Wall clock time and date at job start Tue Mar 31 2020 01:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.36195 * 124.88226 * 2 1 4 4 C 1.35835 * 109.75410 * 179.82085 * 3 2 1 5 5 C 1.47910 * 126.68656 * 180.17189 * 4 3 2 6 6 C 1.40278 * 120.00815 * 6.13828 * 5 4 3 7 7 N 1.32110 * 120.27543 * 179.97438 * 6 5 4 8 8 C 1.31933 * 120.31328 * 0.02562 * 7 6 5 9 9 C 1.40803 * 120.00988 * 359.97438 * 8 7 6 10 10 C 1.41273 * 120.13796 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99727 * 13.27028 * 10 9 8 12 12 C 1.40010 * 119.99874 * 193.27131 * 10 9 8 13 13 N 1.30751 * 120.00104 * 8.26170 * 12 10 9 14 14 Si 1.86806 * 119.99991 * 188.26867 * 12 10 9 15 15 H 1.48497 * 109.47334 * 89.99535 * 14 12 10 16 16 H 1.48497 * 109.47072 * 210.00053 * 14 12 10 17 17 H 1.48498 * 109.46614 * 329.99729 * 14 12 10 18 18 N 1.32673 * 120.00768 * 185.86736 * 5 4 3 19 19 C 1.47226 * 106.62489 * 0.42923 * 4 3 2 20 20 C 1.39380 * 133.99876 * 179.73872 * 19 4 3 21 21 C 1.36720 * 119.78929 * 179.97438 * 20 19 4 22 22 C 1.38769 * 120.46661 * 0.02562 * 21 20 19 23 23 C 1.37784 * 120.64258 * 359.96892 * 22 21 20 24 24 C 1.37851 * 124.88913 * 180.30860 * 2 1 3 25 25 H 1.09003 * 109.47569 * 269.69328 * 1 2 3 26 26 H 1.09000 * 109.47462 * 149.69699 * 1 2 3 27 27 H 1.08997 * 109.47664 * 29.69432 * 1 2 3 28 28 H 1.07995 * 125.12107 * 359.97164 * 3 2 1 29 29 H 1.07998 * 119.86433 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.99901 * 179.97438 * 8 7 6 31 31 H 0.97001 * 119.99790 * 179.97438 * 13 12 10 32 32 H 1.08000 * 120.10166 * 0.02656 * 20 19 4 33 33 H 1.07997 * 119.76650 * 180.02562 * 21 20 19 34 34 H 1.08007 * 119.67945 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.10784 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2438 1.1172 0.0000 4 6 3.5550 0.7628 0.0040 5 6 4.7176 1.6771 0.0089 6 6 4.5220 3.0600 0.1397 7 7 5.5566 3.8815 0.1452 8 6 6.7827 3.4089 0.0273 9 6 6.9936 2.0231 -0.1046 10 6 8.3055 1.5141 -0.2305 11 1 9.1533 2.1468 -0.0135 12 6 8.5063 0.1893 -0.6365 13 7 7.4952 -0.5271 -1.0538 14 14 10.2189 -0.5549 -0.5819 15 1 10.4412 -1.1886 0.7426 16 1 10.3475 -1.5797 -1.6489 17 1 11.2292 0.5121 -0.7959 18 7 5.9461 1.1892 -0.1050 19 6 3.5935 -0.7090 -0.0038 20 6 4.6211 -1.6506 -0.0089 21 6 4.3203 -2.9843 -0.0155 22 6 2.9987 -3.4075 -0.0177 23 6 1.9684 -2.4927 -0.0126 24 6 2.2534 -1.1307 -0.0061 25 1 -0.3634 -0.0055 1.0276 26 1 -0.3634 -0.8872 -0.5185 27 1 -0.3634 0.8927 -0.5090 28 1 1.8745 2.1321 -0.0004 29 1 3.5214 3.4548 0.2371 30 1 7.6248 4.0851 0.0321 31 1 7.6345 -1.4448 -1.3355 32 1 5.6517 -1.3277 -0.0068 33 1 5.1168 -3.7136 -0.0189 34 1 2.7755 -4.4642 -0.0233 35 1 0.9429 -2.8316 -0.0140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239525345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:57 Heat of formation + Delta-G solvation = 101.824485 kcal Electronic energy + Delta-G solvation = -20715.107003 eV Core-core repulsion = 17678.361200 eV Total energy + Delta-G solvation = -3036.745803 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83999 -38.71000 -36.57878 -34.03928 -33.21532 -31.59966 -30.11979 -29.80193 -28.36202 -26.33210 -25.50872 -22.72054 -22.43087 -21.67321 -20.66590 -19.26610 -17.39640 -16.65693 -16.01893 -15.49520 -15.20728 -15.08878 -14.84119 -14.71981 -13.84924 -13.40614 -13.27089 -13.04275 -12.63803 -12.50536 -12.35648 -12.10587 -11.52585 -11.38171 -11.30455 -11.05887 -10.91555 -10.70444 -10.34958 -10.20727 -9.80840 -9.61510 -9.44778 -8.74949 -7.93845 -7.70190 -7.35720 -6.75174 -6.58359 -4.65064 1.58564 2.08201 2.36745 2.85600 3.04771 3.07193 3.11384 3.20406 3.58750 3.86090 4.51122 4.71494 4.83656 5.08910 5.20732 5.28454 5.35161 5.44204 5.63286 5.64435 5.83618 5.90570 6.00339 6.14213 6.20435 6.35545 6.46593 6.66123 6.72368 6.91327 6.94126 7.13366 7.18192 7.20692 7.42533 7.50470 7.66917 7.70465 7.79567 8.08035 8.46031 8.67575 9.26251 9.84962 10.14185 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.006872 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.400007 B = 4073.372188 C = 5721.255908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.488 5.488 3 C 0.050 3.950 4 C -0.093 4.093 5 C 0.178 3.822 6 C -0.111 4.111 7 N -0.429 5.429 8 C -0.071 4.071 9 C 0.219 3.781 10 C -0.420 4.420 11 H 0.090 0.910 12 C 0.075 3.925 13 N -0.720 5.720 14 Si 0.911 3.089 15 H -0.267 1.267 16 H -0.276 1.276 17 H -0.261 1.261 18 N -0.448 5.448 19 C -0.077 4.077 20 C -0.039 4.039 21 C -0.170 4.170 22 C -0.101 4.101 23 C -0.149 4.149 24 C 0.086 3.914 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.169 0.831 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.279 0.721 32 H 0.166 0.834 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -5.117 0.849 10.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.172 5.172 3 C -0.077 4.077 4 C -0.102 4.102 5 C 0.030 3.970 6 C -0.270 4.270 7 N -0.140 5.140 8 C -0.240 4.240 9 C 0.092 3.908 10 C -0.451 4.451 11 H 0.108 0.892 12 C -0.151 4.151 13 N -0.342 5.342 14 Si 0.735 3.265 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.165 5.165 19 C -0.081 4.081 20 C -0.057 4.057 21 C -0.189 4.189 22 C -0.120 4.120 23 C -0.170 4.170 24 C -0.018 4.018 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.186 0.814 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.183 0.817 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.908 -5.295 0.753 11.259 hybrid contribution 0.499 -0.330 -0.069 0.603 sum -9.409 -5.625 0.684 10.983 Atomic orbital electron populations 1.21832 0.77816 1.03703 1.02477 1.43472 1.05391 1.04336 1.64023 1.21676 0.89773 0.90684 1.05530 1.18818 0.90724 0.90934 1.09675 1.19927 0.91952 0.90400 0.94687 1.22406 0.96887 0.90475 1.17231 1.67610 0.99757 1.39193 1.07468 1.23173 0.93564 0.94818 1.12488 1.19331 0.93275 0.88863 0.89368 1.19551 0.91603 0.96407 1.37579 0.89185 1.26045 0.98812 0.97126 0.93103 1.69890 1.31664 1.08383 1.24229 0.86268 0.81940 0.79398 0.78942 1.19178 1.20049 1.18447 1.69444 0.96176 1.35494 1.15436 1.19051 0.91421 0.92702 1.04962 1.21237 1.01717 0.90988 0.91741 1.20668 0.95807 0.95991 1.06445 1.20709 0.92645 0.98076 1.00584 1.19779 0.98698 0.89162 1.09360 1.18333 0.90352 0.88063 1.05079 0.91742 0.90549 0.90208 0.81426 0.85887 0.85019 0.91016 0.81684 0.86767 0.86726 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 11.00 59.84 0.66 1.50 16 2 N -0.49 -7.62 3.16 -121.55 -0.38 -8.00 16 3 C 0.05 0.86 10.71 -16.48 -0.18 0.69 16 4 C -0.09 -2.03 6.25 -103.15 -0.64 -2.67 16 5 C 0.18 4.42 6.76 -82.78 -0.56 3.86 16 6 C -0.11 -2.62 10.77 -16.67 -0.18 -2.80 16 7 N -0.43 -10.75 10.47 -12.00 -0.13 -10.88 16 8 C -0.07 -1.81 10.97 -16.54 -0.18 -1.99 16 9 C 0.22 5.88 6.46 -84.84 -0.55 5.33 16 10 C -0.42 -10.70 9.14 -37.77 -0.35 -11.04 16 11 H 0.09 2.12 7.86 -52.49 -0.41 1.71 16 12 C 0.07 1.80 5.45 -17.35 -0.09 1.70 16 13 N -0.72 -17.91 9.73 55.55 0.54 -17.37 16 14 Si 0.91 17.74 29.57 -169.99 -5.03 12.71 16 15 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 16 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 17 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 18 N -0.45 -12.08 7.10 -7.53 -0.05 -12.14 16 19 C -0.08 -1.65 6.26 -104.97 -0.66 -2.30 16 20 C -0.04 -0.83 9.78 -39.71 -0.39 -1.22 16 21 C -0.17 -3.02 9.98 -39.93 -0.40 -3.42 16 22 C -0.10 -1.56 10.01 -39.55 -0.40 -1.96 16 23 C -0.15 -2.33 9.94 -39.41 -0.39 -2.72 16 24 C 0.09 1.56 6.79 -83.97 -0.57 0.99 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 27 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.17 2.35 7.26 -52.49 -0.38 1.96 16 29 H 0.12 2.48 7.03 -52.49 -0.37 2.11 16 30 H 0.13 3.03 8.06 -52.49 -0.42 2.60 16 31 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 32 H 0.17 3.93 5.16 -52.49 -0.27 3.66 16 33 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.11 1.36 8.04 -52.49 -0.42 0.93 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -30.65 303.79 -8.87 -39.52 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.52 Total: 7.65 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -4.87 Total: -16.06 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: -0.02 Total: -48.39 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.65 -8.87 -39.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239525345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.344 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds