Wall clock time and date at job start Tue Mar 31 2020 00:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00222 * 2 1 4 4 N 1.46499 * 109.46842 * 125.00177 * 3 2 1 5 5 C 1.34692 * 125.81282 * 125.00226 * 4 3 2 6 6 C 1.37847 * 107.39291 * 179.97438 * 5 4 3 7 7 C 1.48032 * 126.36835 * 179.97438 * 6 5 4 8 8 C 1.39990 * 119.49415 * 0.02562 * 7 6 5 9 9 C 1.35987 * 121.19097 * 180.02562 * 8 7 6 10 10 C 1.41063 * 120.10925 * 0.02562 * 9 8 7 11 11 C 1.40417 * 120.48565 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00121 * 205.40679 * 11 10 9 13 13 C 1.40250 * 120.00097 * 25.41779 * 11 10 9 14 14 N 1.30670 * 120.00394 * 16.91927 * 13 11 10 15 15 Si 1.86808 * 119.99886 * 196.92398 * 13 11 10 16 16 H 1.48499 * 109.46962 * 265.17585 * 15 13 11 17 17 H 1.48494 * 109.46977 * 25.18117 * 15 13 11 18 18 H 1.48503 * 109.46800 * 145.17744 * 15 13 11 19 19 C 1.46649 * 119.02221 * 0.23662 * 10 9 8 20 20 C 1.43202 * 120.56398 * 179.72896 * 19 10 9 21 21 N 9.52942 * 126.47586 * 295.13768 * 3 1 2 22 22 C 1.39083 * 118.86768 * 359.46560 * 19 10 9 23 23 C 1.41079 * 107.27063 * 0.26509 * 6 5 4 24 24 N 1.30556 * 108.11712 * 359.55194 * 23 6 5 25 25 H 1.07996 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99877 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99708 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46682 * 5.00300 * 3 2 1 29 29 H 1.09001 * 109.47459 * 245.00468 * 3 2 1 30 30 H 1.08000 * 126.30463 * 359.96396 * 5 4 3 31 31 H 1.07996 * 119.40400 * 0.02562 * 8 7 6 32 32 H 1.07999 * 119.94267 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00636 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.09626 * 180.27077 * 22 19 10 35 35 H 1.07998 * 125.94456 * 179.73664 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.3206 1.5511 1.0558 6 6 4.8215 1.4937 2.3388 7 6 6.2353 1.6756 2.7381 8 6 7.2006 1.9340 1.7578 9 6 8.5090 2.1063 2.0858 10 6 8.9171 2.0256 3.4337 11 6 10.2662 2.2017 3.7813 12 1 10.6532 1.7568 4.6862 13 6 11.1110 2.9554 2.9536 14 7 10.6014 3.7580 2.0572 15 14 12.9650 2.8117 3.1325 16 1 13.4608 3.8884 4.0269 17 1 13.3050 1.4886 3.7146 18 1 13.6027 2.9439 1.7979 19 6 7.9127 1.7494 4.4659 20 6 8.2914 1.6548 5.8437 21 7 8.5914 1.5820 6.9369 22 6 6.5851 1.5865 4.0845 23 6 3.7374 1.2227 3.2000 24 7 2.6553 1.1342 2.4749 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 4.8877 1.7374 0.1558 31 1 6.9008 1.9978 0.7222 32 1 9.2370 2.3044 1.3130 33 1 11.1857 4.2790 1.4845 34 1 5.8284 1.3868 4.8287 35 1 3.7924 1.1111 4.2727 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222391521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:43 Heat of formation + Delta-G solvation = 135.240961 kcal Electronic energy + Delta-G solvation = -19458.025709 eV Core-core repulsion = 16422.728953 eV Total energy + Delta-G solvation = -3035.296756 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.66074 -37.67508 -35.48840 -35.06140 -34.17082 -31.67975 -30.94991 -29.84758 -28.62810 -26.55875 -24.92263 -22.50325 -21.69236 -20.71429 -20.12075 -19.52721 -17.73598 -17.22300 -16.19984 -15.51222 -15.34295 -15.03448 -14.38591 -13.96527 -13.66834 -13.36955 -13.22751 -12.83037 -12.66119 -12.50418 -12.28908 -11.88099 -11.74436 -11.63678 -11.53280 -11.29632 -11.16447 -10.91790 -10.77096 -10.36034 -9.92614 -9.79489 -9.67734 -9.55983 -9.06751 -8.54233 -7.71957 -7.23410 -6.98831 -4.64569 1.84555 2.05675 2.26691 2.57646 2.88571 2.90542 2.95350 2.97752 3.57395 3.68047 3.93986 4.33254 4.47328 4.54049 4.70047 4.92487 5.20213 5.30720 5.32595 5.45922 5.52409 5.62236 5.95884 6.02058 6.07969 6.27686 6.30156 6.36333 6.40868 6.67828 6.84417 7.01427 7.08037 7.23098 7.33983 7.60594 7.69486 7.84304 7.88536 8.12928 8.23214 8.41687 8.57582 8.84928 9.71843 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.003685 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.963072 B = 7596.283923 C = 8487.911595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.165 4.165 3 C 0.166 3.834 4 N -0.375 5.375 5 C 0.020 3.980 6 C -0.135 4.135 7 C -0.150 4.150 8 C -0.063 4.063 9 C -0.163 4.163 10 C 0.152 3.848 11 C -0.424 4.424 12 H 0.086 0.914 13 C 0.076 3.924 14 N -0.760 5.760 15 Si 0.914 3.086 16 H -0.265 1.265 17 H -0.255 1.255 18 H -0.270 1.270 19 C -0.186 4.186 20 C 0.301 3.699 21 N -0.511 5.511 22 C -0.013 4.013 23 C 0.042 3.958 24 N -0.302 5.302 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.291 0.709 34 H 0.099 0.901 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 -2.562 -9.685 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C 0.044 3.956 4 N -0.158 5.158 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.083 4.083 9 C -0.182 4.182 10 C 0.147 3.853 11 C -0.452 4.452 12 H 0.104 0.896 13 C -0.148 4.148 14 N -0.382 5.382 15 Si 0.737 3.263 16 H -0.190 1.190 17 H -0.179 1.179 18 H -0.194 1.194 19 C -0.192 4.192 20 C -0.009 4.009 21 N -0.190 5.190 22 C -0.034 4.034 23 C -0.144 4.144 24 N -0.124 5.124 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.101 0.899 29 H 0.119 0.881 30 H 0.187 0.813 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -10.916 -2.670 -8.296 13.969 hybrid contribution 1.586 0.254 -0.504 1.683 sum -9.331 -2.417 -8.800 13.052 Atomic orbital electron populations 1.23856 0.95616 1.02173 0.98990 1.23015 0.96222 0.98111 1.01022 1.20656 0.91936 0.96586 0.86374 1.48153 1.05763 1.56514 1.05401 1.22697 0.84333 1.05775 0.99600 1.19303 0.94227 1.10092 0.90985 1.17137 0.89279 1.16285 0.92598 1.20387 0.93224 0.97989 0.96687 1.20885 0.95051 1.06372 0.95901 1.18457 0.91058 0.85742 0.90074 1.19764 0.93774 1.24965 1.06655 0.89580 1.26128 1.02581 0.92824 0.93247 1.69727 1.39011 1.14986 1.14439 0.86160 0.80403 0.80613 0.79109 1.19006 1.17861 1.19440 1.16768 0.93561 1.24597 0.84312 1.25784 0.91512 0.91044 0.92512 1.81018 1.09843 1.15183 1.12976 1.20434 0.93117 0.95491 0.94360 1.23919 0.89893 1.00660 0.99919 1.76994 1.23981 1.24471 0.86910 0.88317 0.88033 0.86929 0.89911 0.88089 0.81318 0.89022 0.85775 0.89814 0.88264 0.80471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 14.32 29.01 0.42 -0.97 16 2 C -0.16 -1.59 9.69 -36.03 -0.35 -1.94 16 3 C 0.17 1.66 6.93 -5.20 -0.04 1.62 16 4 N -0.37 -5.36 3.65 -61.93 -0.23 -5.59 16 5 C 0.02 0.30 10.86 -16.44 -0.18 0.12 16 6 C -0.14 -2.37 6.07 -104.95 -0.64 -3.00 16 7 C -0.15 -2.95 5.88 -104.80 -0.62 -3.57 16 8 C -0.06 -1.26 9.44 -39.73 -0.37 -1.63 16 9 C -0.16 -3.62 8.62 -39.32 -0.34 -3.96 16 10 C 0.15 3.63 5.73 -104.61 -0.60 3.03 16 11 C -0.42 -10.24 8.55 -38.01 -0.33 -10.56 16 12 H 0.09 2.11 7.38 -52.49 -0.39 1.72 16 13 C 0.08 1.68 5.16 -17.29 -0.09 1.59 16 14 N -0.76 -17.04 10.96 55.56 0.61 -16.43 16 15 Si 0.91 16.92 29.59 -169.99 -5.03 11.89 16 16 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 17 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 18 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 19 C -0.19 -4.25 5.93 -104.26 -0.62 -4.87 16 20 C 0.30 7.07 14.29 -22.47 -0.32 6.75 16 21 N -0.51 -12.35 18.54 41.84 0.78 -11.57 16 22 C -0.01 -0.26 9.28 -38.84 -0.36 -0.62 16 23 C 0.04 0.70 11.40 -17.02 -0.19 0.51 16 24 N -0.30 -5.00 12.33 30.83 0.38 -4.62 16 25 H 0.10 0.72 7.84 -52.49 -0.41 0.31 16 26 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 27 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.08 0.75 7.79 -51.93 -0.40 0.35 16 29 H 0.10 0.75 8.06 -51.93 -0.42 0.33 16 30 H 0.17 2.08 7.25 -52.49 -0.38 1.70 16 31 H 0.09 1.57 6.92 -52.49 -0.36 1.20 16 32 H 0.12 2.79 6.20 -52.49 -0.33 2.47 16 33 H 0.29 5.82 8.29 -40.82 -0.34 5.48 16 34 H 0.10 1.81 6.98 -52.49 -0.37 1.44 16 35 H 0.18 2.60 7.30 -52.49 -0.38 2.22 16 LS Contribution 318.70 15.07 4.80 4.80 Total: -1.00 -27.37 318.70 -6.73 -34.10 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.42 Total: 4.93 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -4.62 Total: -17.51 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 1.54 Total: -38.22 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.37 -6.73 -34.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.340 kcal (2) G-P(sol) polarization free energy of solvation -27.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds