Wall clock time and date at job start Tue Mar 31 2020 01:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35775 * 124.81350 * 2 1 4 4 C 1.36543 * 109.69275 * 180.15511 * 3 2 1 5 5 C 1.47164 * 126.75591 * 179.88467 * 4 3 2 6 6 N 1.33214 * 120.56512 * 131.62010 * 5 4 3 7 7 C 1.31874 * 120.01303 * 179.69404 * 6 5 4 8 8 C 1.39028 * 121.24955 * 0.57240 * 7 6 5 9 9 N 1.31529 * 121.18449 * 359.42380 * 8 7 6 10 10 C 1.34108 * 119.86959 * 0.27500 * 9 8 7 11 11 C 1.40568 * 120.59011 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99861 * 172.16778 * 11 10 9 13 13 C 1.40074 * 120.00253 * 352.16825 * 11 10 9 14 14 N 1.30745 * 120.00347 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00075 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47162 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46898 * 120.00246 * 15 13 11 18 18 H 1.48495 * 109.47179 * 240.00137 * 15 13 11 19 19 C 1.47356 * 106.49009 * 359.62733 * 4 3 2 20 20 C 1.39316 * 133.95685 * 180.22671 * 19 4 3 21 21 C 1.37773 * 119.67328 * 179.97438 * 20 19 4 22 22 C 1.38736 * 120.30409 * 0.08375 * 21 20 19 23 23 C 1.37820 * 120.63585 * 359.93697 * 22 21 20 24 24 C 1.37984 * 124.81797 * 179.73081 * 2 1 3 25 25 H 1.09001 * 109.46637 * 270.26630 * 1 2 3 26 26 H 1.08998 * 109.47028 * 30.26589 * 1 2 3 27 27 H 1.09001 * 109.46619 * 150.26663 * 1 2 3 28 28 H 1.08000 * 125.15046 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.37228 * 180.29353 * 7 6 5 30 30 H 1.07999 * 119.41131 * 179.70162 * 8 7 6 31 31 H 0.96994 * 120.00805 * 179.97438 * 14 13 11 32 32 H 1.08006 * 120.16450 * 359.97438 * 20 19 4 33 33 H 1.08008 * 119.84908 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.68117 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.02695 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2402 1.1147 0.0000 4 6 3.5584 0.7586 -0.0035 5 6 4.7161 1.6671 -0.0070 6 7 5.7217 1.4863 0.8478 7 6 6.7566 2.3034 0.8311 8 6 6.8199 3.3690 -0.0596 9 7 5.8542 3.5922 -0.9243 10 6 4.7826 2.7863 -0.9515 11 6 3.7416 3.0112 -1.8688 12 1 2.9458 2.2880 -1.9704 13 6 3.7362 4.1730 -2.6513 14 7 4.6998 5.0481 -2.5288 15 14 2.3531 4.4713 -3.8709 16 1 1.3939 3.3389 -3.8184 17 1 1.6496 5.7320 -3.5228 18 1 2.9160 4.5807 -5.2407 19 6 3.5936 -0.7146 0.0034 20 6 4.6193 -1.6573 0.0078 21 6 4.3115 -3.0002 0.0145 22 6 2.9875 -3.4149 0.0152 23 6 1.9629 -2.4932 0.0104 24 6 2.2529 -1.1328 0.0053 25 1 -0.3632 0.0048 1.0277 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3632 -0.8924 -0.5097 28 1 1.8702 2.1294 0.0004 29 1 7.5684 2.1444 1.5255 30 1 7.6795 4.0227 -0.0443 31 1 4.6964 5.8525 -3.0709 32 1 5.6508 -1.3371 0.0059 33 1 5.1044 -3.7335 0.0184 34 1 2.7576 -4.4701 0.0201 35 1 0.9358 -2.8269 0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239524969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:53 Heat of formation + Delta-G solvation = 101.157948 kcal Electronic energy + Delta-G solvation = -20704.786258 eV Core-core repulsion = 17668.011552 eV Total energy + Delta-G solvation = -3036.774706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73386 -38.45849 -36.55351 -34.11340 -33.04262 -31.68523 -30.03375 -29.84263 -28.12186 -26.46018 -25.52534 -22.62177 -22.16611 -21.77835 -20.71441 -19.16732 -17.62343 -16.62232 -16.18359 -15.63474 -15.05652 -14.95642 -14.74047 -14.40293 -14.00811 -13.48124 -13.40392 -12.85488 -12.65201 -12.49444 -12.34871 -11.99812 -11.57187 -11.48381 -11.44505 -11.13410 -10.94660 -10.68384 -10.39868 -10.26895 -9.88395 -9.50483 -9.25834 -8.92934 -7.80878 -7.67287 -7.42398 -6.83612 -6.49505 -4.67966 1.61134 2.06805 2.38963 2.83440 2.95661 2.99909 3.14696 3.26015 3.57201 3.76089 4.42920 4.60723 4.97289 5.11358 5.32979 5.37158 5.46229 5.50454 5.56567 5.70879 5.75820 5.94992 6.05112 6.15571 6.21083 6.30621 6.40304 6.57342 6.64937 6.86500 6.90766 6.99475 7.04466 7.18499 7.35865 7.42677 7.69380 7.80410 7.83215 8.02488 8.36575 8.66320 9.31288 9.86177 10.04158 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.007038 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.065451 B = 3977.510423 C = 5282.997065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.487 5.487 3 C 0.049 3.951 4 C -0.057 4.057 5 C 0.013 3.987 6 N -0.413 5.413 7 C -0.127 4.127 8 C 0.085 3.915 9 N -0.463 5.463 10 C 0.224 3.776 11 C -0.399 4.399 12 H 0.096 0.904 13 C 0.065 3.935 14 N -0.704 5.704 15 Si 0.909 3.091 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.083 4.083 20 C -0.052 4.052 21 C -0.163 4.163 22 C -0.109 4.109 23 C -0.138 4.138 24 C 0.090 3.910 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.172 0.828 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.278 0.722 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -7.514 1.368 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.171 5.171 3 C -0.076 4.076 4 C -0.065 4.065 5 C -0.138 4.138 6 N -0.125 5.125 7 C -0.286 4.286 8 C -0.084 4.084 9 N -0.180 5.180 10 C 0.097 3.903 11 C -0.429 4.429 12 H 0.114 0.886 13 C -0.163 4.163 14 N -0.324 5.324 15 Si 0.732 3.268 16 H -0.181 1.181 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.089 4.089 20 C -0.071 4.071 21 C -0.182 4.182 22 C -0.128 4.128 23 C -0.159 4.159 24 C -0.016 4.016 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.189 0.811 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.697 -7.188 1.292 10.611 hybrid contribution -0.453 0.333 -0.513 0.761 sum -8.150 -6.855 0.779 10.678 Atomic orbital electron populations 1.21839 0.77947 1.03749 1.02369 1.43413 1.05397 1.04353 1.63907 1.21927 0.89837 0.90561 1.05322 1.18303 0.90709 0.89279 1.08180 1.20540 0.94662 0.99078 0.99488 1.67814 0.99862 1.25412 1.19388 1.22364 0.99692 0.99734 1.06800 1.23344 0.97389 0.95103 0.92528 1.69564 1.00683 1.26969 1.20741 1.20389 0.91560 0.87502 0.90834 1.19665 1.05901 1.03164 1.14185 0.88599 1.26211 0.96875 0.95719 0.97473 1.70089 1.26726 1.06007 1.29612 0.86224 0.80965 0.79472 0.80093 1.18073 1.19525 1.19453 1.19173 0.91687 0.93212 1.04817 1.20540 0.98510 0.91588 0.96415 1.20772 0.96050 0.95259 1.06150 1.20618 0.92425 0.98111 1.01622 1.19841 0.98829 0.89274 1.07928 1.18225 0.90269 0.88032 1.05047 0.91850 0.90052 0.90660 0.81118 0.85927 0.85699 0.91051 0.86218 0.86696 0.86591 0.87179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.99 59.85 0.66 1.60 16 2 N -0.49 -8.20 3.15 -121.44 -0.38 -8.58 16 3 C 0.05 0.96 9.32 -16.42 -0.15 0.81 16 4 C -0.06 -1.29 5.51 -103.18 -0.57 -1.86 16 5 C 0.01 0.33 6.87 -80.27 -0.55 -0.22 16 6 N -0.41 -10.45 10.46 -7.91 -0.08 -10.53 16 7 C -0.13 -3.00 11.17 -17.24 -0.19 -3.19 16 8 C 0.09 2.06 11.17 -17.39 -0.19 1.87 16 9 N -0.46 -12.60 8.11 -9.54 -0.08 -12.68 16 10 C 0.22 6.01 6.69 -82.62 -0.55 5.46 16 11 C -0.40 -10.07 8.35 -38.02 -0.32 -10.39 16 12 H 0.10 2.29 5.83 -52.48 -0.31 1.98 16 13 C 0.06 1.55 5.49 -17.33 -0.10 1.45 16 14 N -0.70 -17.81 11.53 55.55 0.64 -17.17 16 15 Si 0.91 17.43 29.56 -169.99 -5.02 12.41 16 16 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 17 H -0.27 -5.05 7.11 56.52 0.40 -4.64 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 C -0.08 -1.75 6.36 -104.96 -0.67 -2.42 16 20 C -0.05 -1.01 10.09 -39.35 -0.40 -1.40 16 21 C -0.16 -2.60 10.03 -39.57 -0.40 -3.00 16 22 C -0.11 -1.57 10.01 -39.55 -0.40 -1.97 16 23 C -0.14 -2.10 9.91 -39.42 -0.39 -2.49 16 24 C 0.09 1.63 6.79 -83.95 -0.57 1.06 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 27 H 0.07 0.73 8.03 -51.93 -0.42 0.31 16 28 H 0.17 3.11 7.80 -52.49 -0.41 2.70 16 29 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 30 H 0.13 2.61 8.06 -52.49 -0.42 2.18 16 31 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 32 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 33 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.11 1.35 8.01 -52.49 -0.42 0.93 16 LS Contribution 307.41 15.07 4.63 4.63 Total: -1.00 -30.98 307.41 -8.73 -39.70 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -3.65 Total: 6.91 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -4.78 Total: -14.70 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.10 Total: -48.96 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.02 Total: 12.41 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.98 -8.73 -39.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239524969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.859 kcal (2) G-P(sol) polarization free energy of solvation -30.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds