Wall clock time and date at job start Tue Mar 31 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36844 * 125.02959 * 2 1 4 4 C 1.34209 * 109.95066 * 180.02562 * 3 2 1 5 5 C 1.46542 * 106.95868 * 359.97438 * 4 3 2 6 6 C 1.39421 * 133.96393 * 180.28409 * 5 4 3 7 7 C 1.38880 * 119.40600 * 180.19249 * 6 5 4 8 8 C 1.48247 * 119.95367 * 179.77419 * 7 6 5 9 9 C 1.40077 * 119.98627 * 359.72194 * 8 7 6 10 10 N 1.32170 * 120.29035 * 180.02562 * 9 8 7 11 11 C 1.31893 * 120.28375 * 359.97438 * 10 9 8 12 12 C 1.40805 * 119.97961 * 0.02562 * 11 10 9 13 13 C 1.41317 * 120.14741 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99730 * 6.20864 * 13 12 11 15 15 C 1.40046 * 119.99916 * 186.22127 * 13 12 11 16 16 N 1.30733 * 120.00199 * 353.66389 * 15 13 12 17 17 Si 1.86807 * 119.99874 * 173.67012 * 15 13 12 18 18 H 1.48494 * 109.47180 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46942 * 299.99554 * 17 15 13 20 20 H 1.48501 * 109.47137 * 59.99312 * 17 15 13 21 21 N 1.32541 * 119.99036 * 179.97438 * 8 7 6 22 22 C 1.39968 * 120.09240 * 359.49346 * 7 6 5 23 23 C 1.36433 * 120.69740 * 0.25851 * 22 7 6 24 24 C 1.37607 * 125.04140 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46966 * 269.97397 * 1 2 3 26 26 H 1.08992 * 109.47206 * 29.97886 * 1 2 3 27 27 H 1.09005 * 109.46740 * 149.97621 * 1 2 3 28 28 H 1.07996 * 125.02468 * 359.97438 * 3 2 1 29 29 H 1.08006 * 126.52416 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.30229 * 359.96541 * 6 5 4 31 31 H 1.07993 * 119.85750 * 0.02562 * 9 8 7 32 32 H 1.08005 * 120.00984 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99707 * 180.02562 * 16 15 13 34 34 H 1.08009 * 119.65019 * 180.22748 * 22 7 6 35 35 H 1.07996 * 119.89705 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.1206 0.0000 4 6 3.5464 0.7714 -0.0006 5 6 3.5945 -0.6932 -0.0003 6 6 4.6292 -1.6277 0.0043 7 6 4.3244 -2.9826 -0.0011 8 6 5.4151 -3.9866 -0.0013 9 6 6.7519 -3.5681 -0.0020 10 7 7.7290 -4.4581 -0.0027 11 6 7.4539 -5.7480 -0.0023 12 6 6.1142 -6.1816 -0.0016 13 6 5.8153 -7.5628 -0.0007 14 1 6.6099 -8.2872 0.1008 15 6 4.4888 -7.9923 -0.1315 16 7 3.5158 -7.1191 -0.1299 17 14 4.1095 -9.8129 -0.3080 18 1 2.6418 -10.0033 -0.4288 19 1 4.7794 -10.3425 -1.5229 20 1 4.6059 -10.5402 0.8878 21 7 5.1250 -5.2799 -0.0060 22 6 2.9889 -3.4015 -0.0004 23 6 1.9732 -2.4906 0.0002 24 6 2.2551 -1.1266 -0.0005 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.8821 2.1357 -0.0004 29 1 4.3929 1.4422 -0.0011 30 1 5.6586 -1.3008 0.0083 31 1 6.9852 -2.5137 -0.0019 32 1 8.2558 -6.4715 -0.0024 33 1 2.5970 -7.4166 -0.2201 34 1 2.7600 -4.4571 -0.0009 35 1 0.9473 -2.8282 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239939833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:03 Heat of formation + Delta-G solvation = 103.570353 kcal Electronic energy + Delta-G solvation = -20180.495647 eV Core-core repulsion = 17143.825550 eV Total energy + Delta-G solvation = -3036.670096 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95746 -38.95710 -36.59922 -34.04015 -32.71176 -32.15532 -31.03940 -29.17766 -28.19332 -26.35248 -25.70299 -23.02987 -22.66172 -21.29531 -20.14151 -19.95013 -17.56391 -16.87786 -16.22351 -15.51578 -15.23619 -15.19999 -14.98152 -14.56406 -13.73062 -13.34689 -13.15186 -13.12933 -12.93785 -12.60473 -12.44308 -12.07717 -11.75194 -11.45592 -11.37511 -11.26109 -10.99007 -10.73331 -10.35575 -10.28021 -9.81476 -9.50391 -9.40608 -9.07299 -8.16611 -7.50486 -7.43089 -6.99207 -6.52886 -4.69099 1.48661 1.78371 2.71809 2.98502 2.98959 3.01553 3.03447 3.09136 3.20472 3.83961 4.40271 4.72972 4.74766 4.89900 5.04307 5.10808 5.29821 5.41122 5.48971 5.74521 5.82027 5.82680 5.89584 6.09061 6.19265 6.26973 6.41661 6.43886 6.67541 6.79930 6.98558 7.04257 7.08374 7.14218 7.21545 7.43211 7.50163 7.62286 7.70941 8.04068 8.41901 8.65817 9.25115 9.82949 10.12407 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.004791 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.718338 B = 5843.074195 C = 7118.791959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.493 5.493 3 C 0.034 3.966 4 C -0.199 4.199 5 C -0.118 4.118 6 C -0.061 4.061 7 C -0.043 4.043 8 C 0.144 3.856 9 C -0.108 4.108 10 N -0.430 5.430 11 C -0.066 4.066 12 C 0.210 3.790 13 C -0.415 4.415 14 H 0.090 0.910 15 C 0.069 3.931 16 N -0.713 5.713 17 Si 0.913 3.087 18 H -0.276 1.276 19 H -0.263 1.263 20 H -0.263 1.263 21 N -0.444 5.444 22 C -0.050 4.050 23 C -0.147 4.147 24 C 0.096 3.904 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.162 0.838 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.276 0.724 34 H 0.154 0.846 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.400 10.344 -0.105 13.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.178 5.178 3 C -0.090 4.090 4 C -0.224 4.224 5 C -0.122 4.122 6 C -0.080 4.080 7 C -0.046 4.046 8 C -0.003 4.003 9 C -0.267 4.267 10 N -0.142 5.142 11 C -0.235 4.235 12 C 0.083 3.917 13 C -0.447 4.447 14 H 0.108 0.892 15 C -0.158 4.158 16 N -0.334 5.334 17 Si 0.736 3.264 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.188 1.188 21 N -0.162 5.162 22 C -0.070 4.070 23 C -0.168 4.168 24 C -0.009 4.009 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.179 0.821 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.171 0.829 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.999 10.386 -0.122 13.743 hybrid contribution -0.324 -0.688 -0.084 0.765 sum -9.323 9.697 -0.205 13.453 Atomic orbital electron populations 1.21846 0.77859 1.03757 1.02554 1.43732 1.05477 1.04492 1.64104 1.21626 0.90590 0.90737 1.06076 1.21641 0.95740 0.93011 1.12051 1.19029 0.92013 0.93177 1.07983 1.20623 0.97902 0.90997 0.98526 1.18449 0.92597 0.91178 1.02339 1.20625 0.91392 0.92700 0.95582 1.22544 0.89464 0.98084 1.16610 1.67662 1.36364 1.02841 1.07284 1.23192 0.96416 0.91953 1.11960 1.19349 0.88154 0.94121 0.90028 1.19580 0.93467 0.90685 1.41005 0.89190 1.26099 0.96151 1.00015 0.93494 1.70038 1.00334 1.35385 1.27639 0.86294 0.78077 0.81910 0.80082 1.20129 1.18762 1.18780 1.69528 1.33179 0.98070 1.15418 1.21110 0.90877 1.00954 0.94042 1.19690 0.99421 0.88836 1.08850 1.18385 0.90032 0.88160 1.04362 0.91722 0.90411 0.90284 0.82099 0.83927 0.85699 0.85406 0.84954 0.91237 0.82852 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.72 11.02 59.85 0.66 1.38 16 2 N -0.49 -6.54 3.18 -121.76 -0.39 -6.92 16 3 C 0.03 0.41 11.28 -16.73 -0.19 0.22 16 4 C -0.20 -2.79 11.08 -37.66 -0.42 -3.20 16 5 C -0.12 -2.05 6.37 -105.15 -0.67 -2.72 16 6 C -0.06 -1.15 9.48 -38.90 -0.37 -1.52 16 7 C -0.04 -0.94 5.87 -104.90 -0.62 -1.55 16 8 C 0.14 3.58 6.74 -82.76 -0.56 3.03 16 9 C -0.11 -2.63 10.61 -16.72 -0.18 -2.80 16 10 N -0.43 -10.93 10.47 -12.05 -0.13 -11.06 16 11 C -0.07 -1.68 10.97 -16.56 -0.18 -1.86 16 12 C 0.21 5.69 6.54 -84.85 -0.56 5.14 16 13 C -0.42 -10.65 9.15 -37.73 -0.35 -11.00 16 14 H 0.09 2.12 7.86 -52.49 -0.41 1.70 16 15 C 0.07 1.66 5.49 -17.34 -0.10 1.56 16 16 N -0.71 -17.82 11.51 55.55 0.64 -17.18 16 17 Si 0.91 17.71 29.56 -169.99 -5.03 12.69 16 18 H -0.28 -5.24 7.11 56.52 0.40 -4.83 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 N -0.44 -12.03 7.14 -7.51 -0.05 -12.08 16 22 C -0.05 -1.03 9.50 -39.58 -0.38 -1.41 16 23 C -0.15 -2.57 9.87 -39.85 -0.39 -2.96 16 24 C 0.10 1.61 6.81 -83.93 -0.57 1.04 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.49 8.13 -51.93 -0.42 0.07 16 27 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 28 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.66 8.06 -52.48 -0.42 1.23 16 30 H 0.13 2.18 6.18 -52.48 -0.32 1.85 16 31 H 0.13 2.71 6.18 -52.49 -0.32 2.39 16 32 H 0.13 3.04 8.06 -52.48 -0.42 2.62 16 33 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 34 H 0.15 3.45 7.52 -52.48 -0.39 3.05 16 35 H 0.11 1.66 8.04 -52.49 -0.42 1.24 16 LS Contribution 306.55 15.07 4.62 4.62 Total: -1.00 -30.77 306.55 -8.73 -39.50 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -3.54 Total: 7.10 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -4.85 Total: -16.67 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: 0.07 Total: -47.24 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.77 -8.73 -39.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239939833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.071 kcal (2) G-P(sol) polarization free energy of solvation -30.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds