 C -0.27 -5.34 7.92 -39.08 -0.31 -5.65 16 8 C -0.08 -1.73 10.02 -39.69 -0.40 -2.13 16 9 C -0.18 -4.27 8.74 -38.83 -0.34 -4.61 16 10 C 0.13 3.10 5.60 -106.85 -0.60 2.50 16 11 C -0.46 -11.13 9.04 -37.74 -0.34 -11.47 16 12 H 0.08 1.86 7.94 -52.48 -0.42 1.44 16 13 C 0.08 1.82 5.08 -17.35 -0.09 1.73 16 14 N -0.78 -18.63 10.95 55.55 0.61 -18.03 16 15 Si 0.91 17.20 29.61 -169.99 -5.03 12.16 16 16 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 17 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 C -0.26 -5.51 9.69 -38.67 -0.37 -5.89 16 20 C 0.04 0.47 11.11 -17.31 -0.19 0.28 16 21 N -0.41 -5.82 10.26 -10.91 -0.11 -5.93 16 22 C 0.11 1.45 6.59 -84.97 -0.56 0.90 16 23 C 0.29 4.05 14.00 -22.47 -0.31 3.73 16 24 N -0.42 -6.43 18.54 41.84 0.78 -5.65 16 25 H 0.08 0.72 8.14 -51.92 -0.42 0.29 16 26 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 27 H 0.07 0.68 7.09 -51.93 -0.37 0.31 16 28 H 0.15 2.24 6.68 -52.49 -0.35 1.89 16 29 H 0.41 5.09 8.90 -40.82 -0.36 4.72 16 30 H 0.09 1.67 6.65 -52.49 -0.35 1.32 16 31 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.12 2.95 6.02 -52.49 -0.32 2.63 16 33 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 34 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 35 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -25.93 311.00 -7.61 -33.54 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.41 Total: 8.90 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.08 Total: -19.69 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 1.23 Total: -39.60 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.93 -7.61 -33.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210207433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.062 kcal (2) G-P(sol) polarization free energy of solvation -25.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds