Wall clock time and date at job start Tue Mar 31 2020 01:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36847 * 125.01571 * 2 1 4 4 C 1.34206 * 109.96120 * 179.97438 * 3 2 1 5 5 C 1.46569 * 106.93321 * 0.02562 * 4 3 2 6 6 C 1.39299 * 133.95419 * 180.02562 * 5 4 3 7 7 C 1.39256 * 119.38264 * 179.97438 * 6 5 4 8 8 C 1.47694 * 119.98137 * 179.97438 * 7 6 5 9 9 N 1.32909 * 120.25525 * 225.77391 * 8 7 6 10 10 C 1.31999 * 120.07450 * 179.97438 * 9 8 7 11 11 C 1.39200 * 120.59794 * 0.02562 * 10 9 8 12 12 N 1.31608 * 120.51430 * 359.97438 * 11 10 9 13 13 C 1.33976 * 119.90483 * 0.02562 * 12 11 10 14 14 C 1.40749 * 120.29259 * 180.02562 * 13 12 11 15 15 H 1.08007 * 120.00224 * 175.64090 * 14 13 12 16 16 C 1.40152 * 119.99687 * 355.64233 * 14 13 12 17 17 N 1.30698 * 120.00550 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99773 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47205 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47040 * 119.99853 * 18 16 14 21 21 H 1.48494 * 109.47217 * 240.00085 * 18 16 14 22 22 C 1.40261 * 120.03631 * 0.25523 * 7 6 5 23 23 C 1.36305 * 120.66363 * 359.49778 * 22 7 6 24 24 C 1.37502 * 125.01784 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47722 * 90.02149 * 1 2 3 26 26 H 1.09000 * 109.47231 * 210.02065 * 1 2 3 27 27 H 1.09009 * 109.47281 * 330.01874 * 1 2 3 28 28 H 1.08000 * 125.02410 * 359.97438 * 3 2 1 29 29 H 1.07998 * 126.53069 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.30854 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.70065 * 180.02562 * 10 9 8 32 32 H 1.08000 * 119.74213 * 180.27053 * 11 10 9 33 33 H 0.96992 * 120.00371 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.66223 * 179.72165 * 22 7 6 35 35 H 1.08000 * 119.87607 * 180.24147 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.1208 0.0000 4 6 3.5462 0.7722 0.0006 5 6 3.5943 -0.6927 0.0003 6 6 4.6283 -1.6262 0.0011 7 6 4.3223 -2.9847 0.0011 8 6 5.4081 -3.9858 0.0014 9 7 5.3579 -5.0285 -0.8213 10 6 6.3306 -5.9208 -0.8184 11 6 7.4161 -5.7829 0.0420 12 7 7.4897 -4.7596 0.8662 13 6 6.5137 -3.8418 0.8804 14 6 6.5844 -2.7438 1.7582 15 1 5.8318 -1.9702 1.7170 16 6 7.6313 -2.6545 2.6857 17 7 8.5417 -3.5909 2.7359 18 14 7.7254 -1.1969 3.8503 19 1 6.5832 -0.2834 3.5933 20 1 7.6665 -1.6797 5.2533 21 1 9.0010 -0.4692 3.6304 22 6 2.9834 -3.4028 -0.0051 23 6 1.9704 -2.4909 -0.0009 24 6 2.2540 -1.1261 0.0005 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5136 28 1 1.8816 2.1359 -0.0004 29 1 4.3924 1.4432 0.0003 30 1 5.6576 -1.2993 0.0017 31 1 6.2838 -6.7656 -1.4897 32 1 8.2064 -6.5189 0.0297 33 1 9.2660 -3.5292 3.3781 34 1 2.7530 -4.4579 -0.0096 35 1 0.9440 -2.8270 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239938984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:59 Heat of formation + Delta-G solvation = 107.410887 kcal Electronic energy + Delta-G solvation = -20552.499098 eV Core-core repulsion = 17515.995540 eV Total energy + Delta-G solvation = -3036.503558 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80458 -38.94932 -36.42475 -34.11991 -32.56351 -32.09824 -31.11718 -28.86239 -28.22421 -26.28702 -25.75487 -22.92011 -22.27315 -21.48134 -20.11908 -19.82365 -17.65275 -16.73518 -16.04950 -15.92750 -15.20318 -15.06863 -14.85750 -14.18535 -13.64843 -13.58949 -13.05313 -12.80493 -12.74312 -12.53195 -12.42443 -12.16452 -11.95819 -11.44650 -11.39318 -11.20200 -10.85131 -10.55368 -10.30441 -10.01328 -9.83074 -9.51440 -9.17045 -9.01322 -8.05346 -7.48624 -7.40632 -6.92554 -6.53388 -4.66998 1.72227 2.00171 2.61706 3.00753 3.02590 3.09284 3.12089 3.13733 3.22760 3.83829 4.54331 4.66224 4.81713 5.02936 5.17918 5.22272 5.36668 5.51703 5.59340 5.74638 5.88975 6.01616 6.08458 6.16266 6.24177 6.35181 6.47355 6.55004 6.73344 6.74907 6.96840 7.07224 7.18924 7.24070 7.30136 7.54592 7.66338 7.69299 7.80253 8.07628 8.39126 8.66013 9.25508 9.83735 10.07902 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.006660 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.042661 B = 4203.256679 C = 5685.087514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.494 5.494 3 C 0.032 3.968 4 C -0.198 4.198 5 C -0.110 4.110 6 C -0.059 4.059 7 C -0.001 4.001 8 C -0.021 4.021 9 N -0.414 5.414 10 C -0.121 4.121 11 C 0.085 3.915 12 N -0.454 5.454 13 C 0.219 3.781 14 C -0.405 4.405 15 H 0.105 0.895 16 C 0.065 3.935 17 N -0.704 5.704 18 Si 0.906 3.094 19 H -0.253 1.253 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.073 4.073 23 C -0.143 4.143 24 C 0.085 3.915 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.160 0.840 29 H 0.142 0.858 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.129 0.871 33 H 0.277 0.723 34 H 0.120 0.880 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 7.511 -1.526 12.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.180 5.180 3 C -0.092 4.092 4 C -0.224 4.224 5 C -0.114 4.114 6 C -0.078 4.078 7 C -0.004 4.004 8 C -0.169 4.169 9 N -0.127 5.127 10 C -0.282 4.282 11 C -0.086 4.086 12 N -0.171 5.171 13 C 0.094 3.906 14 C -0.435 4.435 15 H 0.123 0.877 16 C -0.162 4.162 17 N -0.324 5.324 18 Si 0.729 3.271 19 H -0.176 1.176 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.093 4.093 23 C -0.163 4.163 24 C -0.020 4.020 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.177 0.823 29 H 0.160 0.840 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.169 7.457 -1.388 12.686 hybrid contribution 0.098 0.395 0.524 0.663 sum -10.071 7.851 -0.864 12.799 Atomic orbital electron populations 1.21803 0.78154 1.03573 1.02311 1.43627 1.05255 1.04495 1.64592 1.21583 0.90595 0.90625 1.06370 1.21677 0.95686 0.93235 1.11774 1.19095 0.92004 0.93155 1.07122 1.20790 0.98253 0.90934 0.97866 1.18036 0.91352 0.91314 0.99670 1.20111 0.97574 0.96805 1.02379 1.67708 1.25809 1.00775 1.18371 1.22526 0.96359 1.02121 1.07183 1.23514 0.96419 0.96290 0.92371 1.69552 1.25860 1.01971 1.19696 1.19242 0.87461 0.92568 0.91349 1.20062 1.07264 1.04829 1.11311 0.87714 1.26240 0.94853 0.97295 0.97859 1.70087 1.07103 1.28751 1.26482 0.86248 0.79800 0.81262 0.79749 1.17598 1.19586 1.19473 1.20647 0.91523 0.98683 0.98409 1.19488 0.98798 0.89057 1.09004 1.18274 0.90061 0.87984 1.05686 0.91937 0.90485 0.90550 0.82255 0.83980 0.85010 0.85603 0.85372 0.91138 0.86186 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 11.01 59.85 0.66 1.45 16 2 N -0.49 -7.02 3.17 -121.71 -0.39 -7.41 16 3 C 0.03 0.43 11.28 -16.73 -0.19 0.24 16 4 C -0.20 -3.15 11.09 -37.65 -0.42 -3.56 16 5 C -0.11 -2.11 6.36 -105.15 -0.67 -2.78 16 6 C -0.06 -1.26 7.55 -38.81 -0.29 -1.55 16 7 C 0.00 -0.03 5.31 -104.90 -0.56 -0.58 16 8 C -0.02 -0.55 6.39 -82.11 -0.52 -1.07 16 9 N -0.41 -10.41 10.32 -8.98 -0.09 -10.50 16 10 C -0.12 -2.83 11.22 -17.12 -0.19 -3.02 16 11 C 0.08 2.04 11.22 -17.29 -0.19 1.85 16 12 N -0.45 -12.42 8.05 -10.72 -0.09 -12.51 16 13 C 0.22 5.94 6.53 -84.55 -0.55 5.39 16 14 C -0.40 -10.48 7.91 -37.92 -0.30 -10.78 16 15 H 0.11 2.58 4.77 -52.48 -0.25 2.33 16 16 C 0.06 1.60 5.50 -17.32 -0.10 1.50 16 17 N -0.70 -18.11 11.49 55.56 0.64 -17.47 16 18 Si 0.91 18.09 29.56 -169.99 -5.03 13.06 16 19 H -0.25 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.07 -1.47 9.60 -39.52 -0.38 -1.85 16 23 C -0.14 -2.51 9.86 -39.85 -0.39 -2.90 16 24 C 0.08 1.50 6.81 -83.90 -0.57 0.93 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 27 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 28 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.13 2.89 6.74 -52.49 -0.35 2.53 16 31 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 32 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 33 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 34 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 35 H 0.11 1.56 8.03 -52.49 -0.42 1.14 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -31.39 304.02 -8.58 -39.97 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -3.54 Total: 7.01 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -4.67 Total: -16.74 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: 0.07 Total: -47.89 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.39 -8.58 -39.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239938984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.378 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds