Wall clock time and date at job start Tue Mar 31 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.36195 * 124.88226 * 2 1 4 4 C 1.35835 * 109.75410 * 179.82085 * 3 2 1 5 5 C 1.47910 * 126.68656 * 180.17189 * 4 3 2 6 6 C 1.40278 * 120.00815 * 6.13828 * 5 4 3 7 7 N 1.32110 * 120.27543 * 179.97438 * 6 5 4 8 8 C 1.31933 * 120.31328 * 0.02562 * 7 6 5 9 9 C 1.40803 * 120.00988 * 359.97438 * 8 7 6 10 10 C 1.41273 * 120.13796 * 180.02562 * 9 8 7 11 11 H 1.07994 * 119.99727 * 13.27028 * 10 9 8 12 12 C 1.40010 * 119.99874 * 193.27131 * 10 9 8 13 13 N 1.30751 * 120.00104 * 8.26170 * 12 10 9 14 14 Si 1.86806 * 119.99991 * 188.26867 * 12 10 9 15 15 H 1.48497 * 109.47334 * 89.99535 * 14 12 10 16 16 H 1.48497 * 109.47072 * 210.00053 * 14 12 10 17 17 H 1.48498 * 109.46614 * 329.99729 * 14 12 10 18 18 N 1.32673 * 120.00768 * 185.86736 * 5 4 3 19 19 C 1.47226 * 106.62489 * 0.42923 * 4 3 2 20 20 C 1.39380 * 133.99876 * 179.73872 * 19 4 3 21 21 C 1.36720 * 119.78929 * 179.97438 * 20 19 4 22 22 C 1.38769 * 120.46661 * 0.02562 * 21 20 19 23 23 C 1.37784 * 120.64258 * 359.96892 * 22 21 20 24 24 C 1.37851 * 124.88913 * 180.30860 * 2 1 3 25 25 H 1.09003 * 109.47569 * 269.69328 * 1 2 3 26 26 H 1.09000 * 109.47462 * 149.69699 * 1 2 3 27 27 H 1.08997 * 109.47664 * 29.69432 * 1 2 3 28 28 H 1.07995 * 125.12107 * 359.97164 * 3 2 1 29 29 H 1.07998 * 119.86433 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.99901 * 179.97438 * 8 7 6 31 31 H 0.97001 * 119.99790 * 179.97438 * 13 12 10 32 32 H 1.08000 * 120.10166 * 0.02656 * 20 19 4 33 33 H 1.07997 * 119.76650 * 180.02562 * 21 20 19 34 34 H 1.08007 * 119.67945 * 179.97438 * 22 21 20 35 35 H 1.08000 * 120.10784 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2438 1.1172 0.0000 4 6 3.5550 0.7628 0.0040 5 6 4.7176 1.6771 0.0089 6 6 4.5220 3.0600 0.1397 7 7 5.5566 3.8815 0.1452 8 6 6.7827 3.4089 0.0273 9 6 6.9936 2.0231 -0.1046 10 6 8.3055 1.5141 -0.2305 11 1 9.1533 2.1468 -0.0135 12 6 8.5063 0.1893 -0.6365 13 7 7.4952 -0.5271 -1.0538 14 14 10.2189 -0.5549 -0.5819 15 1 10.4412 -1.1886 0.7426 16 1 10.3475 -1.5797 -1.6489 17 1 11.2292 0.5121 -0.7959 18 7 5.9461 1.1892 -0.1050 19 6 3.5935 -0.7090 -0.0038 20 6 4.6211 -1.6506 -0.0089 21 6 4.3203 -2.9843 -0.0155 22 6 2.9987 -3.4075 -0.0177 23 6 1.9684 -2.4927 -0.0126 24 6 2.2534 -1.1307 -0.0061 25 1 -0.3634 -0.0055 1.0276 26 1 -0.3634 -0.8872 -0.5185 27 1 -0.3634 0.8927 -0.5090 28 1 1.8745 2.1321 -0.0004 29 1 3.5214 3.4548 0.2371 30 1 7.6248 4.0851 0.0321 31 1 7.6345 -1.4448 -1.3355 32 1 5.6517 -1.3277 -0.0068 33 1 5.1168 -3.7136 -0.0189 34 1 2.7755 -4.4642 -0.0233 35 1 0.9429 -2.8316 -0.0140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239525345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:55 Heat of formation + Delta-G solvation = 84.226313 kcal Electronic energy + Delta-G solvation = -20715.870117 eV Core-core repulsion = 17678.361200 eV Total energy + Delta-G solvation = -3037.508917 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.17559 -40.55404 -37.87308 -35.88742 -34.72979 -33.35045 -31.76224 -31.07834 -29.78744 -27.92119 -26.97484 -24.40143 -24.04626 -23.20910 -22.01827 -20.78866 -19.19116 -18.09492 -17.46363 -17.14261 -16.93614 -16.46500 -16.21950 -16.16799 -15.36038 -14.84244 -14.66021 -14.65325 -14.20129 -13.64694 -13.60675 -13.29272 -13.16792 -13.06738 -12.93101 -12.52412 -12.34122 -12.18349 -11.97655 -11.69264 -11.56631 -11.41750 -11.18270 -10.39650 -9.66017 -9.22303 -9.03676 -8.43170 -8.18252 -6.58704 0.11984 0.59992 0.84988 1.10174 1.41551 1.53433 1.55858 1.94946 2.01435 2.20726 2.83864 3.15512 3.74667 3.89695 3.93357 3.98625 4.07255 4.25009 4.32076 4.37230 4.46762 4.54049 4.67228 4.76567 4.84576 4.87857 4.90294 5.06212 5.10296 5.22170 5.33417 5.45705 5.67540 5.81286 5.81617 5.98074 6.05732 6.18749 6.39171 6.50118 6.58620 6.76970 7.35563 7.97206 8.34713 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.006872 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.400007 B = 4073.372188 C = 5721.255908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.478 5.478 3 C 0.090 3.910 4 C -0.164 4.164 5 C 0.170 3.830 6 C -0.120 4.120 7 N -0.436 5.436 8 C -0.102 4.102 9 C 0.187 3.813 10 C -0.447 4.447 11 H 0.099 0.901 12 C 0.030 3.970 13 N -0.745 5.745 14 Si 0.990 3.010 15 H -0.265 1.265 16 H -0.267 1.267 17 H -0.252 1.252 18 N -0.477 5.477 19 C -0.112 4.112 20 C -0.087 4.087 21 C -0.168 4.168 22 C -0.101 4.101 23 C -0.134 4.134 24 C 0.074 3.926 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.204 0.796 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.284 0.716 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.156 0.844 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 -6.724 0.828 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.160 5.160 3 C -0.040 4.040 4 C -0.172 4.172 5 C 0.022 3.978 6 C -0.280 4.280 7 N -0.148 5.148 8 C -0.269 4.269 9 C 0.061 3.939 10 C -0.479 4.479 11 H 0.117 0.883 12 C -0.193 4.193 13 N -0.366 5.366 14 Si 0.809 3.191 15 H -0.190 1.190 16 H -0.191 1.191 17 H -0.176 1.176 18 N -0.195 5.195 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.187 4.187 22 C -0.120 4.120 23 C -0.155 4.155 24 C -0.031 4.031 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.123 0.877 28 H 0.221 0.779 29 H 0.177 0.823 30 H 0.162 0.838 31 H 0.095 0.905 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.174 0.826 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.734 -6.897 0.731 14.501 hybrid contribution 1.116 0.098 -0.057 1.121 sum -11.619 -6.799 0.674 13.479 Atomic orbital electron populations 1.22305 0.73875 1.06036 1.04480 1.43849 1.07500 1.02968 1.61670 1.22122 0.88504 0.92541 1.00813 1.18931 0.91593 0.91298 1.15400 1.20533 0.92404 0.91714 0.93105 1.22945 0.98016 0.90326 1.16678 1.67616 0.99965 1.39595 1.07582 1.23319 0.94333 0.94760 1.14484 1.19799 0.94245 0.89743 0.90137 1.19933 0.91622 0.97806 1.38490 0.88314 1.26978 1.03080 0.96930 0.92301 1.70015 1.33822 1.08744 1.24017 0.85092 0.76489 0.78533 0.78944 1.18984 1.19150 1.17561 1.69473 0.97136 1.36145 1.16744 1.19336 0.93380 0.92836 1.06126 1.21145 1.00601 0.92987 0.95806 1.20899 0.97853 0.94732 1.05224 1.21137 0.91268 1.00278 0.99271 1.20281 1.00811 0.87862 1.06512 1.18574 0.89350 0.89689 1.05484 0.89789 0.88642 0.87671 0.77889 0.82329 0.83830 0.90515 0.85157 0.85609 0.82601 0.83034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 11.00 127.77 1.41 2.47 16 2 N -0.48 -13.30 3.16 -538.47 -1.70 -15.00 16 3 C 0.09 2.93 10.71 83.46 0.89 3.82 16 4 C -0.16 -7.26 6.25 -18.91 -0.12 -7.38 16 5 C 0.17 8.83 6.76 42.08 0.28 9.11 16 6 C -0.12 -5.79 10.77 85.15 0.92 -4.87 16 7 N -0.44 -22.57 10.47 -191.88 -2.01 -24.58 16 8 C -0.10 -5.45 10.97 85.31 0.94 -4.51 16 9 C 0.19 10.73 6.46 40.20 0.26 10.99 16 10 C -0.45 -24.09 9.14 23.45 0.21 -23.88 16 11 H 0.10 4.90 7.86 -2.91 -0.02 4.88 16 12 C 0.03 1.51 5.45 85.28 0.46 1.98 16 13 N -0.74 -39.24 9.73 21.83 0.21 -39.03 16 14 Si 0.99 37.48 29.57 68.60 2.03 39.51 16 15 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 16 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 17 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 18 N -0.48 -27.42 7.10 -177.75 -1.26 -28.69 16 19 C -0.11 -4.92 6.26 -20.09 -0.13 -5.05 16 20 C -0.09 -3.91 9.78 22.19 0.22 -3.69 16 21 C -0.17 -5.97 9.98 22.04 0.22 -5.75 16 22 C -0.10 -2.82 10.01 22.29 0.22 -2.60 16 23 C -0.13 -3.69 9.94 22.38 0.22 -3.47 16 24 C 0.07 2.52 6.79 38.96 0.26 2.79 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.11 8.07 -2.39 -0.02 1.09 16 27 H 0.10 1.08 8.13 -2.39 -0.02 1.06 16 28 H 0.20 4.92 7.26 -2.91 -0.02 4.90 16 29 H 0.16 6.22 7.03 -2.91 -0.02 6.20 16 30 H 0.14 7.00 8.06 -2.91 -0.02 6.98 16 31 H 0.28 13.59 8.29 -92.71 -0.77 12.82 16 32 H 0.13 6.74 5.16 -2.91 -0.02 6.72 16 33 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 34 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.15 2.84 8.04 -2.91 -0.02 2.82 16 Total: -1.00 -73.56 303.79 4.67 -68.90 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 1.12 Total: 28.91 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 6.28 Total: -30.02 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -4.76 Total: -107.29 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -73.56 4.67 -68.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239525345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.121 kcal (2) G-P(sol) polarization free energy of solvation -73.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds