Wall clock time and date at job start Tue Mar 31 2020 00:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38222 * 120.42196 * 2 1 4 4 C 1.39449 * 118.44383 * 180.24356 * 3 2 1 5 5 N 1.39260 * 120.38993 * 179.72311 * 4 3 2 6 6 C 1.39716 * 120.00071 * 330.95617 * 5 4 3 7 7 C 1.39349 * 119.95654 * 328.91561 * 6 5 4 8 8 C 1.38469 * 120.42628 * 179.72468 * 7 6 5 9 9 C 1.37696 * 120.32572 * 0.55023 * 8 7 6 10 10 C 1.40754 * 119.89342 * 359.72437 * 9 8 7 11 11 C 1.41407 * 120.20270 * 179.97438 * 10 9 8 12 12 H 1.08010 * 119.99887 * 159.50682 * 11 10 9 13 13 C 1.39930 * 120.00540 * 339.51274 * 11 10 9 14 14 N 1.30828 * 119.99691 * 338.02887 * 13 11 10 15 15 Si 1.86796 * 120.00273 * 158.02552 * 13 11 10 16 16 H 1.48501 * 109.47033 * 94.68021 * 15 13 11 17 17 H 1.48494 * 109.47113 * 214.68218 * 15 13 11 18 18 H 1.48501 * 109.47246 * 334.68189 * 15 13 11 19 19 C 1.38301 * 119.95366 * 149.19040 * 6 5 4 20 20 C 1.39387 * 119.22094 * 359.75207 * 4 3 2 21 21 N 1.31386 * 120.78752 * 359.97438 * 20 4 3 22 22 C 1.32907 * 121.69428 * 0.02562 * 21 20 4 23 23 C 1.43204 * 119.64821 * 179.97438 * 22 21 20 24 24 N 3.47711 * 80.49634 * 179.75927 * 2 1 3 25 25 H 1.09008 * 109.46674 * 270.25504 * 1 2 3 26 26 H 1.08997 * 109.47053 * 30.25105 * 1 2 3 27 27 H 1.09002 * 109.47086 * 150.26007 * 1 2 3 28 28 H 1.07994 * 120.78291 * 359.97438 * 3 2 1 29 29 H 0.97003 * 120.00257 * 150.95191 * 5 4 3 30 30 H 1.08001 * 119.78512 * 359.97438 * 7 6 5 31 31 H 1.07994 * 119.83735 * 180.25840 * 8 7 6 32 32 H 1.07998 * 120.05130 * 179.70670 * 9 8 7 33 33 H 0.96996 * 120.00291 * 179.97438 * 14 13 11 34 34 H 1.08005 * 120.16224 * 359.97438 * 19 6 5 35 35 H 1.07994 * 119.60432 * 180.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1919 0.0000 4 6 3.6006 1.1438 -0.0052 5 7 4.3462 2.3200 -0.0112 6 6 3.8244 3.4748 -0.5997 7 6 2.9560 3.3714 -1.6846 8 6 2.4288 4.5093 -2.2717 9 6 2.7661 5.7568 -1.7965 10 6 3.6466 5.8773 -0.7050 11 6 3.9978 7.1552 -0.2120 12 1 4.3852 7.2595 0.7908 13 6 3.8435 8.2849 -1.0232 14 7 3.7973 8.1545 -2.3242 15 14 3.7034 9.9789 -0.2488 16 1 5.0432 10.6183 -0.2109 17 1 2.7779 10.8161 -1.0536 18 1 3.1777 9.8491 1.1340 19 6 4.1750 4.7191 -0.1083 20 6 4.2387 -0.0955 -0.0050 21 7 3.5431 -1.2101 0.0006 22 6 2.2140 -1.2037 0.0057 23 6 1.4997 -2.4448 0.0111 24 7 0.9330 -3.4294 0.0144 25 1 -0.3633 0.0046 1.0278 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8923 -0.5098 28 1 1.6868 2.1383 -0.0004 29 1 5.2277 2.3376 0.3932 30 1 2.6893 2.3974 -2.0675 31 1 1.7534 4.4180 -3.1094 32 1 2.3560 6.6415 -2.2608 33 1 3.6899 8.9375 -2.8866 34 1 4.8512 4.8007 0.7299 35 1 5.3177 -0.1400 -0.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210207433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:40 Heat of formation + Delta-G solvation = 68.966332 kcal Electronic energy + Delta-G solvation = -19727.871168 eV Core-core repulsion = 16689.700529 eV Total energy + Delta-G solvation = -3038.170639 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.69112 -39.72101 -37.81794 -36.86579 -35.13690 -34.71526 -32.05410 -31.63480 -29.27732 -28.58751 -27.17412 -25.24051 -23.53090 -22.54709 -22.11413 -20.35779 -19.37415 -18.38862 -17.64165 -17.11786 -16.58869 -16.34358 -15.91266 -15.68216 -15.14036 -14.68249 -14.37948 -14.28447 -14.18179 -14.00641 -13.92355 -13.78506 -13.67199 -13.47685 -13.15402 -12.85787 -12.76514 -12.53970 -12.19778 -11.99617 -11.78246 -11.33831 -10.94299 -10.74090 -10.36602 -9.67506 -9.42011 -8.67018 -8.17239 -6.32877 -0.38840 0.21438 0.99939 1.16016 1.41774 1.49044 1.51255 1.57835 1.85185 2.21016 2.30913 2.66465 2.72069 2.89847 3.58707 3.76921 3.82304 3.90940 3.97235 4.41219 4.48084 4.57773 4.64731 4.71822 4.96996 5.05000 5.10227 5.11182 5.12773 5.22522 5.34051 5.38944 5.53582 5.87127 5.93285 6.13910 6.21599 6.33170 6.48472 6.71884 6.77436 6.80430 6.96191 7.08422 8.29870 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.038477 B = 0.003432 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.540694 B = 8155.605617 C = 8418.110828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.031 4.031 3 C -0.140 4.140 4 C 0.189 3.811 5 N -0.662 5.662 6 C 0.191 3.809 7 C -0.266 4.266 8 C -0.082 4.082 9 C -0.212 4.212 10 C 0.102 3.898 11 C -0.495 4.495 12 H 0.077 0.923 13 C 0.041 3.959 14 N -0.813 5.813 15 Si 0.975 3.025 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.259 1.259 19 C -0.271 4.271 20 C 0.052 3.948 21 N -0.430 5.430 22 C 0.102 3.898 23 C 0.299 3.701 24 N -0.443 5.443 25 H 0.095 0.905 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.420 0.580 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.289 0.711 34 H 0.102 0.898 35 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 -7.063 3.658 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.036 4.036 3 C -0.169 4.169 4 C 0.082 3.918 5 N -0.284 5.284 6 C 0.096 3.904 7 C -0.288 4.288 8 C -0.101 4.101 9 C -0.232 4.232 10 C 0.099 3.901 11 C -0.524 4.524 12 H 0.095 0.905 13 C -0.176 4.176 14 N -0.438 5.438 15 Si 0.796 3.204 16 H -0.188 1.188 17 H -0.192 1.192 18 H -0.183 1.183 19 C -0.293 4.293 20 C -0.114 4.114 21 N -0.138 5.138 22 C -0.036 4.036 23 C -0.017 4.017 24 N -0.121 5.121 25 H 0.114 0.886 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.259 0.741 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.389 -9.196 3.380 10.085 hybrid contribution 0.334 2.117 0.167 2.150 sum -2.055 -7.079 3.547 8.181 Atomic orbital electron populations 1.20956 0.88137 1.04244 1.04389 1.20650 0.98350 0.90573 0.94045 1.21375 0.92645 0.98894 1.03964 1.19198 0.91967 0.87745 0.92868 1.41962 1.19890 1.06013 1.60486 1.17338 0.95918 0.84914 0.92243 1.20308 1.09699 0.97500 1.01251 1.20741 0.98616 0.92396 0.98339 1.21298 1.03228 0.96425 1.02230 1.17698 0.88798 0.92750 0.90890 1.19835 1.39767 0.91977 1.00838 0.90513 1.26713 0.91131 1.05169 0.94583 1.69890 1.33931 1.34142 1.05836 0.85290 0.79264 0.76245 0.79564 1.18821 1.19172 1.18254 1.20723 1.10600 0.91208 1.06779 1.22751 1.01195 0.84367 1.03118 1.67318 1.06381 1.31497 1.08639 1.16074 0.89037 0.86438 1.12025 1.25014 0.92331 0.91719 0.92624 1.81219 1.10188 1.10390 1.10255 0.88630 0.89010 0.91137 0.83723 0.74134 0.87197 0.87142 0.88120 0.89988 0.88002 0.79162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.12 9.62 71.24 0.69 -1.43 16 2 C -0.03 -0.69 5.92 -19.54 -0.12 -0.81 16 3 C -0.14 -3.52 7.69 22.56 0.17 -3.34 16 4 C 0.19 4.72 5.96 38.53 0.23 4.95 16 5 N -0.66 -18.21 5.44 -180.26 -0.98 -19.19 16 6 C 0.19 7.03 5.91 38.17 0.23 7.26 16 7 C -0.27 -10.03 7.92 22.59 0.18 -9.85 16 8 C -0.08 -3.43 10.02 22.20 0.22 -3.21 16 9 C -0.21 -10.28 8.74 22.76 0.20 -10.08 16 10 C 0.10 5.04 5.60 -21.31 -0.12 4.92 16 11 C -0.50 -24.88 9.04 23.46 0.21 -24.67 16 12 H 0.08 3.72 7.94 -2.91 -0.02 3.69 16 13 C 0.04 1.93 5.08 85.25 0.43 2.36 16 14 N -0.81 -40.03 10.95 21.82 0.24 -39.80 16 15 Si 0.98 35.77 29.61 68.60 2.03 37.80 16 16 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 17 H -0.27 -9.39 7.11 99.48 0.71 -8.69 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 C -0.27 -11.66 9.69 22.86 0.22 -11.44 16 20 C 0.05 1.16 11.11 85.04 0.94 2.11 16 21 N -0.43 -10.89 10.26 -188.43 -1.93 -12.82 16 22 C 0.10 2.55 6.59 40.56 0.27 2.81 16 23 C 0.30 7.85 14.00 88.33 1.24 9.09 16 24 N -0.44 -12.77 18.54 19.01 0.35 -12.41 16 25 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 27 H 0.07 1.24 7.09 -2.39 -0.02 1.22 16 28 H 0.15 3.96 6.68 -2.91 -0.02 3.94 16 29 H 0.42 9.45 8.90 -92.71 -0.83 8.63 16 30 H 0.11 3.73 6.65 -2.91 -0.02 3.71 16 31 H 0.11 4.08 8.06 -2.91 -0.02 4.06 16 32 H 0.10 5.19 6.02 -2.91 -0.02 5.17 16 33 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 34 H 0.10 4.13 8.06 -2.91 -0.02 4.11 16 35 H 0.19 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -56.25 311.00 5.02 -51.23 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.32 Total: 26.53 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 4.99 Total: -31.34 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -2.32 Total: -84.22 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -56.25 5.02 -51.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210207433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.198 kcal (2) G-P(sol) polarization free energy of solvation -56.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds