Wall clock time and date at job start Tue Mar 31 2020 00:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.38241 * 120.00229 * 99.72212 * 3 2 1 5 5 C 1.38213 * 120.01066 * 179.76766 * 4 3 2 6 6 C 1.50708 * 119.98764 * 180.27909 * 5 4 3 7 7 N 1.46896 * 109.46972 * 270.23554 * 6 5 4 8 8 C 1.47481 * 110.99842 * 265.97073 * 7 6 5 9 9 C 1.53515 * 87.93197 * 221.30032 * 8 7 6 10 10 C 1.50701 * 114.34778 * 139.68714 * 9 8 7 11 11 H 1.08007 * 119.99562 * 266.07735 * 10 9 8 12 12 C 1.37876 * 120.00297 * 86.06988 * 10 9 8 13 13 N 1.31510 * 119.99730 * 180.02562 * 12 10 9 14 14 Si 1.86795 * 119.99779 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.46882 * 89.99927 * 14 12 10 16 16 H 1.48502 * 109.46973 * 209.99726 * 14 12 10 17 17 H 1.48498 * 109.47544 * 329.99882 * 14 12 10 18 18 C 1.47483 * 110.99926 * 170.00132 * 7 6 5 19 19 C 1.38261 * 120.02862 * 0.51279 * 5 4 3 20 20 C 1.38199 * 120.01228 * 359.74759 * 19 5 4 21 21 C 1.38330 * 120.00887 * 280.00573 * 3 2 1 22 22 Cl 1.73599 * 120.01295 * 359.95069 * 21 3 2 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.08002 * 119.99297 * 0.02562 * 4 3 2 29 29 H 1.08995 * 109.46689 * 30.23378 * 6 5 4 30 30 H 1.09000 * 109.47049 * 150.23612 * 6 5 4 31 31 H 1.09000 * 113.47580 * 336.06331 * 8 7 6 32 32 H 1.08999 * 113.47872 * 106.53319 * 8 7 6 33 33 H 1.09003 * 114.17031 * 272.37817 * 9 8 7 34 34 H 0.97004 * 119.99652 * 180.02562 * 13 12 10 35 35 H 1.08996 * 113.47284 * 253.47036 * 18 7 6 36 36 H 1.08999 * 113.47325 * 23.93082 * 18 7 6 37 37 H 1.08004 * 120.00098 * 179.72034 * 19 5 4 38 38 H 1.07993 * 120.00535 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4534 2.0051 1.1800 5 6 2.9187 3.3066 1.1794 6 6 3.3835 3.9410 2.4650 7 7 2.2485 4.6017 3.1232 8 6 2.1824 6.0286 2.7564 9 6 1.8425 6.3324 4.2223 10 6 2.5145 7.5635 4.7736 11 1 3.4516 7.4757 5.3034 12 6 1.9332 8.8018 4.6017 13 7 2.5200 9.8761 5.0825 14 14 0.3122 8.9535 3.6860 15 1 -0.8128 8.8345 4.6481 16 1 0.2474 10.2740 3.0097 17 1 0.2131 7.8728 2.6724 18 6 2.6046 5.0270 4.4897 19 6 2.9534 4.0284 0.0006 20 6 2.5277 3.4471 -1.1787 21 6 2.0668 2.1424 -1.1796 22 17 1.5325 1.4113 -2.6607 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.4227 1.4431 2.1018 29 1 3.7884 3.1727 3.1235 30 1 4.1567 4.6779 2.2477 31 1 3.1405 6.4401 2.4386 32 1 1.3725 6.2623 2.0654 33 1 0.7783 6.2832 4.4531 34 1 2.1108 10.7473 4.9619 35 1 2.1525 4.4118 5.2676 36 1 3.6753 5.1711 4.6345 37 1 3.3128 5.0469 0.0015 38 1 2.5545 4.0112 -2.0992 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237735310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:15 Heat of formation + Delta-G solvation = 22.685003 kcal Electronic energy + Delta-G solvation = -19022.228056 eV Core-core repulsion = 16083.158002 eV Total energy + Delta-G solvation = -2939.070054 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.57 seconds Orbital eigenvalues (eV) -41.15975 -40.15176 -37.45031 -35.41377 -34.70521 -33.21708 -30.79276 -30.07444 -27.36019 -26.68821 -24.89495 -24.25093 -22.89619 -21.15921 -20.41302 -19.08297 -17.81832 -17.08356 -16.86496 -16.53242 -16.01660 -15.49034 -15.28986 -14.91338 -14.62570 -14.56961 -14.33510 -14.29520 -13.50727 -13.38930 -13.25769 -12.98335 -12.82607 -12.55835 -12.42633 -12.31738 -11.97237 -11.82745 -11.79013 -11.60825 -11.47481 -11.37744 -11.08699 -10.64915 -9.81631 -9.79430 -9.45565 -8.29427 -6.34199 0.14933 0.32958 1.16566 1.37619 1.40409 1.52340 2.37409 2.57114 3.04344 3.36256 3.63364 3.77449 3.87130 4.04885 4.18098 4.23424 4.31600 4.35938 4.46493 4.50289 4.57524 4.62146 4.68753 4.76524 4.84840 4.91094 5.01121 5.04158 5.06217 5.06865 5.23047 5.33036 5.38234 5.46813 5.48799 5.63475 5.65872 5.85104 6.24886 6.29923 6.71854 7.33023 8.86581 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.026407 B = 0.003851 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.074054 B = 7268.572201 C = 7569.331987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.077 4.077 4 C -0.094 4.094 5 C -0.066 4.066 6 C 0.055 3.945 7 N -0.471 5.471 8 C 0.002 3.998 9 C -0.016 4.016 10 C -0.513 4.513 11 H 0.036 0.964 12 C 0.018 3.982 13 N -0.948 5.948 14 Si 0.939 3.061 15 H -0.271 1.271 16 H -0.289 1.289 17 H -0.239 1.239 18 C 0.018 3.982 19 C -0.116 4.116 20 C -0.112 4.112 21 C -0.048 4.048 22 Cl -0.068 7.068 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.266 0.734 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -20.152 -13.678 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.078 4.078 4 C -0.113 4.113 5 C -0.066 4.066 6 C -0.073 4.073 7 N -0.193 5.193 8 C -0.128 4.128 9 C -0.036 4.036 10 C -0.551 4.551 11 H 0.055 0.945 12 C -0.180 4.180 13 N -0.588 5.588 14 Si 0.763 3.237 15 H -0.196 1.196 16 H -0.215 1.215 17 H -0.162 1.162 18 C -0.111 4.111 19 C -0.135 4.135 20 C -0.130 4.130 21 C -0.075 4.075 22 Cl -0.039 7.039 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.078 0.922 37 H 0.146 0.854 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.315 -20.518 -13.927 24.906 hybrid contribution 0.344 1.364 -0.182 1.419 sum -1.970 -19.153 -14.109 23.870 Atomic orbital electron populations 1.21726 0.94161 1.02664 1.01760 1.20613 0.96702 0.90705 1.04060 1.19981 0.98883 0.97702 0.91239 1.21026 0.98088 0.94504 0.97680 1.19882 0.98047 0.94336 0.94359 1.21675 0.92827 0.99122 0.93686 1.68865 1.34545 1.12074 1.03774 1.24189 1.00286 0.88638 0.99664 1.20508 0.96486 0.93276 0.93312 1.21152 1.07354 0.91212 1.35389 0.94548 1.25851 1.01026 0.95300 0.95815 1.70051 1.41622 0.99353 1.47742 0.85857 0.79702 0.78100 0.80028 1.19641 1.21483 1.16187 1.23690 0.99187 0.96076 0.92104 1.21140 1.00320 1.00116 0.91919 1.21149 0.99040 0.93515 0.99346 1.20889 1.04381 0.94519 0.87663 1.98338 1.88812 1.82965 1.33762 0.93132 0.93166 0.90611 0.89351 0.90102 0.84001 0.88790 0.93027 0.92283 0.91951 0.92611 0.92494 0.89715 0.92162 0.85365 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.85 71.98 0.71 -1.68 16 2 C -0.08 -1.39 5.52 29.85 0.16 -1.23 16 3 C -0.08 -1.67 5.14 -19.84 -0.10 -1.77 16 4 C -0.09 -2.19 9.32 22.26 0.21 -1.98 16 5 C -0.07 -1.73 5.47 -19.86 -0.11 -1.83 16 6 C 0.05 1.56 4.94 85.56 0.42 1.98 16 7 N -0.47 -16.27 6.32 -932.46 -5.89 -22.16 16 8 C 0.00 0.06 6.70 83.58 0.56 0.62 16 9 C -0.02 -0.74 2.95 -11.20 -0.03 -0.77 16 10 C -0.51 -28.30 9.38 25.60 0.24 -28.06 16 11 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 12 C 0.02 1.01 5.47 84.65 0.46 1.47 16 13 N -0.95 -58.10 13.96 21.45 0.30 -57.80 16 14 Si 0.94 43.32 27.14 68.60 1.86 45.18 16 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 17 H -0.24 -10.19 5.68 99.48 0.56 -9.62 16 18 C 0.02 0.67 7.25 83.57 0.61 1.28 16 19 C -0.12 -2.98 9.70 22.27 0.22 -2.76 16 20 C -0.11 -2.60 9.83 22.29 0.22 -2.38 16 21 C -0.05 -1.08 6.31 22.32 0.14 -0.94 16 22 Cl -0.07 -1.34 26.63 -2.72 -0.07 -1.41 16 23 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.05 0.90 7.26 -2.39 -0.02 0.88 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.09 1.22 8.01 -2.39 -0.02 1.20 16 27 H 0.08 1.26 7.35 -2.39 -0.02 1.25 16 28 H 0.14 2.85 8.04 -2.91 -0.02 2.83 16 29 H 0.09 2.33 8.02 -2.39 -0.02 2.31 16 30 H 0.05 1.51 7.24 -2.39 -0.02 1.49 16 31 H 0.06 2.41 7.38 -2.39 -0.02 2.39 16 32 H 0.06 2.49 7.11 -2.39 -0.02 2.48 16 33 H 0.06 2.52 7.04 -2.39 -0.02 2.50 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.06 2.26 7.87 -2.39 -0.02 2.24 16 37 H 0.13 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -61.71 323.99 0.80 -60.91 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.90 Total: 13.35 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.70 Total: -38.06 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -5.59 Total: -79.97 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.86 Total: 45.18 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -61.71 0.80 -60.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237735310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.598 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.57 seconds