Wall clock time and date at job start Tue Mar 31 2020 00:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50709 * 109.47206 * 2 1 4 4 C 1.33640 * 122.75013 * 84.70506 * 3 2 1 5 5 S 1.76196 * 107.92386 * 179.97438 * 4 3 2 6 6 C 1.70977 * 90.28083 * 0.27390 * 5 4 3 7 7 C 1.50703 * 124.91409 * 179.84225 * 6 5 4 8 8 N 1.46900 * 109.47108 * 269.99970 * 7 6 5 9 9 C 1.46899 * 111.00043 * 189.99870 * 8 7 6 10 10 C 1.50709 * 109.47007 * 169.23051 * 9 8 7 11 11 H 1.08000 * 119.99773 * 354.98203 * 10 9 8 12 12 C 1.37876 * 119.99932 * 174.97441 * 10 9 8 13 13 N 1.31516 * 119.99706 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99972 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46970 * 90.00069 * 14 12 10 16 16 H 1.48502 * 109.46844 * 210.00463 * 14 12 10 17 17 H 1.48500 * 109.46864 * 330.00126 * 14 12 10 18 18 C 1.46900 * 110.99886 * 66.04616 * 8 7 6 19 19 C 1.52998 * 109.47209 * 62.07958 * 18 8 7 20 20 C 1.47198 * 109.47495 * 179.97438 * 19 18 8 21 21 N 8.57288 * 91.60341 * 3.47917 * 2 1 3 22 22 N 1.29028 * 110.17004 * 359.84275 * 6 5 4 23 23 H 1.09003 * 109.47022 * 59.99799 * 1 2 3 24 24 H 1.08997 * 109.47322 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47410 * 300.00543 * 1 2 3 26 26 H 1.09001 * 109.47522 * 239.99999 * 2 1 3 27 27 H 1.09003 * 109.47180 * 119.99431 * 2 1 3 28 28 H 1.08002 * 126.03828 * 0.04204 * 4 3 2 29 29 H 1.08998 * 109.47241 * 29.99850 * 7 6 5 30 30 H 1.09001 * 109.47306 * 150.00361 * 7 6 5 31 31 H 1.09000 * 109.47434 * 289.23283 * 9 8 7 32 32 H 1.09002 * 109.47136 * 49.23562 * 9 8 7 33 33 H 0.97001 * 119.99255 * 179.97438 * 13 12 10 34 34 H 1.09000 * 109.47297 * 182.07825 * 18 8 7 35 35 H 1.08997 * 109.47168 * 302.07812 * 18 8 7 36 36 H 1.08997 * 109.47403 * 299.94546 * 19 18 8 37 37 H 1.09003 * 109.46944 * 59.94413 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.1756 2.1371 1.1192 5 16 2.7833 3.7288 0.6703 6 6 2.7767 3.2757 -0.9783 7 6 3.1964 4.1663 -2.1193 8 7 2.0315 4.9142 -2.6109 9 6 2.3443 5.6105 -3.8660 10 6 1.0729 6.1429 -4.4754 11 1 0.1195 5.9115 -4.0238 12 6 1.1269 6.9253 -5.6093 13 7 2.2879 7.2067 -6.1593 14 14 -0.4489 7.5858 -6.3642 15 1 -0.7672 8.9080 -5.7679 16 1 -0.2707 7.7342 -7.8310 17 1 -1.5615 6.6401 -6.0939 18 6 1.5430 5.8554 -1.5943 19 6 2.6346 6.8811 -1.2824 20 6 2.1450 7.8246 -0.2642 21 7 1.7698 8.5537 0.5200 22 7 2.3603 2.0610 -1.1042 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.9583 1.7994 2.1218 29 1 3.9576 4.8656 -1.7734 30 1 3.6031 3.5562 -2.9258 31 1 3.0241 6.4379 -3.6628 32 1 2.8160 4.9146 -4.5597 33 1 2.3258 7.7569 -6.9573 34 1 0.6583 6.3694 -1.9702 35 1 1.2875 5.3092 -0.6863 36 1 3.5190 6.3673 -0.9056 37 1 2.8908 7.4266 -2.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232474889.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:35 Heat of formation + Delta-G solvation = 51.315935 kcal Electronic energy + Delta-G solvation = -19120.752156 eV Core-core repulsion = 16217.260089 eV Total energy + Delta-G solvation = -2903.492067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.90820 -39.32832 -37.39919 -34.91970 -34.39566 -32.07732 -30.98352 -29.21054 -27.38977 -25.85883 -25.19106 -23.13466 -21.39100 -20.44550 -18.98543 -18.45871 -18.20196 -17.07814 -16.54599 -16.27354 -15.95514 -15.48484 -15.14636 -15.04300 -14.84330 -14.54869 -14.42101 -13.99628 -13.55576 -13.47202 -13.22709 -12.99723 -12.91218 -12.87713 -12.66389 -12.57008 -12.42064 -12.07888 -11.95950 -11.74772 -11.64158 -11.29628 -10.53621 -10.47245 -10.24956 -9.60689 -8.99518 -8.13517 -6.19781 -0.20028 0.48746 0.85035 1.43977 1.46666 1.55613 1.74600 1.78861 1.88341 2.45284 2.95773 3.12664 3.21362 3.48617 3.96401 4.06325 4.11374 4.20241 4.31795 4.39033 4.47956 4.50251 4.65344 4.68551 4.74180 4.81885 5.06425 5.10015 5.24137 5.27896 5.36065 5.36861 5.43974 5.72479 6.10876 6.26080 6.54785 6.59709 6.94633 6.95103 7.48779 8.95963 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.005206 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.982590 B = 5377.561299 C = 6397.360966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.051 3.949 4 C -0.260 4.260 5 S 0.132 5.868 6 C 0.056 3.944 7 C 0.120 3.880 8 N -0.530 5.530 9 C 0.202 3.798 10 C -0.517 4.517 11 H 0.057 0.943 12 C 0.014 3.986 13 N -0.925 5.925 14 Si 0.949 3.051 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.069 3.931 19 C -0.064 4.064 20 C 0.244 3.756 21 N -0.486 5.486 22 N -0.489 5.489 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.203 0.797 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.007 0.993 32 H 0.010 0.990 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.538 -11.127 14.479 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.081 4.081 4 C -0.398 4.398 5 S 0.387 5.613 6 C -0.222 4.222 7 C -0.011 4.011 8 N -0.253 5.253 9 C 0.077 3.923 10 C -0.555 4.555 11 H 0.075 0.925 12 C -0.184 4.184 13 N -0.566 5.566 14 Si 0.776 3.224 15 H -0.203 1.203 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.062 4.062 19 C -0.105 4.105 20 C -0.073 4.073 21 N -0.164 5.164 22 N -0.204 5.204 23 H 0.053 0.947 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.122 0.878 28 H 0.220 0.780 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.025 0.975 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.144 0.856 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.938 -9.603 15.403 18.254 hybrid contribution -0.280 0.016 -1.117 1.151 sum 1.658 -9.587 14.286 17.284 Atomic orbital electron populations 1.21704 0.94055 1.02763 1.01431 1.20210 0.96310 0.88083 1.04095 1.20727 1.01154 0.99689 0.86498 1.27131 1.11525 0.96286 1.04905 1.83818 1.60232 1.14891 1.02373 1.26949 1.02267 0.94467 0.98527 1.20739 0.92459 0.94463 0.93444 1.62157 1.31988 1.26890 1.04284 1.19555 0.95616 0.91921 0.85212 1.21393 0.93885 1.29867 1.10393 0.92508 1.25595 0.98655 0.96734 0.97454 1.70021 1.25426 1.39177 1.21964 0.85679 0.80515 0.78679 0.77534 1.20274 1.21100 1.19657 1.22104 0.97148 0.91693 0.95214 1.20146 1.01429 0.94487 0.94466 1.29131 0.92197 0.92984 0.92984 1.81107 1.10566 1.11806 1.12927 1.66094 1.13830 1.07856 1.32665 0.94750 0.90155 0.92120 0.90957 0.87762 0.77993 0.90227 0.88946 0.97535 0.97179 0.92825 0.90688 0.90459 0.85597 0.86646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.89 71.98 0.71 -1.84 16 2 C -0.05 -0.89 6.35 29.85 0.19 -0.70 16 3 C 0.05 1.27 5.99 41.53 0.25 1.51 16 4 C -0.26 -5.35 11.14 66.78 0.74 -4.60 16 5 S 0.13 2.96 21.61 -56.49 -1.22 1.73 16 6 C 0.06 1.63 6.18 88.52 0.55 2.18 16 7 C 0.12 3.66 5.34 85.56 0.46 4.11 16 8 N -0.53 -19.66 4.69 -905.35 -4.24 -23.90 16 9 C 0.20 9.18 4.52 85.56 0.39 9.56 16 10 C -0.52 -26.67 8.39 25.60 0.21 -26.45 16 11 H 0.06 2.97 7.36 -2.91 -0.02 2.95 16 12 C 0.01 0.77 5.46 84.65 0.46 1.23 16 13 N -0.93 -51.42 13.29 21.45 0.28 -51.13 16 14 Si 0.95 42.70 29.54 68.60 2.03 44.73 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 16 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C 0.07 2.24 4.86 86.30 0.42 2.66 16 19 C -0.06 -1.76 5.05 28.79 0.15 -1.62 16 20 C 0.24 7.39 15.43 89.46 1.38 8.77 16 21 N -0.49 -16.69 18.53 19.99 0.37 -16.32 16 22 N -0.49 -15.27 10.53 -179.39 -1.89 -17.15 16 23 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.20 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.08 1.98 6.07 -2.39 -0.01 1.96 16 30 H 0.09 3.01 7.92 -2.39 -0.02 2.99 16 31 H 0.01 0.32 6.02 -2.39 -0.01 0.30 16 32 H 0.01 0.51 7.92 -2.39 -0.02 0.49 16 33 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 34 H 0.07 2.79 6.97 -2.39 -0.02 2.78 16 35 H 0.08 2.29 5.92 -2.39 -0.01 2.28 16 36 H 0.13 2.73 6.32 -2.39 -0.02 2.71 16 37 H 0.12 3.59 6.30 -2.39 -0.02 3.58 16 Total: -1.00 -62.82 325.97 2.32 -60.50 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.08 Total: 6.73 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.91 Total: -5.19 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -5.48 Total: -108.51 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.22 Total: 1.73 kcal Total: -62.82 2.32 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232474889.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.818 kcal (2) G-P(sol) polarization free energy of solvation -62.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds