Wall clock time and date at job start Tue Mar 31 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35890 * 124.82887 * 2 1 4 4 C 1.36561 * 109.67247 * 180.02562 * 3 2 1 5 5 C 1.47400 * 126.74179 * 180.02562 * 4 3 2 6 6 C 1.40717 * 120.81026 * 129.70133 * 5 4 3 7 7 N 1.31478 * 119.07261 * 179.73388 * 6 5 4 8 8 C 1.33767 * 120.84478 * 0.52953 * 7 6 5 9 9 C 1.40772 * 119.10494 * 179.72643 * 8 7 6 10 10 H 1.08008 * 119.99447 * 180.02562 * 9 8 7 11 11 C 1.40010 * 120.00519 * 0.02562 * 9 8 7 12 12 N 1.30743 * 119.99494 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00317 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46993 * 89.99499 * 13 11 9 15 15 H 1.48496 * 109.47283 * 210.00231 * 13 11 9 16 16 H 1.48504 * 109.47025 * 329.99997 * 13 11 9 17 17 N 1.33759 * 121.78134 * 359.73682 * 8 7 6 18 18 C 1.31483 * 120.85006 * 359.97438 * 17 8 7 19 19 C 1.47285 * 106.51355 * 359.78489 * 4 3 2 20 20 C 1.39359 * 133.93173 * 179.58243 * 19 4 3 21 21 C 1.37784 * 119.66553 * 180.36398 * 20 19 4 22 22 C 1.38740 * 120.30643 * 0.25480 * 21 20 19 23 23 C 1.37845 * 120.63787 * 359.97438 * 22 21 20 24 24 C 1.37996 * 124.83261 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46939 * 269.97593 * 1 2 3 26 26 H 1.08994 * 109.46775 * 29.97789 * 1 2 3 27 27 H 1.08997 * 109.46550 * 149.97129 * 1 2 3 28 28 H 1.07998 * 125.16792 * 0.04101 * 3 2 1 29 29 H 1.08011 * 120.46168 * 359.96918 * 6 5 4 30 30 H 0.97008 * 119.99496 * 179.97438 * 12 11 9 31 31 H 1.08005 * 120.46243 * 179.97438 * 18 17 8 32 32 H 1.08002 * 120.17155 * 0.64629 * 20 19 4 33 33 H 1.07998 * 119.84706 * 180.27569 * 21 20 19 34 34 H 1.07989 * 119.67798 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.02273 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2412 1.1155 0.0000 4 6 3.5593 0.7584 -0.0006 5 6 4.7192 1.6680 -0.0002 6 6 5.7630 1.5046 0.9292 7 7 6.7840 2.3323 0.8955 8 6 6.8326 3.3251 0.0003 9 6 7.9405 4.1936 0.0006 10 1 7.9944 5.0003 -0.7156 11 6 8.9725 4.0118 0.9292 12 7 8.9069 3.0356 1.7964 13 14 10.4422 5.1648 0.9300 14 1 10.1697 6.3134 1.8308 15 1 11.6437 4.4348 1.4081 16 1 10.6815 5.6627 -0.4484 17 7 5.8571 3.5150 -0.8949 18 6 4.8072 2.7241 -0.9259 19 6 3.5942 -0.7140 0.0043 20 6 4.6204 -1.6569 -0.0012 21 6 4.3126 -2.9999 -0.0014 22 6 2.9886 -3.4147 -0.0014 23 6 1.9637 -2.4929 -0.0008 24 6 2.2533 -1.1327 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3632 -0.8897 -0.5143 28 1 1.8718 2.1303 0.0006 29 1 5.7278 0.7079 1.6578 30 1 9.6221 2.9094 2.4395 31 1 4.0229 2.8835 -1.6511 32 1 5.6518 -1.3366 -0.0007 33 1 5.1055 -3.7331 -0.0011 34 1 2.7589 -4.4698 -0.0012 35 1 0.9366 -2.8269 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239535750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:19 Heat of formation + Delta-G solvation = 105.734242 kcal Electronic energy + Delta-G solvation = -20101.538743 eV Core-core repulsion = 17064.962480 eV Total energy + Delta-G solvation = -3036.576263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90190 -38.66674 -36.71279 -34.03384 -32.91968 -31.73869 -30.18106 -30.01485 -28.42536 -26.95461 -24.95438 -22.74670 -22.33448 -21.98142 -20.84963 -19.27165 -17.85175 -16.65842 -16.20182 -15.82305 -15.18621 -15.13976 -14.85814 -14.46442 -13.85146 -13.61943 -13.15058 -12.94406 -12.73117 -12.66446 -12.44038 -12.22746 -12.00086 -11.37885 -11.28710 -11.23931 -11.02487 -10.72679 -10.63174 -10.29482 -9.57690 -9.27199 -9.13337 -9.08220 -8.04853 -7.86669 -7.36777 -6.86795 -6.52166 -4.69686 1.42456 1.90459 2.41635 2.99801 3.04419 3.05328 3.08174 3.09539 3.35411 3.86208 4.24473 4.63409 4.80067 4.94414 5.14999 5.22561 5.24919 5.34790 5.40187 5.75551 5.80685 5.82654 5.91741 5.97839 6.01693 6.18218 6.34265 6.38304 6.40925 6.73496 6.89671 6.94878 7.06321 7.11352 7.22790 7.38262 7.58114 7.65236 7.72885 8.14640 8.49595 8.56615 9.13541 10.09632 10.28510 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.004131 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.687025 B = 6776.353107 C = 7477.082461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.488 5.488 3 C 0.018 3.982 4 C -0.057 4.057 5 C -0.289 4.289 6 C 0.179 3.821 7 N -0.508 5.508 8 C 0.384 3.616 9 C -0.390 4.390 10 H 0.093 0.907 11 C 0.064 3.936 12 N -0.704 5.704 13 Si 0.919 3.081 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.259 1.259 17 N -0.596 5.596 18 C 0.180 3.820 19 C -0.097 4.097 20 C -0.058 4.058 21 C -0.160 4.160 22 C -0.105 4.105 23 C -0.139 4.139 24 C 0.094 3.906 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.126 0.874 30 H 0.276 0.724 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.431 -8.081 -0.948 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.172 5.172 3 C -0.106 4.106 4 C -0.065 4.065 5 C -0.299 4.299 6 C 0.003 3.997 7 N -0.224 5.224 8 C 0.149 3.851 9 C -0.425 4.425 10 H 0.111 0.889 11 C -0.164 4.164 12 N -0.325 5.325 13 Si 0.743 3.257 14 H -0.192 1.192 15 H -0.199 1.199 16 H -0.183 1.183 17 N -0.314 5.314 18 C 0.006 3.994 19 C -0.102 4.102 20 C -0.076 4.076 21 C -0.179 4.179 22 C -0.124 4.124 23 C -0.160 4.160 24 C -0.012 4.012 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.181 0.819 29 H 0.144 0.856 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.738 -7.411 -0.755 13.068 hybrid contribution -0.408 -0.243 0.082 0.482 sum -11.145 -7.653 -0.672 13.537 Atomic orbital electron populations 1.21826 0.78014 1.03605 1.02437 1.43406 1.05311 1.04359 1.64110 1.21905 0.89966 0.90401 1.08334 1.18863 0.91338 0.89722 1.06619 1.19107 0.99323 1.03929 1.07569 1.23031 0.88299 0.95168 0.93237 1.69366 1.22897 1.05668 1.24431 1.19898 0.90768 0.89644 0.84743 1.19298 0.99572 1.10429 1.13163 0.88867 1.26150 0.99915 0.95846 0.94479 1.70178 1.29376 1.22909 1.09996 0.86131 0.79462 0.80159 0.79996 1.19197 1.19934 1.18251 1.68632 1.04140 1.30890 1.27760 1.22647 0.94228 0.89047 0.93512 1.19269 0.91755 0.93466 1.05758 1.20612 0.98504 0.91756 0.96756 1.20818 0.96132 0.95358 1.05638 1.20676 0.92413 0.98268 1.01033 1.19876 0.98926 0.89320 1.07900 1.18231 0.90274 0.88008 1.04702 0.91821 0.90240 0.90677 0.81914 0.85607 0.91249 0.85584 0.86005 0.86447 0.86427 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.99 59.85 0.66 1.43 16 2 N -0.49 -7.01 3.16 -121.40 -0.38 -7.39 16 3 C 0.02 0.29 11.20 -16.36 -0.18 0.10 16 4 C -0.06 -1.11 5.81 -103.10 -0.60 -1.71 16 5 C -0.29 -6.47 5.84 -104.30 -0.61 -7.08 16 6 C 0.18 4.37 11.09 -16.77 -0.19 4.18 16 7 N -0.51 -14.07 7.81 -12.38 -0.10 -14.17 16 8 C 0.38 10.85 7.35 -158.08 -1.16 9.69 16 9 C -0.39 -10.66 9.33 -37.96 -0.35 -11.01 16 10 H 0.09 2.44 7.85 -52.48 -0.41 2.03 16 11 C 0.06 1.60 5.49 -17.35 -0.10 1.51 16 12 N -0.70 -18.38 11.39 55.55 0.63 -17.75 16 13 Si 0.92 18.32 29.56 -169.99 -5.02 13.29 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 15 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 17 N -0.60 -15.83 10.33 -12.39 -0.13 -15.96 16 18 C 0.18 4.16 11.05 -16.77 -0.19 3.97 16 19 C -0.10 -1.78 6.34 -104.96 -0.67 -2.45 16 20 C -0.06 -0.99 10.09 -39.33 -0.40 -1.39 16 21 C -0.16 -2.30 10.03 -39.56 -0.40 -2.70 16 22 C -0.10 -1.36 10.01 -39.54 -0.40 -1.76 16 23 C -0.14 -1.89 9.91 -39.42 -0.39 -2.28 16 24 C 0.09 1.50 6.79 -83.94 -0.57 0.93 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 27 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 28 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.13 2.84 8.06 -52.48 -0.42 2.42 16 30 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 31 H 0.13 2.50 8.06 -52.48 -0.42 2.08 16 32 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.11 1.20 8.02 -52.49 -0.42 0.78 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -31.45 311.71 -9.60 -41.05 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.77 Total: 4.78 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -5.53 Total: -8.56 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.02 Total: -55.26 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.45 -9.60 -41.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239535750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.783 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds