Wall clock time and date at job start Tue Mar 31 2020 01:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36847 * 125.01571 * 2 1 4 4 C 1.34206 * 109.96120 * 179.97438 * 3 2 1 5 5 C 1.46569 * 106.93321 * 0.02562 * 4 3 2 6 6 C 1.39299 * 133.95419 * 180.02562 * 5 4 3 7 7 C 1.39256 * 119.38264 * 179.97438 * 6 5 4 8 8 C 1.47694 * 119.98137 * 179.97438 * 7 6 5 9 9 N 1.32909 * 120.25525 * 225.77391 * 8 7 6 10 10 C 1.31999 * 120.07450 * 179.97438 * 9 8 7 11 11 C 1.39200 * 120.59794 * 0.02562 * 10 9 8 12 12 N 1.31608 * 120.51430 * 359.97438 * 11 10 9 13 13 C 1.33976 * 119.90483 * 0.02562 * 12 11 10 14 14 C 1.40749 * 120.29259 * 180.02562 * 13 12 11 15 15 H 1.08007 * 120.00224 * 175.64090 * 14 13 12 16 16 C 1.40152 * 119.99687 * 355.64233 * 14 13 12 17 17 N 1.30698 * 120.00550 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99773 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47205 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47040 * 119.99853 * 18 16 14 21 21 H 1.48494 * 109.47217 * 240.00085 * 18 16 14 22 22 C 1.40261 * 120.03631 * 0.25523 * 7 6 5 23 23 C 1.36305 * 120.66363 * 359.49778 * 22 7 6 24 24 C 1.37502 * 125.01784 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47722 * 90.02149 * 1 2 3 26 26 H 1.09000 * 109.47231 * 210.02065 * 1 2 3 27 27 H 1.09009 * 109.47281 * 330.01874 * 1 2 3 28 28 H 1.08000 * 125.02410 * 359.97438 * 3 2 1 29 29 H 1.07998 * 126.53069 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.30854 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.70065 * 180.02562 * 10 9 8 32 32 H 1.08000 * 119.74213 * 180.27053 * 11 10 9 33 33 H 0.96992 * 120.00371 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.66223 * 179.72165 * 22 7 6 35 35 H 1.08000 * 119.87607 * 180.24147 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2502 1.1208 0.0000 4 6 3.5462 0.7722 0.0006 5 6 3.5943 -0.6927 0.0003 6 6 4.6283 -1.6262 0.0011 7 6 4.3223 -2.9847 0.0011 8 6 5.4081 -3.9858 0.0014 9 7 5.3579 -5.0285 -0.8213 10 6 6.3306 -5.9208 -0.8184 11 6 7.4161 -5.7829 0.0420 12 7 7.4897 -4.7596 0.8662 13 6 6.5137 -3.8418 0.8804 14 6 6.5844 -2.7438 1.7582 15 1 5.8318 -1.9702 1.7170 16 6 7.6313 -2.6545 2.6857 17 7 8.5417 -3.5909 2.7359 18 14 7.7254 -1.1969 3.8503 19 1 6.5832 -0.2834 3.5933 20 1 7.6665 -1.6797 5.2533 21 1 9.0010 -0.4692 3.6304 22 6 2.9834 -3.4028 -0.0051 23 6 1.9704 -2.4909 -0.0009 24 6 2.2540 -1.1261 0.0005 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5141 27 1 -0.3634 0.8902 0.5136 28 1 1.8816 2.1359 -0.0004 29 1 4.3924 1.4432 0.0003 30 1 5.6576 -1.2993 0.0017 31 1 6.2838 -6.7656 -1.4897 32 1 8.2064 -6.5189 0.0297 33 1 9.2660 -3.5292 3.3781 34 1 2.7530 -4.4579 -0.0096 35 1 0.9440 -2.8270 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239938984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:59 Heat of formation + Delta-G solvation = 89.134765 kcal Electronic energy + Delta-G solvation = -20553.291610 eV Core-core repulsion = 17515.995540 eV Total energy + Delta-G solvation = -3037.296070 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.07430 -40.79980 -37.88359 -35.99646 -33.98683 -33.68848 -32.84274 -30.31182 -29.71160 -28.00108 -26.98144 -24.59643 -23.98599 -23.07066 -21.66951 -21.03545 -19.53245 -18.09466 -17.66750 -17.45760 -16.81692 -16.58220 -16.09039 -15.89932 -15.19652 -14.89760 -14.75190 -14.40456 -14.02344 -13.91862 -13.64233 -13.44232 -13.23249 -13.02781 -13.01767 -12.83532 -12.34904 -12.07941 -11.84379 -11.74473 -11.54906 -11.46696 -10.99913 -10.44410 -9.82214 -9.35791 -8.85864 -8.43651 -8.30842 -6.59965 0.22571 0.43713 0.85173 1.26329 1.37000 1.50222 1.53927 1.92822 2.06334 2.16997 2.74825 3.06400 3.72966 3.83213 3.91103 4.03327 4.12916 4.21997 4.27456 4.42378 4.54697 4.61012 4.68284 4.70754 4.79022 4.86582 4.90594 5.05813 5.10949 5.13103 5.24481 5.32714 5.61008 5.82387 5.88324 5.90852 5.99524 6.17208 6.38234 6.50093 6.58650 6.74641 7.34346 7.91438 8.26993 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.006660 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.042661 B = 4203.256679 C = 5685.087514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.490 5.490 3 C 0.066 3.934 4 C -0.235 4.235 5 C -0.132 4.132 6 C -0.074 4.074 7 C -0.033 4.033 8 C -0.032 4.032 9 N -0.431 5.431 10 C -0.123 4.123 11 C 0.072 3.928 12 N -0.489 5.489 13 C 0.186 3.814 14 C -0.427 4.427 15 H 0.107 0.893 16 C 0.022 3.978 17 N -0.741 5.741 18 Si 0.982 3.018 19 H -0.251 1.251 20 H -0.262 1.262 21 H -0.259 1.259 22 C -0.094 4.094 23 C -0.125 4.125 24 C 0.075 3.925 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.213 0.787 29 H 0.154 0.846 30 H 0.110 0.890 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.286 0.714 34 H 0.116 0.884 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 9.944 -1.205 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.173 5.173 3 C -0.059 4.059 4 C -0.260 4.260 5 C -0.136 4.136 6 C -0.094 4.094 7 C -0.035 4.035 8 C -0.179 4.179 9 N -0.144 5.144 10 C -0.283 4.283 11 C -0.098 4.098 12 N -0.206 5.206 13 C 0.062 3.938 14 C -0.457 4.457 15 H 0.125 0.875 16 C -0.202 4.202 17 N -0.362 5.362 18 Si 0.801 3.199 19 H -0.174 1.174 20 H -0.187 1.187 21 H -0.183 1.183 22 C -0.114 4.114 23 C -0.145 4.145 24 C -0.032 4.032 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.128 0.872 28 H 0.229 0.771 29 H 0.171 0.829 30 H 0.128 0.872 31 H 0.179 0.821 32 H 0.177 0.823 33 H 0.097 0.903 34 H 0.134 0.866 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.859 9.872 -1.090 16.249 hybrid contribution 0.778 -0.311 0.320 0.896 sum -12.082 9.562 -0.770 15.427 Atomic orbital electron populations 1.22216 0.74804 1.05627 1.04058 1.44033 1.07248 1.03378 1.62653 1.22353 0.89474 0.92309 1.01805 1.21947 0.97828 0.91647 1.14583 1.19457 0.92328 0.94875 1.06988 1.20629 0.98050 0.91218 0.99489 1.18105 0.91821 0.91284 1.02301 1.20550 0.98123 0.97428 1.01819 1.67793 1.26587 1.01326 1.18664 1.23101 0.95604 1.02531 1.07086 1.24036 0.97564 0.96231 0.91969 1.69495 1.26704 1.03130 1.21279 1.19682 0.88320 0.93367 0.92467 1.20327 1.08281 1.04963 1.12113 0.87490 1.27157 0.93899 1.00106 0.99034 1.70155 1.07827 1.30661 1.27553 0.85141 0.80035 0.77391 0.77336 1.17433 1.18691 1.18310 1.20620 0.91189 0.99165 1.00428 1.19728 0.99686 0.88784 1.06310 1.18397 0.90278 0.89057 1.05452 0.90272 0.89892 0.87243 0.77055 0.82877 0.87218 0.82146 0.82317 0.90315 0.86578 0.83725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 11.01 127.77 1.41 2.39 16 2 N -0.49 -11.86 3.17 -538.99 -1.71 -13.58 16 3 C 0.07 1.46 11.28 82.99 0.94 2.40 16 4 C -0.24 -7.06 11.09 23.52 0.26 -6.79 16 5 C -0.13 -5.07 6.36 -20.21 -0.13 -5.20 16 6 C -0.07 -3.35 7.55 22.77 0.17 -3.18 16 7 C -0.03 -1.56 5.31 -20.04 -0.11 -1.67 16 8 C -0.03 -1.75 6.39 42.41 0.27 -1.48 16 9 N -0.43 -22.49 10.32 -182.31 -1.88 -24.37 16 10 C -0.12 -5.86 11.22 84.90 0.95 -4.91 16 11 C 0.07 3.54 11.22 84.96 0.95 4.50 16 12 N -0.49 -27.99 8.05 -187.84 -1.51 -29.50 16 13 C 0.19 10.72 6.53 40.36 0.26 10.98 16 14 C -0.43 -23.33 7.91 23.35 0.18 -23.14 16 15 H 0.11 5.62 4.77 -2.91 -0.01 5.61 16 16 C 0.02 1.11 5.50 85.33 0.47 1.58 16 17 N -0.74 -39.49 11.49 21.86 0.25 -39.23 16 18 Si 0.98 37.85 29.56 68.60 2.03 39.88 16 19 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 21 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 22 C -0.09 -3.90 9.60 22.31 0.21 -3.68 16 23 C -0.12 -4.22 9.86 22.10 0.22 -4.00 16 24 C 0.07 2.51 6.81 39.18 0.27 2.78 16 25 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.07 8.06 -2.39 -0.02 1.05 16 27 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 29 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 30 H 0.11 5.26 6.74 -2.91 -0.02 5.24 16 31 H 0.16 6.32 8.06 -2.91 -0.02 6.30 16 32 H 0.16 6.59 8.06 -2.91 -0.02 6.57 16 33 H 0.29 13.56 8.29 -92.71 -0.77 12.79 16 34 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.15 3.73 8.03 -2.91 -0.02 3.70 16 Total: -1.00 -73.22 304.02 4.63 -68.59 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 1.12 Total: 27.64 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 6.33 Total: -29.43 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.85 Total: -106.68 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -73.22 4.63 -68.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239938984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.723 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds