Wall clock time and date at job start Tue Mar 31 2020 00:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00222 * 2 1 4 4 N 1.46499 * 109.46842 * 125.00177 * 3 2 1 5 5 C 1.34692 * 125.81282 * 125.00226 * 4 3 2 6 6 C 1.37847 * 107.39291 * 179.97438 * 5 4 3 7 7 C 1.48032 * 126.36835 * 179.97438 * 6 5 4 8 8 C 1.39990 * 119.49415 * 0.02562 * 7 6 5 9 9 C 1.35987 * 121.19097 * 180.02562 * 8 7 6 10 10 C 1.41063 * 120.10925 * 0.02562 * 9 8 7 11 11 C 1.40417 * 120.48565 * 179.97438 * 10 9 8 12 12 H 1.08002 * 120.00121 * 205.40679 * 11 10 9 13 13 C 1.40250 * 120.00097 * 25.41779 * 11 10 9 14 14 N 1.30670 * 120.00394 * 16.91927 * 13 11 10 15 15 Si 1.86808 * 119.99886 * 196.92398 * 13 11 10 16 16 H 1.48499 * 109.46962 * 265.17585 * 15 13 11 17 17 H 1.48494 * 109.46977 * 25.18117 * 15 13 11 18 18 H 1.48503 * 109.46800 * 145.17744 * 15 13 11 19 19 C 1.46649 * 119.02221 * 0.23662 * 10 9 8 20 20 C 1.43202 * 120.56398 * 179.72896 * 19 10 9 21 21 N 9.52942 * 126.47586 * 295.13768 * 3 1 2 22 22 C 1.39083 * 118.86768 * 359.46560 * 19 10 9 23 23 C 1.41079 * 107.27063 * 0.26509 * 6 5 4 24 24 N 1.30556 * 108.11712 * 359.55194 * 23 6 5 25 25 H 1.07996 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99877 * 179.97438 * 1 2 3 27 27 H 1.08005 * 119.99708 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46682 * 5.00300 * 3 2 1 29 29 H 1.09001 * 109.47459 * 245.00468 * 3 2 1 30 30 H 1.08000 * 126.30463 * 359.96396 * 5 4 3 31 31 H 1.07996 * 119.40400 * 0.02562 * 8 7 6 32 32 H 1.07999 * 119.94267 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00636 * 180.02562 * 14 13 11 34 34 H 1.07995 * 120.09626 * 180.27077 * 22 19 10 35 35 H 1.07998 * 125.94456 * 179.73664 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3317 1.1314 5 6 4.3206 1.5511 1.0558 6 6 4.8215 1.4937 2.3388 7 6 6.2353 1.6756 2.7381 8 6 7.2006 1.9340 1.7578 9 6 8.5090 2.1063 2.0858 10 6 8.9171 2.0256 3.4337 11 6 10.2662 2.2017 3.7813 12 1 10.6532 1.7568 4.6862 13 6 11.1110 2.9554 2.9536 14 7 10.6014 3.7580 2.0572 15 14 12.9650 2.8117 3.1325 16 1 13.4608 3.8884 4.0269 17 1 13.3050 1.4886 3.7146 18 1 13.6027 2.9439 1.7979 19 6 7.9127 1.7494 4.4659 20 6 8.2914 1.6548 5.8437 21 7 8.5914 1.5820 6.9369 22 6 6.5851 1.5865 4.0845 23 6 3.7374 1.2227 3.2000 24 7 2.6553 1.1342 2.4749 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4026 -0.9314 30 1 4.8877 1.7374 0.1558 31 1 6.9008 1.9978 0.7222 32 1 9.2370 2.3044 1.3130 33 1 11.1857 4.2790 1.4845 34 1 5.8284 1.3868 4.8287 35 1 3.7924 1.1111 4.2727 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222391521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:42 Heat of formation + Delta-G solvation = 122.777703 kcal Electronic energy + Delta-G solvation = -19458.566156 eV Core-core repulsion = 16422.728953 eV Total energy + Delta-G solvation = -3035.837203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86880 -39.32045 -36.97084 -36.34080 -35.70680 -32.86412 -32.36352 -31.47625 -30.03811 -27.76719 -26.26954 -24.10435 -23.22025 -21.76714 -21.40456 -20.54199 -19.41056 -18.66420 -17.54227 -17.10526 -16.21587 -16.01804 -15.84034 -15.57257 -15.00881 -14.71857 -14.52571 -14.35102 -14.09385 -13.83952 -13.62139 -13.49538 -13.38275 -13.06051 -12.85454 -12.78956 -12.50756 -12.31680 -12.11923 -11.75898 -11.48052 -11.28700 -11.15775 -10.50867 -10.22062 -10.01928 -9.39332 -8.86188 -8.50552 -6.37313 0.47589 0.75740 1.10041 1.20813 1.38770 1.44793 1.52279 1.99710 2.06617 2.10275 2.16623 2.58618 2.80503 3.60057 3.75395 3.80646 3.95852 4.13826 4.15438 4.34078 4.47589 4.56716 4.64102 4.77116 4.86870 4.97471 4.99379 5.03820 5.19606 5.39497 5.57388 5.62863 5.68121 5.74795 5.93887 6.02064 6.19518 6.23358 6.30712 6.52412 6.69750 6.87035 6.91562 7.01803 8.11009 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026840 B = 0.003685 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.963072 B = 7596.283923 C = 8487.911595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.185 4.185 3 C 0.156 3.844 4 N -0.367 5.367 5 C 0.045 3.955 6 C -0.176 4.176 7 C -0.132 4.132 8 C -0.059 4.059 9 C -0.176 4.176 10 C 0.129 3.871 11 C -0.463 4.463 12 H 0.067 0.933 13 C 0.046 3.954 14 N -0.782 5.782 15 Si 0.975 3.025 16 H -0.266 1.266 17 H -0.264 1.264 18 H -0.250 1.250 19 C -0.207 4.207 20 C 0.305 3.695 21 N -0.533 5.533 22 C -0.022 4.022 23 C 0.035 3.965 24 N -0.323 5.323 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.202 0.798 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.301 0.699 34 H 0.117 0.883 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -2.458 -12.013 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.204 4.204 3 C 0.036 3.964 4 N -0.149 5.149 5 C -0.102 4.102 6 C -0.187 4.187 7 C -0.134 4.134 8 C -0.078 4.078 9 C -0.196 4.196 10 C 0.124 3.876 11 C -0.490 4.490 12 H 0.085 0.915 13 C -0.175 4.175 14 N -0.405 5.405 15 Si 0.795 3.205 16 H -0.191 1.191 17 H -0.188 1.188 18 H -0.174 1.174 19 C -0.213 4.213 20 C -0.003 4.003 21 N -0.214 5.214 22 C -0.043 4.043 23 C -0.150 4.150 24 N -0.145 5.145 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.122 0.878 28 H 0.113 0.887 29 H 0.150 0.850 30 H 0.218 0.782 31 H 0.143 0.857 32 H 0.136 0.864 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -12.493 -2.570 -10.638 16.609 hybrid contribution 1.732 0.186 0.069 1.744 sum -10.761 -2.384 -10.569 15.270 Atomic orbital electron populations 1.24083 0.95298 1.03285 0.96712 1.22960 0.96713 0.97650 1.03089 1.21099 0.92107 0.97192 0.85973 1.48583 1.06230 1.54494 1.05638 1.23180 0.84760 1.02484 0.99752 1.19250 0.93243 1.13690 0.92521 1.17386 0.90595 1.13362 0.92062 1.20705 0.92227 0.96356 0.98498 1.20890 0.96109 1.07516 0.95055 1.18742 0.91351 0.86419 0.91097 1.19809 0.94856 1.27120 1.07219 0.91470 1.26717 1.05976 0.92026 0.92765 1.69711 1.40556 1.15244 1.14940 0.85277 0.75702 0.79775 0.79707 1.19127 1.18794 1.17391 1.16983 0.94585 1.25975 0.83776 1.26041 0.90980 0.90547 0.92723 1.80985 1.10455 1.16348 1.13566 1.20657 0.92507 0.95578 0.95548 1.24119 0.89791 1.00408 1.00632 1.76971 1.24107 1.25276 0.88127 0.87165 0.87030 0.87814 0.88675 0.85034 0.78156 0.85666 0.86364 0.88736 0.86518 0.79621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 14.32 67.78 0.97 -1.14 16 2 C -0.19 -3.06 9.69 25.64 0.25 -2.81 16 3 C 0.16 2.53 6.93 85.63 0.59 3.13 16 4 N -0.37 -9.29 3.65 -349.85 -1.28 -10.57 16 5 C 0.04 1.17 10.86 84.16 0.91 2.09 16 6 C -0.18 -5.75 6.07 -20.08 -0.12 -5.87 16 7 C -0.13 -4.98 5.88 -19.98 -0.12 -5.09 16 8 C -0.06 -2.24 9.44 22.17 0.21 -2.03 16 9 C -0.18 -7.86 8.62 22.44 0.19 -7.67 16 10 C 0.13 6.34 5.73 -19.86 -0.11 6.22 16 11 C -0.46 -23.22 8.55 23.29 0.20 -23.02 16 12 H 0.07 3.49 7.38 -2.91 -0.02 3.47 16 13 C 0.05 2.10 5.16 85.35 0.44 2.54 16 14 N -0.78 -35.29 10.96 21.88 0.24 -35.05 16 15 Si 0.98 35.02 29.59 68.60 2.03 37.05 16 16 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 17 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 18 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 19 C -0.21 -9.68 5.93 -19.63 -0.12 -9.80 16 20 C 0.31 14.84 14.29 88.33 1.26 16.11 16 21 N -0.53 -26.56 18.54 19.00 0.35 -26.21 16 22 C -0.02 -0.89 9.28 22.75 0.21 -0.68 16 23 C 0.04 1.13 11.40 85.58 0.98 2.10 16 24 N -0.32 -9.98 12.33 -56.36 -0.70 -10.67 16 25 H 0.11 1.23 7.84 -2.91 -0.02 1.21 16 26 H 0.11 1.27 8.06 -2.91 -0.02 1.25 16 27 H 0.10 1.89 8.06 -2.91 -0.02 1.87 16 28 H 0.10 1.36 7.79 -2.38 -0.02 1.34 16 29 H 0.13 1.33 8.06 -2.39 -0.02 1.31 16 30 H 0.20 3.89 7.25 -2.91 -0.02 3.87 16 31 H 0.13 3.84 6.92 -2.91 -0.02 3.82 16 32 H 0.12 5.35 6.20 -2.91 -0.02 5.33 16 33 H 0.30 11.96 8.29 -92.71 -0.77 11.19 16 34 H 0.12 4.23 6.98 -2.91 -0.02 4.21 16 35 H 0.19 5.27 7.30 -2.91 -0.02 5.25 16 Total: -1.00 -60.05 318.70 7.52 -52.53 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 1.12 Total: 18.85 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 5.75 Total: -25.92 kcal Atomic # 7 Polarization: -81.12 SS G_CDS: -1.38 Total: -82.51 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -60.05 7.52 -52.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222391521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.307 kcal (2) G-P(sol) polarization free energy of solvation -60.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds