Wall clock time and date at job start Tue Mar 31 2020 01:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.35890 * 124.82887 * 2 1 4 4 C 1.36561 * 109.67247 * 180.02562 * 3 2 1 5 5 C 1.47400 * 126.74179 * 180.02562 * 4 3 2 6 6 C 1.40717 * 120.81026 * 129.70133 * 5 4 3 7 7 N 1.31478 * 119.07261 * 179.73388 * 6 5 4 8 8 C 1.33767 * 120.84478 * 0.52953 * 7 6 5 9 9 C 1.40772 * 119.10494 * 179.72643 * 8 7 6 10 10 H 1.08008 * 119.99447 * 180.02562 * 9 8 7 11 11 C 1.40010 * 120.00519 * 0.02562 * 9 8 7 12 12 N 1.30743 * 119.99494 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00317 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46993 * 89.99499 * 13 11 9 15 15 H 1.48496 * 109.47283 * 210.00231 * 13 11 9 16 16 H 1.48504 * 109.47025 * 329.99997 * 13 11 9 17 17 N 1.33759 * 121.78134 * 359.73682 * 8 7 6 18 18 C 1.31483 * 120.85006 * 359.97438 * 17 8 7 19 19 C 1.47285 * 106.51355 * 359.78489 * 4 3 2 20 20 C 1.39359 * 133.93173 * 179.58243 * 19 4 3 21 21 C 1.37784 * 119.66553 * 180.36398 * 20 19 4 22 22 C 1.38740 * 120.30643 * 0.25480 * 21 20 19 23 23 C 1.37845 * 120.63787 * 359.97438 * 22 21 20 24 24 C 1.37996 * 124.83261 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46939 * 269.97593 * 1 2 3 26 26 H 1.08994 * 109.46775 * 29.97789 * 1 2 3 27 27 H 1.08997 * 109.46550 * 149.97129 * 1 2 3 28 28 H 1.07998 * 125.16792 * 0.04101 * 3 2 1 29 29 H 1.08011 * 120.46168 * 359.96918 * 6 5 4 30 30 H 0.97008 * 119.99496 * 179.97438 * 12 11 9 31 31 H 1.08005 * 120.46243 * 179.97438 * 18 17 8 32 32 H 1.08002 * 120.17155 * 0.64629 * 20 19 4 33 33 H 1.07998 * 119.84706 * 180.27569 * 21 20 19 34 34 H 1.07989 * 119.67798 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.02273 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2412 1.1155 0.0000 4 6 3.5593 0.7584 -0.0006 5 6 4.7192 1.6680 -0.0002 6 6 5.7630 1.5046 0.9292 7 7 6.7840 2.3323 0.8955 8 6 6.8326 3.3251 0.0003 9 6 7.9405 4.1936 0.0006 10 1 7.9944 5.0003 -0.7156 11 6 8.9725 4.0118 0.9292 12 7 8.9069 3.0356 1.7964 13 14 10.4422 5.1648 0.9300 14 1 10.1697 6.3134 1.8308 15 1 11.6437 4.4348 1.4081 16 1 10.6815 5.6627 -0.4484 17 7 5.8571 3.5150 -0.8949 18 6 4.8072 2.7241 -0.9259 19 6 3.5942 -0.7140 0.0043 20 6 4.6204 -1.6569 -0.0012 21 6 4.3126 -2.9999 -0.0014 22 6 2.9886 -3.4147 -0.0014 23 6 1.9637 -2.4929 -0.0008 24 6 2.2533 -1.1327 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3632 -0.8897 -0.5143 28 1 1.8718 2.1303 0.0006 29 1 5.7278 0.7079 1.6578 30 1 9.6221 2.9094 2.4395 31 1 4.0229 2.8835 -1.6511 32 1 5.6518 -1.3366 -0.0007 33 1 5.1055 -3.7331 -0.0011 34 1 2.7589 -4.4698 -0.0012 35 1 0.9366 -2.8269 -0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239535750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:18 Heat of formation + Delta-G solvation = 88.551619 kcal Electronic energy + Delta-G solvation = -20102.283837 eV Core-core repulsion = 17064.962480 eV Total energy + Delta-G solvation = -3037.321357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.11505 -40.58243 -37.84085 -35.84543 -34.34328 -33.69350 -31.80239 -31.10017 -29.74551 -28.50916 -26.30512 -24.58680 -23.87567 -23.40398 -22.07666 -20.63871 -19.74845 -17.91701 -17.85593 -17.22719 -16.80874 -16.29182 -16.17484 -16.06053 -15.09095 -14.84210 -14.71035 -14.49680 -14.47753 -13.94250 -13.67245 -13.44112 -13.17101 -13.05724 -12.90558 -12.66890 -12.46656 -12.10946 -11.95741 -11.81448 -11.32268 -11.11417 -11.00666 -10.60131 -9.73975 -9.29338 -9.04580 -8.46326 -8.20954 -6.66690 0.19888 0.61610 0.79117 1.08555 1.40420 1.49194 1.57103 1.91328 2.02725 2.20544 2.75802 3.05354 3.85462 3.87272 3.99387 4.02230 4.04920 4.07144 4.22725 4.34683 4.44428 4.51040 4.55771 4.65610 4.76237 4.82043 4.95482 4.98549 5.06048 5.13919 5.29180 5.49083 5.65044 5.74973 5.77551 5.94917 5.98674 6.15305 6.36296 6.52003 6.54983 6.62078 7.19924 8.21904 8.36301 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029169 B = 0.004131 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.687025 B = 6776.353107 C = 7477.082461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.482 5.482 3 C 0.050 3.950 4 C -0.119 4.119 5 C -0.258 4.258 6 C 0.157 3.843 7 N -0.537 5.537 8 C 0.355 3.645 9 C -0.432 4.432 10 H 0.091 0.909 11 C 0.022 3.978 12 N -0.744 5.744 13 Si 1.002 2.998 14 H -0.258 1.258 15 H -0.262 1.262 16 H -0.256 1.256 17 N -0.618 5.618 18 C 0.165 3.835 19 C -0.125 4.125 20 C -0.096 4.096 21 C -0.153 4.153 22 C -0.103 4.103 23 C -0.129 4.129 24 C 0.079 3.921 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.188 0.812 29 H 0.133 0.867 30 H 0.285 0.715 31 H 0.161 0.839 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.062 -9.484 -1.173 17.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.164 5.164 3 C -0.077 4.077 4 C -0.128 4.128 5 C -0.268 4.268 6 C -0.017 4.017 7 N -0.254 5.254 8 C 0.119 3.881 9 C -0.467 4.467 10 H 0.109 0.891 11 C -0.202 4.202 12 N -0.366 5.366 13 Si 0.820 3.180 14 H -0.183 1.183 15 H -0.186 1.186 16 H -0.179 1.179 17 N -0.337 5.337 18 C -0.007 4.007 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.172 4.172 22 C -0.122 4.122 23 C -0.149 4.149 24 C -0.027 4.027 25 H 0.097 0.903 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.204 0.796 29 H 0.150 0.850 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.114 0.886 33 H 0.155 0.845 34 H 0.175 0.825 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.457 -8.878 -0.983 16.152 hybrid contribution 0.091 -0.038 0.126 0.160 sum -13.366 -8.917 -0.857 16.091 Atomic orbital electron populations 1.22233 0.74540 1.05769 1.04099 1.43723 1.07234 1.03191 1.62248 1.22171 0.89157 0.91946 1.04384 1.18761 0.91621 0.90244 1.12132 1.19309 0.99344 1.03099 1.05038 1.23292 0.88920 0.95174 0.94298 1.69302 1.24475 1.06461 1.25211 1.20297 0.91821 0.90425 0.85606 1.19602 1.00971 1.11229 1.14860 0.89095 1.27118 1.02430 0.97379 0.93226 1.70253 1.30837 1.24686 1.10835 0.84927 0.75245 0.77691 0.80111 1.18280 1.18619 1.17906 1.68637 1.04956 1.32217 1.27902 1.23230 0.94212 0.88993 0.94235 1.19431 0.93545 0.93037 1.06919 1.20612 0.97419 0.93386 1.00030 1.21135 0.97957 0.94361 1.03740 1.21140 0.91331 1.00287 0.99472 1.20341 1.00971 0.88071 1.05548 1.18512 0.89448 0.89463 1.05322 0.90320 0.88180 0.88609 0.79553 0.84995 0.90440 0.82205 0.88587 0.84495 0.82512 0.83422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.99 127.77 1.40 2.42 16 2 N -0.48 -12.26 3.16 -538.00 -1.70 -13.96 16 3 C 0.05 1.52 11.20 83.67 0.94 2.46 16 4 C -0.12 -4.62 5.81 -18.88 -0.11 -4.73 16 5 C -0.26 -12.00 5.84 -19.65 -0.11 -12.12 16 6 C 0.16 8.17 11.09 85.35 0.95 9.12 16 7 N -0.54 -31.69 7.81 -193.09 -1.51 -33.20 16 8 C 0.35 21.22 7.35 134.76 0.99 22.21 16 9 C -0.43 -24.85 9.33 23.32 0.22 -24.64 16 10 H 0.09 5.03 7.85 -2.91 -0.02 5.00 16 11 C 0.02 1.15 5.49 85.28 0.47 1.62 16 12 N -0.74 -40.71 11.39 21.83 0.25 -40.46 16 13 Si 1.00 38.53 29.56 68.60 2.03 40.56 16 14 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 15 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 16 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 17 N -0.62 -34.31 10.33 -193.10 -2.00 -36.31 16 18 C 0.17 7.87 11.05 85.35 0.94 8.81 16 19 C -0.12 -4.56 6.34 -20.08 -0.13 -4.69 16 20 C -0.10 -3.39 10.09 22.43 0.23 -3.16 16 21 C -0.15 -4.19 10.03 22.28 0.22 -3.97 16 22 C -0.10 -2.30 10.01 22.30 0.22 -2.08 16 23 C -0.13 -2.97 9.91 22.38 0.22 -2.75 16 24 C 0.08 2.32 6.79 38.92 0.26 2.58 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.10 1.02 8.13 -2.39 -0.02 1.00 16 27 H 0.10 0.98 8.03 -2.39 -0.02 0.96 16 28 H 0.19 4.63 8.06 -2.91 -0.02 4.61 16 29 H 0.13 6.45 8.06 -2.91 -0.02 6.42 16 30 H 0.28 13.85 8.29 -92.70 -0.77 13.08 16 31 H 0.16 6.29 8.06 -2.91 -0.02 6.27 16 32 H 0.10 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 34 H 0.16 2.28 8.06 -2.92 -0.02 2.26 16 35 H 0.15 2.30 8.02 -2.91 -0.02 2.27 16 Total: -1.00 -73.98 311.71 4.90 -69.08 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 1.11 Total: 23.21 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 6.71 Total: -8.91 kcal Atomic # 7 Polarization: -118.98 SS G_CDS: -4.95 Total: -123.93 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -73.98 4.90 -69.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239535750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.633 kcal (2) G-P(sol) polarization free energy of solvation -73.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds