Wall clock time and date at job start Tue Mar 31 2020 00:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31224 * 119.79447 * 2 1 4 4 C 1.33116 * 121.71169 * 180.02562 * 3 2 1 5 5 C 1.47705 * 119.46154 * 179.97438 * 4 3 2 6 6 C 1.40940 * 119.39841 * 179.72956 * 5 4 3 7 7 C 1.35213 * 121.66592 * 179.74663 * 6 5 4 8 8 C 1.41398 * 119.95316 * 0.52477 * 7 6 5 9 9 N 1.31943 * 134.37334 * 179.73759 * 8 7 6 10 10 N 1.39920 * 109.07249 * 180.02562 * 9 8 7 11 11 H 0.97002 * 125.00006 * 179.97438 * 10 9 8 12 12 C 1.33945 * 110.00090 * 0.02562 * 10 9 8 13 13 C 1.38570 * 107.81222 * 359.97438 * 12 10 9 14 14 C 1.38351 * 119.39915 * 0.02562 * 5 4 3 15 15 C 1.40048 * 121.07821 * 0.02562 * 4 3 2 16 16 C 1.36504 * 119.46070 * 359.97438 * 15 4 3 17 17 C 1.40976 * 119.79680 * 180.02562 * 2 1 3 18 18 C 1.40994 * 120.54456 * 359.96035 * 17 2 1 19 19 H 1.08000 * 119.99585 * 334.68159 * 18 17 2 20 20 C 1.39925 * 120.00019 * 154.67163 * 18 17 2 21 21 N 1.30852 * 120.00347 * 343.65879 * 20 18 17 22 22 Si 1.86804 * 119.99857 * 163.65154 * 20 18 17 23 23 H 1.48497 * 109.47028 * 90.00163 * 22 20 18 24 24 H 1.48498 * 109.47216 * 210.00714 * 22 20 18 25 25 H 1.48502 * 109.46806 * 330.00286 * 22 20 18 26 26 H 1.09005 * 109.47167 * 269.98010 * 1 2 3 27 27 H 1.08991 * 109.47390 * 29.97843 * 1 2 3 28 28 H 1.09004 * 109.47252 * 149.98104 * 1 2 3 29 29 H 1.08001 * 119.16641 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.02483 * 180.24750 * 7 6 5 31 31 H 1.07995 * 126.09964 * 180.02562 * 12 10 9 32 32 H 1.08004 * 120.34038 * 359.95068 * 14 5 4 33 33 H 1.07994 * 120.26914 * 180.02562 * 15 4 3 34 34 H 1.08001 * 120.78792 * 180.27239 * 16 15 4 35 35 H 0.96999 * 119.99654 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1388 0.0000 4 6 3.4895 1.1833 -0.0005 5 6 4.1725 2.4929 -0.0011 6 6 5.5812 2.5386 0.0042 7 6 6.2534 3.7117 -0.0011 8 6 5.5414 4.9334 -0.0011 9 7 5.8916 6.2055 -0.0011 10 7 4.7381 6.9973 -0.0004 11 1 4.7290 7.9673 0.0001 12 6 3.6480 6.2188 0.0006 13 6 4.0698 4.8989 0.0000 14 6 3.4179 3.6525 -0.0005 15 6 4.2521 0.0087 -0.0016 16 6 3.6209 -1.2016 -0.0016 17 6 2.2076 -1.2234 -0.0005 18 6 1.5099 -2.4486 -0.0003 19 1 0.5082 -2.4995 0.4003 20 6 2.1152 -3.5985 -0.5191 21 7 3.1724 -3.4935 -1.2830 22 14 1.4140 -5.2836 -0.1213 23 1 0.4045 -5.6541 -1.1454 24 1 2.5085 -6.2873 -0.1192 25 1 0.7717 -5.2490 1.2172 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 6.1377 1.6130 0.0081 30 1 7.3334 3.7157 -0.0009 31 1 2.6231 6.5591 0.0008 32 1 2.3390 3.6013 -0.0005 33 1 5.3309 0.0601 -0.0016 34 1 4.1879 -2.1208 0.0020 35 1 3.5922 -4.2907 -1.6423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240210713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:24 Heat of formation + Delta-G solvation = 109.407398 kcal Electronic energy + Delta-G solvation = -19935.910000 eV Core-core repulsion = 16899.493017 eV Total energy + Delta-G solvation = -3036.416983 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89817 -38.68942 -36.61890 -34.19516 -32.24062 -31.57388 -30.59062 -30.24318 -28.31039 -26.97770 -25.27120 -23.45897 -22.17340 -20.81631 -20.30630 -19.82212 -17.76823 -17.46479 -16.42962 -15.95501 -15.33509 -14.68383 -14.62784 -14.00035 -13.47259 -13.41047 -13.17135 -13.09000 -12.86024 -12.22243 -11.84391 -11.68118 -11.62659 -11.47163 -11.13743 -10.99508 -10.96563 -10.90773 -10.64098 -10.02210 -9.95084 -9.76051 -9.46040 -8.52263 -8.28189 -8.04730 -7.76438 -7.03585 -6.77128 -4.50163 0.90126 1.94670 2.60833 2.80984 2.87518 2.93379 2.95856 3.00223 3.21629 3.75252 4.22198 4.58592 4.66714 4.85397 5.31399 5.41504 5.57601 5.58810 5.82478 5.96457 5.99628 6.12845 6.32341 6.48028 6.55910 6.63413 6.72412 6.73804 6.84161 6.86198 6.94800 7.07551 7.24351 7.26820 7.29063 7.37447 7.69814 7.79613 7.86408 7.92079 8.33306 8.54452 8.64915 9.60490 9.91383 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.003755 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.349137 B = 7455.143632 C = 8088.179468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.007 3.993 3 N -0.450 5.450 4 C 0.010 3.990 5 C -0.022 4.022 6 C -0.058 4.058 7 C -0.120 4.120 8 C 0.098 3.902 9 N -0.320 5.320 10 N -0.435 5.435 11 H 0.438 0.562 12 C 0.061 3.939 13 C -0.186 4.186 14 C -0.057 4.057 15 C -0.131 4.131 16 C -0.139 4.139 17 C 0.072 3.928 18 C -0.433 4.433 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.779 5.779 22 Si 0.913 3.087 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.258 1.258 26 H 0.047 0.953 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.184 0.816 32 H 0.132 0.868 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.558 9.361 1.583 9.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.138 4.138 3 N -0.158 5.158 4 C -0.125 4.125 5 C -0.024 4.024 6 C -0.081 4.081 7 C -0.141 4.141 8 C -0.055 4.055 9 N -0.149 5.149 10 N -0.136 5.136 11 H 0.281 0.719 12 C -0.095 4.095 13 C -0.196 4.196 14 C -0.079 4.079 15 C -0.151 4.151 16 C -0.164 4.164 17 C 0.067 3.933 18 C -0.462 4.462 19 H 0.106 0.894 20 C -0.148 4.148 21 N -0.403 5.403 22 Si 0.737 3.263 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.181 1.181 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.201 0.799 32 H 0.149 0.851 33 H 0.119 0.881 34 H 0.143 0.857 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.303 10.804 1.430 10.976 hybrid contribution -0.366 -1.648 0.023 1.689 sum 0.937 9.156 1.453 9.318 Atomic orbital electron populations 1.20251 0.91113 1.01180 1.00312 1.20972 0.95077 0.88031 1.09713 1.66739 1.08626 1.30334 1.10094 1.18714 0.88994 0.90578 1.14214 1.18272 0.91517 0.91970 1.00684 1.20848 0.93873 0.97416 0.95952 1.19644 0.98768 0.88403 1.07329 1.20978 0.93256 0.92046 0.99260 1.77477 1.04083 1.01930 1.31440 1.46143 1.04071 1.09534 1.53817 0.71899 1.22650 0.93158 0.90811 1.02889 1.19685 0.93282 0.93230 1.13369 1.20542 0.99663 0.88390 0.99300 1.21312 0.98591 0.93495 1.01710 1.21285 0.94696 0.96638 1.03816 1.18403 0.92527 0.93154 0.89170 1.19633 1.01683 0.92036 1.32834 0.89409 1.26063 0.94222 1.01987 0.92555 1.69811 1.17116 1.32401 1.20925 0.86217 0.79564 0.80146 0.80421 1.19174 1.19882 1.18147 0.93381 0.93211 0.91531 0.85398 0.85898 0.79937 0.85051 0.88052 0.85685 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.57 36.01 0.34 -1.09 16 2 C 0.01 0.18 6.86 -81.81 -0.56 -0.39 16 3 N -0.45 -10.78 9.22 -5.41 -0.05 -10.83 16 4 C 0.01 0.22 6.73 -82.77 -0.56 -0.34 16 5 C -0.02 -0.45 5.87 -104.97 -0.62 -1.06 16 6 C -0.06 -1.02 9.26 -39.64 -0.37 -1.38 16 7 C -0.12 -1.98 10.06 -39.46 -0.40 -2.38 16 8 C 0.10 1.69 7.49 -82.98 -0.62 1.07 16 9 N -0.32 -5.09 12.69 33.30 0.42 -4.67 16 10 N -0.43 -5.08 7.18 30.90 0.22 -4.86 16 11 H 0.44 3.15 8.96 -182.73 -1.64 1.52 16 12 C 0.06 0.74 12.09 -16.51 -0.20 0.54 16 13 C -0.19 -3.08 6.32 -105.22 -0.66 -3.75 16 14 C -0.06 -1.07 9.63 -38.63 -0.37 -1.44 16 15 C -0.13 -2.99 9.37 -39.53 -0.37 -3.36 16 16 C -0.14 -3.46 8.72 -39.02 -0.34 -3.80 16 17 C 0.07 1.83 5.58 -106.63 -0.59 1.23 16 18 C -0.43 -10.54 8.13 -37.91 -0.31 -10.84 16 19 H 0.09 2.01 6.86 -52.49 -0.36 1.65 16 20 C 0.07 1.66 5.18 -17.34 -0.09 1.57 16 21 N -0.78 -18.69 10.95 55.55 0.61 -18.08 16 22 Si 0.91 17.15 29.59 -169.99 -5.03 12.12 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.31 6.76 -51.93 -0.35 0.96 16 29 H 0.13 2.03 6.01 -52.49 -0.32 1.72 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.13 2.45 7.45 -52.48 -0.39 2.06 16 33 H 0.10 2.01 6.05 -52.49 -0.32 1.69 16 34 H 0.13 3.13 6.27 -52.49 -0.33 2.80 16 35 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -29.74 300.86 -9.54 -39.28 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -4.53 Total: 7.93 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -5.71 Total: -25.43 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 1.20 Total: -38.44 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.12 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.74 -9.54 -39.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240210713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.685 kcal (2) G-P(sol) polarization free energy of solvation -29.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds