Wall clock time and date at job start Tue Mar 31 2020 00:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38241 * 120.00229 * 99.72212 * 3 2 1 5 5 C 1.38213 * 120.01066 * 179.76766 * 4 3 2 6 6 C 1.50708 * 119.98764 * 180.27909 * 5 4 3 7 7 N 1.46896 * 109.46972 * 270.23554 * 6 5 4 8 8 C 1.47481 * 110.99842 * 265.97073 * 7 6 5 9 9 C 1.53515 * 87.93197 * 221.30032 * 8 7 6 10 10 C 1.50701 * 114.34778 * 139.68714 * 9 8 7 11 11 H 1.08007 * 119.99562 * 266.07735 * 10 9 8 12 12 C 1.37876 * 120.00297 * 86.06988 * 10 9 8 13 13 N 1.31510 * 119.99730 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99779 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46882 * 89.99927 * 14 12 10 16 16 H 1.48502 * 109.46973 * 209.99726 * 14 12 10 17 17 H 1.48498 * 109.47544 * 329.99882 * 14 12 10 18 18 C 1.47483 * 110.99926 * 170.00132 * 7 6 5 19 19 C 1.38261 * 120.02862 * 0.51279 * 5 4 3 20 20 C 1.38199 * 120.01228 * 359.74759 * 19 5 4 21 21 C 1.38330 * 120.00887 * 280.00573 * 3 2 1 22 22 Cl 1.73599 * 120.01295 * 359.95069 * 21 3 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.08002 * 119.99297 * 0.02562 * 4 3 2 29 29 H 1.08995 * 109.46689 * 30.23378 * 6 5 4 30 30 H 1.09000 * 109.47049 * 150.23612 * 6 5 4 31 31 H 1.09000 * 113.47580 * 336.06331 * 8 7 6 32 32 H 1.08999 * 113.47872 * 106.53319 * 8 7 6 33 33 H 1.09003 * 114.17031 * 272.37817 * 9 8 7 34 34 H 0.97004 * 119.99652 * 180.02562 * 13 12 10 35 35 H 1.08996 * 113.47284 * 253.47036 * 18 7 6 36 36 H 1.08999 * 113.47325 * 23.93082 * 18 7 6 37 37 H 1.08004 * 120.00098 * 179.72034 * 19 5 4 38 38 H 1.07993 * 120.00535 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4534 2.0051 1.1800 5 6 2.9187 3.3066 1.1794 6 6 3.3835 3.9410 2.4650 7 7 2.2485 4.6017 3.1232 8 6 2.1824 6.0286 2.7564 9 6 1.8425 6.3324 4.2223 10 6 2.5145 7.5635 4.7736 11 1 3.4516 7.4757 5.3034 12 6 1.9332 8.8018 4.6017 13 7 2.5200 9.8761 5.0825 14 14 0.3122 8.9535 3.6860 15 1 -0.8128 8.8345 4.6481 16 1 0.2474 10.2740 3.0097 17 1 0.2131 7.8728 2.6724 18 6 2.6046 5.0270 4.4897 19 6 2.9534 4.0284 0.0006 20 6 2.5277 3.4471 -1.1787 21 6 2.0668 2.1424 -1.1796 22 17 1.5325 1.4113 -2.6607 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.4227 1.4431 2.1018 29 1 3.7884 3.1727 3.1235 30 1 4.1567 4.6779 2.2477 31 1 3.1405 6.4401 2.4386 32 1 1.3725 6.2623 2.0654 33 1 0.7783 6.2832 4.4531 34 1 2.1108 10.7473 4.9619 35 1 2.1525 4.4118 5.2676 36 1 3.6753 5.1711 4.6345 37 1 3.3128 5.0469 0.0015 38 1 2.5545 4.0112 -2.0992 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237735310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:18 Heat of formation + Delta-G solvation = 39.017852 kcal Electronic energy + Delta-G solvation = -19021.519811 eV Core-core repulsion = 16083.158002 eV Total energy + Delta-G solvation = -2938.361809 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93506 -38.85921 -36.53258 -34.47597 -32.85293 -31.88240 -29.74241 -28.71926 -25.76641 -25.09394 -24.03878 -22.82556 -21.80510 -20.12085 -18.68472 -17.10050 -16.83984 -16.08411 -15.35521 -15.23294 -14.55171 -14.24089 -13.94288 -13.73767 -13.60878 -13.37261 -13.09408 -12.68074 -12.48814 -12.06879 -11.98953 -11.77205 -11.51809 -11.42673 -11.19940 -11.06713 -10.91110 -10.65320 -10.37225 -9.99427 -9.95094 -9.63700 -9.17189 -8.86669 -8.60556 -8.48110 -8.20232 -6.13999 -4.14801 1.14083 1.28386 2.08337 3.27637 3.36352 3.41173 3.57549 4.39304 4.54149 4.65321 4.72830 4.98839 5.05964 5.15016 5.21891 5.22131 5.29513 5.38508 5.53751 5.63397 5.75089 5.79585 5.81567 5.87624 5.98992 6.06071 6.11237 6.21187 6.25021 6.35030 6.37244 6.46590 6.59303 6.71796 6.81065 6.94646 7.30986 7.64228 7.78645 8.44853 8.88820 9.49038 10.98438 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.003851 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.074054 B = 7268.572201 C = 7569.331987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 C -0.076 4.076 4 C -0.091 4.091 5 C -0.050 4.050 6 C 0.053 3.947 7 N -0.478 5.478 8 C -0.010 4.010 9 C 0.000 4.000 10 C -0.512 4.512 11 H 0.074 0.926 12 C 0.075 3.925 13 N -0.898 5.898 14 Si 0.875 3.125 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.257 1.257 18 C 0.009 3.991 19 C -0.104 4.104 20 C -0.108 4.108 21 C -0.041 4.041 22 Cl -0.079 7.079 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.129 0.871 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.265 0.735 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.129 0.871 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -17.914 -12.301 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.077 4.077 4 C -0.110 4.110 5 C -0.051 4.051 6 C -0.076 4.076 7 N -0.200 5.200 8 C -0.139 4.139 9 C -0.019 4.019 10 C -0.550 4.550 11 H 0.092 0.908 12 C -0.128 4.128 13 N -0.536 5.536 14 Si 0.702 3.298 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.181 1.181 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.067 4.067 22 Cl -0.051 7.051 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.200 -18.249 -12.542 22.176 hybrid contribution -0.078 0.749 -0.605 0.966 sum -1.278 -17.500 -13.147 21.926 Atomic orbital electron populations 1.21742 0.94413 1.01721 1.02629 1.20549 0.96606 0.92006 1.03021 1.19710 0.99629 0.96654 0.91661 1.20858 0.98467 0.94885 0.96787 1.19928 0.96685 0.93580 0.94879 1.21669 0.94054 0.98979 0.92859 1.68918 1.32880 1.13677 1.04515 1.24452 1.00684 0.87012 1.01762 1.20500 0.96519 0.93513 0.91364 1.20914 1.08596 0.89237 1.36270 0.90782 1.25006 0.97319 0.95716 0.94756 1.69909 1.39516 0.98659 1.45477 0.86882 0.84251 0.77758 0.80898 1.20249 1.21482 1.18145 1.23818 0.99680 0.97757 0.90740 1.21052 0.99786 0.99952 0.91500 1.20974 0.99395 0.93183 0.99102 1.20709 1.04687 0.94408 0.86925 1.98334 1.88991 1.83207 1.34521 0.92313 0.92297 0.92397 0.90808 0.90685 0.85294 0.90594 0.92687 0.91697 0.91875 0.92595 0.92559 0.91431 0.91962 0.85269 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.85 37.16 0.37 -1.03 16 2 C -0.08 -0.82 5.52 -27.88 -0.15 -0.98 16 3 C -0.08 -0.91 5.14 -104.59 -0.54 -1.45 16 4 C -0.09 -1.17 9.32 -39.59 -0.37 -1.54 16 5 C -0.05 -0.70 5.47 -104.62 -0.57 -1.28 16 6 C 0.05 0.80 4.94 -4.97 -0.02 0.77 16 7 N -0.48 -8.72 6.32 -246.08 -1.55 -10.28 16 8 C -0.01 -0.21 6.70 -7.54 -0.05 -0.26 16 9 C 0.00 0.01 2.95 -91.24 -0.27 -0.26 16 10 C -0.51 -13.87 9.38 -34.44 -0.32 -14.19 16 11 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 14 Si 0.88 21.02 27.14 -169.99 -4.61 16.40 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.26 -5.90 5.68 56.52 0.32 -5.58 16 18 C 0.01 0.16 7.25 -7.54 -0.05 0.11 16 19 C -0.10 -1.41 9.70 -39.59 -0.38 -1.79 16 20 C -0.11 -1.35 9.83 -39.55 -0.39 -1.74 16 21 C -0.04 -0.50 6.31 -39.50 -0.25 -0.75 16 22 Cl -0.08 -0.87 26.63 -51.86 -1.38 -2.25 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.59 7.26 -51.93 -0.38 0.22 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.63 8.01 -51.93 -0.42 0.21 16 27 H 0.07 0.69 7.35 -51.93 -0.38 0.31 16 28 H 0.13 1.48 8.04 -52.49 -0.42 1.06 16 29 H 0.08 1.04 8.02 -51.93 -0.42 0.62 16 30 H 0.05 0.84 7.24 -51.93 -0.38 0.46 16 31 H 0.06 1.34 7.38 -51.93 -0.38 0.96 16 32 H 0.06 1.32 7.11 -51.93 -0.37 0.96 16 33 H 0.06 1.31 7.04 -51.93 -0.37 0.94 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.19 7.87 -51.93 -0.41 0.78 16 37 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 323.99 15.07 4.88 4.88 Total: -1.00 -28.75 323.99 -10.67 -39.42 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.67 Total: 0.24 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -3.11 Total: -22.39 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.78 Total: -36.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.61 Total: 16.40 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.38 Total: -2.25 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.75 -10.67 -39.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237735310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.433 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds