Wall clock time and date at job start Tue Mar 31 2020 01:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36844 * 125.02959 * 2 1 4 4 C 1.34209 * 109.95066 * 180.02562 * 3 2 1 5 5 C 1.46542 * 106.95868 * 359.97438 * 4 3 2 6 6 C 1.39421 * 133.96393 * 180.28409 * 5 4 3 7 7 C 1.38880 * 119.40600 * 180.19249 * 6 5 4 8 8 C 1.48247 * 119.95367 * 179.77419 * 7 6 5 9 9 C 1.40077 * 119.98627 * 359.72194 * 8 7 6 10 10 N 1.32170 * 120.29035 * 180.02562 * 9 8 7 11 11 C 1.31893 * 120.28375 * 359.97438 * 10 9 8 12 12 C 1.40805 * 119.97961 * 0.02562 * 11 10 9 13 13 C 1.41317 * 120.14741 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99730 * 6.20864 * 13 12 11 15 15 C 1.40046 * 119.99916 * 186.22127 * 13 12 11 16 16 N 1.30733 * 120.00199 * 353.66389 * 15 13 12 17 17 Si 1.86807 * 119.99874 * 173.67012 * 15 13 12 18 18 H 1.48494 * 109.47180 * 179.97438 * 17 15 13 19 19 H 1.48499 * 109.46942 * 299.99554 * 17 15 13 20 20 H 1.48501 * 109.47137 * 59.99312 * 17 15 13 21 21 N 1.32541 * 119.99036 * 179.97438 * 8 7 6 22 22 C 1.39968 * 120.09240 * 359.49346 * 7 6 5 23 23 C 1.36433 * 120.69740 * 0.25851 * 22 7 6 24 24 C 1.37607 * 125.04140 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.46966 * 269.97397 * 1 2 3 26 26 H 1.08992 * 109.47206 * 29.97886 * 1 2 3 27 27 H 1.09005 * 109.46740 * 149.97621 * 1 2 3 28 28 H 1.07996 * 125.02468 * 359.97438 * 3 2 1 29 29 H 1.08006 * 126.52416 * 179.97438 * 4 3 2 30 30 H 1.08003 * 120.30229 * 359.96541 * 6 5 4 31 31 H 1.07993 * 119.85750 * 0.02562 * 9 8 7 32 32 H 1.08005 * 120.00984 * 180.02562 * 11 10 9 33 33 H 0.96999 * 119.99707 * 180.02562 * 16 15 13 34 34 H 1.08009 * 119.65019 * 180.22748 * 22 7 6 35 35 H 1.07996 * 119.89705 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2505 1.1206 0.0000 4 6 3.5464 0.7714 -0.0006 5 6 3.5945 -0.6932 -0.0003 6 6 4.6292 -1.6277 0.0043 7 6 4.3244 -2.9826 -0.0011 8 6 5.4151 -3.9866 -0.0013 9 6 6.7519 -3.5681 -0.0020 10 7 7.7290 -4.4581 -0.0027 11 6 7.4539 -5.7480 -0.0023 12 6 6.1142 -6.1816 -0.0016 13 6 5.8153 -7.5628 -0.0007 14 1 6.6099 -8.2872 0.1008 15 6 4.4888 -7.9923 -0.1315 16 7 3.5158 -7.1191 -0.1299 17 14 4.1095 -9.8129 -0.3080 18 1 2.6418 -10.0033 -0.4288 19 1 4.7794 -10.3425 -1.5229 20 1 4.6059 -10.5402 0.8878 21 7 5.1250 -5.2799 -0.0060 22 6 2.9889 -3.4015 -0.0004 23 6 1.9732 -2.4906 0.0002 24 6 2.2551 -1.1266 -0.0005 25 1 -0.3633 -0.0005 1.0276 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.8821 2.1357 -0.0004 29 1 4.3929 1.4422 -0.0011 30 1 5.6586 -1.3008 0.0083 31 1 6.9852 -2.5137 -0.0019 32 1 8.2558 -6.4715 -0.0024 33 1 2.5970 -7.4166 -0.2201 34 1 2.7600 -4.4571 -0.0009 35 1 0.9473 -2.8282 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239939833.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:02 Heat of formation + Delta-G solvation = 86.232082 kcal Electronic energy + Delta-G solvation = -20181.247490 eV Core-core repulsion = 17143.825550 eV Total energy + Delta-G solvation = -3037.421940 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.14632 -40.81218 -38.00835 -35.92027 -34.06586 -33.70996 -32.76789 -30.64159 -29.56851 -27.93926 -27.02938 -24.62977 -24.35524 -22.87502 -21.66346 -21.06179 -19.42839 -18.15978 -17.68277 -17.18980 -16.92696 -16.70995 -16.16576 -16.10735 -15.00409 -14.97821 -14.88844 -14.57774 -13.98769 -13.70492 -13.56584 -13.38936 -13.24414 -13.12619 -12.98416 -12.84214 -12.42911 -12.32637 -11.99036 -11.71555 -11.64767 -11.46014 -10.99024 -10.54859 -9.91470 -9.33993 -8.84521 -8.39098 -8.37632 -6.65221 -0.04777 0.37412 0.95085 1.29846 1.41699 1.54181 1.57305 1.89388 1.99987 2.20076 2.73629 3.07877 3.57597 3.83560 3.87650 3.97754 4.03476 4.15960 4.21585 4.37757 4.50118 4.52444 4.61262 4.65402 4.75529 4.87070 4.90380 5.02130 5.07784 5.14080 5.21912 5.33170 5.53455 5.75766 5.82745 5.87903 5.88921 6.14728 6.31786 6.51101 6.51810 6.72649 7.30303 7.90290 8.32371 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021638 B = 0.004791 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.718338 B = 5843.074195 C = 7118.791959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.490 5.490 3 C 0.061 3.939 4 C -0.223 4.223 5 C -0.136 4.136 6 C -0.058 4.058 7 C -0.079 4.079 8 C 0.136 3.864 9 C -0.123 4.123 10 N -0.438 5.438 11 C -0.089 4.089 12 C 0.178 3.822 13 C -0.440 4.440 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.742 5.742 17 Si 0.995 3.005 18 H -0.267 1.267 19 H -0.258 1.258 20 H -0.256 1.256 21 N -0.472 5.472 22 C -0.076 4.076 23 C -0.136 4.136 24 C 0.086 3.914 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.079 0.921 28 H 0.214 0.786 29 H 0.164 0.836 30 H 0.133 0.867 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.285 0.715 34 H 0.125 0.875 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 12.300 -0.220 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.173 5.173 3 C -0.063 4.063 4 C -0.247 4.247 5 C -0.141 4.141 6 C -0.078 4.078 7 C -0.081 4.081 8 C -0.011 4.011 9 C -0.282 4.282 10 N -0.149 5.149 11 C -0.258 4.258 12 C 0.051 3.949 13 C -0.471 4.471 14 H 0.121 0.879 15 C -0.200 4.200 16 N -0.363 5.363 17 Si 0.814 3.186 18 H -0.191 1.191 19 H -0.183 1.183 20 H -0.180 1.180 21 N -0.190 5.190 22 C -0.096 4.096 23 C -0.156 4.156 24 C -0.022 4.022 25 H 0.097 0.903 26 H 0.131 0.869 27 H 0.098 0.902 28 H 0.230 0.770 29 H 0.182 0.818 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.167 0.833 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.249 12.366 -0.232 16.718 hybrid contribution 0.208 -1.037 -0.038 1.059 sum -11.041 11.328 -0.271 15.821 Atomic orbital electron populations 1.22223 0.74954 1.05620 1.04081 1.44137 1.07305 1.03544 1.62359 1.22449 0.89709 0.92237 1.01953 1.21975 0.97817 0.91203 1.13730 1.19449 0.91940 0.95101 1.07565 1.20691 0.98991 0.90237 0.97900 1.18443 0.92193 0.91667 1.05839 1.21200 0.92869 0.92831 0.94167 1.22957 0.89341 0.99134 1.16720 1.67666 1.36827 1.02993 1.07431 1.23415 0.96592 0.92493 1.13311 1.19850 0.88947 0.95193 0.90876 1.20041 0.95005 0.90636 1.41411 0.87909 1.27093 0.95291 1.05110 0.92545 1.70146 1.01019 1.37865 1.27230 0.85068 0.78174 0.75167 0.80190 1.19143 1.18264 1.17978 1.69548 1.33632 0.99040 1.16778 1.20865 0.91549 1.00229 0.96990 1.19761 0.99612 0.89107 1.07144 1.18460 0.90824 0.88805 1.04070 0.90315 0.86947 0.90208 0.76975 0.81828 0.84952 0.82877 0.83314 0.90443 0.85722 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.02 127.77 1.41 2.34 16 2 N -0.49 -11.04 3.18 -539.13 -1.71 -12.75 16 3 C 0.06 1.16 11.28 82.99 0.94 2.10 16 4 C -0.22 -5.52 11.08 23.52 0.26 -5.26 16 5 C -0.14 -4.58 6.37 -20.21 -0.13 -4.71 16 6 C -0.06 -2.26 9.48 22.71 0.22 -2.05 16 7 C -0.08 -3.60 5.87 -20.04 -0.12 -3.72 16 8 C 0.14 7.19 6.74 42.15 0.28 7.47 16 9 C -0.12 -6.21 10.61 85.09 0.90 -5.31 16 10 N -0.44 -23.13 10.47 -192.03 -2.01 -25.14 16 11 C -0.09 -4.79 10.97 85.31 0.94 -3.86 16 12 C 0.18 10.13 6.54 40.22 0.26 10.40 16 13 C -0.44 -23.38 9.15 23.47 0.21 -23.17 16 14 H 0.10 4.97 7.86 -2.91 -0.02 4.95 16 15 C 0.02 1.14 5.49 85.29 0.47 1.61 16 16 N -0.74 -38.54 11.51 21.84 0.25 -38.29 16 17 Si 0.99 36.51 29.56 68.60 2.03 38.54 16 18 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 20 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 21 N -0.47 -27.12 7.14 -177.67 -1.27 -28.38 16 22 C -0.08 -3.32 9.50 22.27 0.21 -3.11 16 23 C -0.14 -4.74 9.87 22.10 0.22 -4.52 16 24 C 0.09 2.73 6.81 39.11 0.27 3.00 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.11 0.75 8.13 -2.39 -0.02 0.73 16 27 H 0.08 1.07 8.07 -2.38 -0.02 1.05 16 28 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 30 H 0.13 4.71 6.18 -2.91 -0.02 4.69 16 31 H 0.15 6.69 6.18 -2.91 -0.02 6.67 16 32 H 0.15 7.14 8.06 -2.91 -0.02 7.12 16 33 H 0.28 13.25 8.29 -92.71 -0.77 12.48 16 34 H 0.12 6.07 7.52 -2.91 -0.02 6.05 16 35 H 0.14 3.92 8.04 -2.91 -0.02 3.89 16 Total: -1.00 -71.48 306.55 4.75 -66.74 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 1.12 Total: 28.06 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 6.34 Total: -28.78 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -4.74 Total: -104.56 kcal Atomic # 14 Polarization: 36.51 SS G_CDS: 2.03 Total: 38.54 kcal Total: -71.48 4.75 -66.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239939833.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.971 kcal (2) G-P(sol) polarization free energy of solvation -71.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds