Wall clock time and date at job start Tue Mar 31 2020 01:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35775 * 124.81350 * 2 1 4 4 C 1.36543 * 109.69275 * 180.15511 * 3 2 1 5 5 C 1.47164 * 126.75591 * 179.88467 * 4 3 2 6 6 N 1.33214 * 120.56512 * 131.62010 * 5 4 3 7 7 C 1.31874 * 120.01303 * 179.69404 * 6 5 4 8 8 C 1.39028 * 121.24955 * 0.57240 * 7 6 5 9 9 N 1.31529 * 121.18449 * 359.42380 * 8 7 6 10 10 C 1.34108 * 119.86959 * 0.27500 * 9 8 7 11 11 C 1.40568 * 120.59011 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99861 * 172.16778 * 11 10 9 13 13 C 1.40074 * 120.00253 * 352.16825 * 11 10 9 14 14 N 1.30745 * 120.00347 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00075 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47162 * 0.02562 * 15 13 11 17 17 H 1.48505 * 109.46898 * 120.00246 * 15 13 11 18 18 H 1.48495 * 109.47179 * 240.00137 * 15 13 11 19 19 C 1.47356 * 106.49009 * 359.62733 * 4 3 2 20 20 C 1.39316 * 133.95685 * 180.22671 * 19 4 3 21 21 C 1.37773 * 119.67328 * 179.97438 * 20 19 4 22 22 C 1.38736 * 120.30409 * 0.08375 * 21 20 19 23 23 C 1.37820 * 120.63585 * 359.93697 * 22 21 20 24 24 C 1.37984 * 124.81797 * 179.73081 * 2 1 3 25 25 H 1.09001 * 109.46637 * 270.26630 * 1 2 3 26 26 H 1.08998 * 109.47028 * 30.26589 * 1 2 3 27 27 H 1.09001 * 109.46619 * 150.26663 * 1 2 3 28 28 H 1.08000 * 125.15046 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.37228 * 180.29353 * 7 6 5 30 30 H 1.07999 * 119.41131 * 179.70162 * 8 7 6 31 31 H 0.96994 * 120.00805 * 179.97438 * 14 13 11 32 32 H 1.08006 * 120.16450 * 359.97438 * 20 19 4 33 33 H 1.08008 * 119.84908 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.68117 * 179.97438 * 22 21 20 35 35 H 1.07997 * 120.02695 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2402 1.1147 0.0000 4 6 3.5584 0.7586 -0.0035 5 6 4.7161 1.6671 -0.0070 6 7 5.7217 1.4863 0.8478 7 6 6.7566 2.3034 0.8311 8 6 6.8199 3.3690 -0.0596 9 7 5.8542 3.5922 -0.9243 10 6 4.7826 2.7863 -0.9515 11 6 3.7416 3.0112 -1.8688 12 1 2.9458 2.2880 -1.9704 13 6 3.7362 4.1730 -2.6513 14 7 4.6998 5.0481 -2.5288 15 14 2.3531 4.4713 -3.8709 16 1 1.3939 3.3389 -3.8184 17 1 1.6496 5.7320 -3.5228 18 1 2.9160 4.5807 -5.2407 19 6 3.5936 -0.7146 0.0034 20 6 4.6193 -1.6573 0.0078 21 6 4.3115 -3.0002 0.0145 22 6 2.9875 -3.4149 0.0152 23 6 1.9629 -2.4932 0.0104 24 6 2.2529 -1.1328 0.0053 25 1 -0.3632 0.0048 1.0277 26 1 -0.3633 0.8876 -0.5180 27 1 -0.3632 -0.8924 -0.5097 28 1 1.8702 2.1294 0.0004 29 1 7.5684 2.1444 1.5255 30 1 7.6795 4.0227 -0.0443 31 1 4.6964 5.8525 -3.0709 32 1 5.6508 -1.3371 0.0059 33 1 5.1044 -3.7335 0.0184 34 1 2.7576 -4.4701 0.0201 35 1 0.9358 -2.8269 0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239524969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:52 Heat of formation + Delta-G solvation = 83.343621 kcal Electronic energy + Delta-G solvation = -20705.558745 eV Core-core repulsion = 17668.011552 eV Total energy + Delta-G solvation = -3037.547193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.09369 -40.32141 -37.82254 -35.95832 -34.58892 -33.44758 -31.70159 -31.06961 -29.51142 -28.19240 -26.95263 -24.29245 -23.77404 -23.37630 -22.04076 -20.66926 -19.49143 -18.00225 -17.87502 -17.06945 -16.70923 -16.29794 -16.07509 -16.00927 -15.58805 -14.84452 -14.71575 -14.58343 -14.33298 -13.63995 -13.52733 -13.35919 -13.21029 -13.09035 -12.99715 -12.52123 -12.43618 -12.06938 -11.90348 -11.72453 -11.65296 -11.43856 -11.02461 -10.44657 -9.59612 -9.29215 -9.00082 -8.47924 -8.17098 -6.57212 0.22115 0.57221 0.80995 1.10968 1.37889 1.52260 1.54607 1.96894 2.04386 2.15782 2.77320 3.09031 3.77477 3.85422 3.89234 4.08280 4.16691 4.23858 4.31243 4.38882 4.44450 4.54069 4.68322 4.72248 4.77694 4.85110 4.89898 5.06407 5.09056 5.13658 5.31532 5.36007 5.66542 5.77312 5.84308 5.96560 6.01330 6.14220 6.38342 6.50944 6.56389 6.77388 7.42321 7.96208 8.27315 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.007038 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.065451 B = 3977.510423 C = 5282.997065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.480 5.480 3 C 0.065 3.935 4 C -0.115 4.115 5 C 0.010 3.990 6 N -0.436 5.436 7 C -0.135 4.135 8 C 0.070 3.930 9 N -0.498 5.498 10 C 0.189 3.811 11 C -0.414 4.414 12 H 0.103 0.897 13 C 0.021 3.979 14 N -0.743 5.743 15 Si 0.989 3.011 16 H -0.247 1.247 17 H -0.259 1.259 18 H -0.267 1.267 19 C -0.119 4.119 20 C -0.090 4.090 21 C -0.152 4.152 22 C -0.102 4.102 23 C -0.127 4.127 24 C 0.078 3.922 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.177 0.823 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.287 0.713 32 H 0.092 0.908 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.651 -9.586 0.825 14.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.163 5.163 3 C -0.063 4.063 4 C -0.123 4.123 5 C -0.141 4.141 6 N -0.148 5.148 7 C -0.293 4.293 8 C -0.097 4.097 9 N -0.215 5.215 10 C 0.062 3.938 11 C -0.445 4.445 12 H 0.121 0.879 13 C -0.203 4.203 14 N -0.364 5.364 15 Si 0.808 3.192 16 H -0.170 1.170 17 H -0.183 1.183 18 H -0.192 1.192 19 C -0.124 4.124 20 C -0.109 4.109 21 C -0.171 4.171 22 C -0.121 4.121 23 C -0.148 4.148 24 C -0.028 4.028 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.194 0.806 29 H 0.168 0.832 30 H 0.170 0.830 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.158 0.842 34 H 0.179 0.821 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.846 -9.286 0.781 14.300 hybrid contribution 0.523 0.852 -0.273 1.036 sum -10.323 -8.435 0.508 13.340 Atomic orbital electron populations 1.22261 0.74406 1.05788 1.04254 1.43685 1.07303 1.03031 1.62251 1.21951 0.89404 0.91658 1.03332 1.18453 0.91102 0.90370 1.12389 1.21005 0.95466 0.99053 0.98550 1.67894 1.00651 1.26158 1.20072 1.22827 1.00128 0.99301 1.07080 1.23777 0.97782 0.95824 0.92337 1.69512 1.01655 1.28082 1.22240 1.20894 0.92330 0.88495 0.92080 1.19952 1.05883 1.04109 1.14537 0.87927 1.27196 0.99445 0.94717 0.98937 1.70172 1.28787 1.06713 1.30734 0.85050 0.77413 0.79884 0.76889 1.16977 1.18304 1.19226 1.19395 0.93857 0.92593 1.06556 1.20546 0.97207 0.93376 0.99776 1.21125 0.98083 0.94014 1.03913 1.21143 0.91206 1.00298 0.99488 1.20346 1.01146 0.87699 1.05595 1.18545 0.89236 0.89543 1.05491 0.89964 0.88626 0.88152 0.80552 0.83165 0.83020 0.90246 0.88972 0.84172 0.82125 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 10.99 127.77 1.40 2.79 16 2 N -0.48 -15.28 3.15 -538.13 -1.70 -16.97 16 3 C 0.07 2.57 9.32 83.69 0.78 3.34 16 4 C -0.11 -5.44 5.51 -18.93 -0.10 -5.54 16 5 C 0.01 0.54 6.87 43.46 0.30 0.84 16 6 N -0.44 -23.31 10.46 -178.94 -1.87 -25.19 16 7 C -0.14 -6.69 11.17 84.88 0.95 -5.75 16 8 C 0.07 3.55 11.17 84.93 0.95 4.50 16 9 N -0.50 -28.46 8.11 -184.11 -1.49 -29.95 16 10 C 0.19 10.68 6.69 41.55 0.28 10.95 16 11 C -0.41 -21.66 8.35 23.28 0.19 -21.47 16 12 H 0.10 5.03 5.83 -2.91 -0.02 5.01 16 13 C 0.02 1.01 5.49 85.30 0.47 1.48 16 14 N -0.74 -38.66 11.53 21.85 0.25 -38.41 16 15 Si 0.99 35.48 29.56 68.60 2.03 37.51 16 16 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 17 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 18 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 19 C -0.12 -5.10 6.36 -20.08 -0.13 -5.23 16 20 C -0.09 -3.61 10.09 22.42 0.23 -3.38 16 21 C -0.15 -4.60 10.03 22.28 0.22 -4.38 16 22 C -0.10 -2.54 10.01 22.29 0.22 -2.32 16 23 C -0.13 -3.36 9.91 22.38 0.22 -3.14 16 24 C 0.08 2.69 6.79 38.92 0.26 2.95 16 25 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.57 8.13 -2.39 -0.02 1.55 16 27 H 0.10 1.43 8.03 -2.39 -0.02 1.42 16 28 H 0.18 6.52 7.80 -2.91 -0.02 6.50 16 29 H 0.15 6.32 8.06 -2.91 -0.02 6.30 16 30 H 0.15 6.54 8.06 -2.91 -0.02 6.52 16 31 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 32 H 0.09 4.03 8.06 -2.91 -0.02 4.00 16 33 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.15 2.75 8.01 -2.91 -0.02 2.72 16 Total: -1.00 -72.59 307.41 4.58 -68.01 By element: Atomic # 1 Polarization: 28.23 SS G_CDS: 1.11 Total: 29.35 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 6.25 Total: -24.34 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.81 Total: -110.52 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 2.03 Total: 37.51 kcal Total: -72.59 4.58 -68.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239524969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.353 kcal (2) G-P(sol) polarization free energy of solvation -72.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds