Wall clock time and date at job start Tue Mar 31 2020 00:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47206 * 2 1 4 4 C 1.33640 * 122.75013 * 84.70506 * 3 2 1 5 5 S 1.76196 * 107.92386 * 179.97438 * 4 3 2 6 6 C 1.70977 * 90.28083 * 0.27390 * 5 4 3 7 7 C 1.50703 * 124.91409 * 179.84225 * 6 5 4 8 8 N 1.46900 * 109.47108 * 269.99970 * 7 6 5 9 9 C 1.46899 * 111.00043 * 189.99870 * 8 7 6 10 10 C 1.50709 * 109.47007 * 169.23051 * 9 8 7 11 11 H 1.08000 * 119.99773 * 354.98203 * 10 9 8 12 12 C 1.37876 * 119.99932 * 174.97441 * 10 9 8 13 13 N 1.31516 * 119.99706 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99972 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46970 * 90.00069 * 14 12 10 16 16 H 1.48502 * 109.46844 * 210.00463 * 14 12 10 17 17 H 1.48500 * 109.46864 * 330.00126 * 14 12 10 18 18 C 1.46900 * 110.99886 * 66.04616 * 8 7 6 19 19 C 1.52998 * 109.47209 * 62.07958 * 18 8 7 20 20 C 1.47198 * 109.47495 * 179.97438 * 19 18 8 21 21 N 8.57288 * 91.60341 * 3.47917 * 2 1 3 22 22 N 1.29028 * 110.17004 * 359.84275 * 6 5 4 23 23 H 1.09003 * 109.47022 * 59.99799 * 1 2 3 24 24 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47410 * 300.00543 * 1 2 3 26 26 H 1.09001 * 109.47522 * 239.99999 * 2 1 3 27 27 H 1.09003 * 109.47180 * 119.99431 * 2 1 3 28 28 H 1.08002 * 126.03828 * 0.04204 * 4 3 2 29 29 H 1.08998 * 109.47241 * 29.99850 * 7 6 5 30 30 H 1.09001 * 109.47306 * 150.00361 * 7 6 5 31 31 H 1.09000 * 109.47434 * 289.23283 * 9 8 7 32 32 H 1.09002 * 109.47136 * 49.23562 * 9 8 7 33 33 H 0.97001 * 119.99255 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.47297 * 182.07825 * 18 8 7 35 35 H 1.08997 * 109.47168 * 302.07812 * 18 8 7 36 36 H 1.08997 * 109.47403 * 299.94546 * 19 18 8 37 37 H 1.09003 * 109.46944 * 59.94413 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1756 2.1371 1.1192 5 16 2.7833 3.7288 0.6703 6 6 2.7767 3.2757 -0.9783 7 6 3.1964 4.1663 -2.1193 8 7 2.0315 4.9142 -2.6109 9 6 2.3443 5.6105 -3.8660 10 6 1.0729 6.1429 -4.4754 11 1 0.1195 5.9115 -4.0238 12 6 1.1269 6.9253 -5.6093 13 7 2.2879 7.2067 -6.1593 14 14 -0.4489 7.5858 -6.3642 15 1 -0.7672 8.9080 -5.7679 16 1 -0.2707 7.7342 -7.8310 17 1 -1.5615 6.6401 -6.0939 18 6 1.5430 5.8554 -1.5943 19 6 2.6346 6.8811 -1.2824 20 6 2.1450 7.8246 -0.2642 21 7 1.7698 8.5537 0.5200 22 7 2.3603 2.0610 -1.1042 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9583 1.7994 2.1218 29 1 3.9576 4.8656 -1.7734 30 1 3.6031 3.5562 -2.9258 31 1 3.0241 6.4379 -3.6628 32 1 2.8160 4.9146 -4.5597 33 1 2.3258 7.7569 -6.9573 34 1 0.6583 6.3694 -1.9702 35 1 1.2875 5.3092 -0.6863 36 1 3.5190 6.3673 -0.9056 37 1 2.8908 7.4266 -2.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232474889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:37 Heat of formation + Delta-G solvation = 69.281791 kcal Electronic energy + Delta-G solvation = -19119.973098 eV Core-core repulsion = 16217.260089 eV Total energy + Delta-G solvation = -2902.713009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.85506 -37.94354 -36.02985 -33.74219 -32.70082 -30.83777 -29.68963 -27.83714 -25.92547 -24.74497 -23.76964 -21.87032 -20.03386 -19.38836 -17.71083 -17.34289 -16.36191 -15.67378 -15.28513 -14.85526 -14.63038 -14.14974 -14.07273 -13.89853 -13.72900 -13.35752 -13.09028 -12.45038 -12.24218 -12.10830 -12.04537 -11.94143 -11.64215 -11.35524 -11.23534 -11.17471 -10.90691 -10.80249 -10.68307 -10.38087 -10.03477 -9.47438 -9.33621 -9.18602 -8.62256 -8.50832 -7.51951 -6.12018 -4.13536 0.82633 1.49014 1.86120 2.92121 3.05163 3.08620 3.28682 3.35954 3.40104 4.15140 4.25506 4.38888 4.84916 4.94973 5.02532 5.24202 5.25417 5.28125 5.28429 5.37096 5.49141 5.52862 5.61899 5.74855 5.78964 5.97269 6.07286 6.13736 6.15526 6.31741 6.50399 7.03676 7.11466 7.64991 7.78875 7.89132 7.96405 7.98019 8.34093 8.93854 9.51759 10.98231 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.005206 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.982590 B = 5377.561299 C = 6397.360966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.074 3.926 4 C -0.272 4.272 5 S 0.097 5.903 6 C 0.085 3.915 7 C 0.117 3.883 8 N -0.516 5.516 9 C 0.188 3.812 10 C -0.510 4.510 11 H 0.065 0.935 12 C 0.060 3.940 13 N -0.896 5.896 14 Si 0.895 3.105 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.273 1.273 18 C 0.063 3.937 19 C -0.075 4.075 20 C 0.225 3.775 21 N -0.456 5.456 22 N -0.458 5.458 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.171 0.829 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.008 0.992 32 H 0.035 0.965 33 H 0.262 0.738 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 -10.461 12.484 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 C -0.059 4.059 4 C -0.411 4.411 5 S 0.352 5.648 6 C -0.194 4.194 7 C -0.014 4.014 8 N -0.240 5.240 9 C 0.064 3.936 10 C -0.549 4.549 11 H 0.083 0.917 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.723 3.277 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.197 1.197 18 C -0.067 4.067 19 C -0.117 4.117 20 C -0.093 4.093 21 N -0.134 5.134 22 N -0.172 5.172 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.188 0.812 29 H 0.073 0.927 30 H 0.123 0.877 31 H 0.026 0.974 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.054 -8.930 13.395 16.230 hybrid contribution -0.313 -0.103 -0.584 0.671 sum 1.741 -9.033 12.811 15.772 Atomic orbital electron populations 1.21732 0.94318 1.01758 1.02556 1.20108 0.96181 0.89428 1.03126 1.20309 1.00432 0.98395 0.86722 1.26691 1.13526 0.97048 1.03829 1.84030 1.61087 1.14744 1.04896 1.27182 1.00625 0.94348 0.97290 1.20795 0.93138 0.94374 0.93117 1.62377 1.30083 1.26717 1.04809 1.19919 0.97270 0.92550 0.83885 1.21090 0.93007 1.30352 1.10413 0.91694 1.24932 0.96249 0.96197 0.96845 1.69933 1.23887 1.38249 1.21464 0.86536 0.83571 0.79255 0.78352 1.20719 1.21233 1.19727 1.22227 0.97484 0.91565 0.95463 1.20230 1.01133 0.95240 0.95130 1.29086 0.93098 0.93557 0.93561 1.81083 1.09610 1.10935 1.11756 1.66100 1.13384 1.07069 1.30649 0.91954 0.92179 0.92779 0.90036 0.90634 0.81188 0.92727 0.87692 0.97394 0.94708 0.92791 0.88343 0.91878 0.88677 0.85560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.07 16 2 C -0.05 -0.50 6.35 -27.88 -0.18 -0.68 16 3 C 0.07 0.98 5.99 -84.22 -0.50 0.48 16 4 C -0.27 -3.22 11.14 29.12 0.32 -2.90 16 5 S 0.10 1.22 21.61 -107.50 -2.32 -1.11 16 6 C 0.09 1.28 6.18 -13.45 -0.08 1.20 16 7 C 0.12 1.82 5.34 -4.97 -0.03 1.79 16 8 N -0.52 -9.57 4.69 -237.51 -1.11 -10.68 16 9 C 0.19 4.19 4.52 -4.97 -0.02 4.16 16 10 C -0.51 -12.97 8.39 -34.44 -0.29 -13.26 16 11 H 0.06 1.67 7.36 -52.49 -0.39 1.29 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -24.62 13.29 55.43 0.74 -23.88 16 14 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.06 1.05 4.86 -3.83 -0.02 1.03 16 19 C -0.08 -1.10 5.05 -29.52 -0.15 -1.25 16 20 C 0.22 3.57 15.43 -20.81 -0.32 3.25 16 21 N -0.46 -8.13 18.53 42.10 0.78 -7.35 16 22 N -0.46 -7.30 10.53 -8.05 -0.08 -7.39 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.05 0.72 6.07 -51.93 -0.32 0.41 16 30 H 0.10 1.67 7.92 -51.93 -0.41 1.26 16 31 H 0.01 0.19 6.02 -51.93 -0.31 -0.13 16 32 H 0.03 0.84 7.92 -51.93 -0.41 0.43 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.10 1.83 6.97 -51.93 -0.36 1.47 16 35 H 0.06 0.98 5.92 -51.93 -0.31 0.67 16 36 H 0.10 1.16 6.32 -51.93 -0.33 0.83 16 37 H 0.13 2.01 6.30 -51.93 -0.33 1.69 16 LS Contribution 325.97 15.07 4.91 4.91 Total: -1.00 -29.12 325.97 -7.94 -37.06 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -4.83 Total: -1.48 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.00 Total: -5.78 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: 0.32 Total: -49.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.32 Total: -1.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.12 -7.94 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232474889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.346 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds