Wall clock time and date at job start Tue Mar 31 2020 00:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31224 * 119.79447 * 2 1 4 4 C 1.33116 * 121.71169 * 180.02562 * 3 2 1 5 5 C 1.47705 * 119.46154 * 179.97438 * 4 3 2 6 6 C 1.40940 * 119.39841 * 179.72956 * 5 4 3 7 7 C 1.35213 * 121.66592 * 179.74663 * 6 5 4 8 8 C 1.41398 * 119.95316 * 0.52477 * 7 6 5 9 9 N 1.31943 * 134.37334 * 179.73759 * 8 7 6 10 10 N 1.39920 * 109.07249 * 180.02562 * 9 8 7 11 11 H 0.97002 * 125.00006 * 179.97438 * 10 9 8 12 12 C 1.33945 * 110.00090 * 0.02562 * 10 9 8 13 13 C 1.38570 * 107.81222 * 359.97438 * 12 10 9 14 14 C 1.38351 * 119.39915 * 0.02562 * 5 4 3 15 15 C 1.40048 * 121.07821 * 0.02562 * 4 3 2 16 16 C 1.36504 * 119.46070 * 359.97438 * 15 4 3 17 17 C 1.40976 * 119.79680 * 180.02562 * 2 1 3 18 18 C 1.40994 * 120.54456 * 359.96035 * 17 2 1 19 19 H 1.08000 * 119.99585 * 334.68159 * 18 17 2 20 20 C 1.39925 * 120.00019 * 154.67163 * 18 17 2 21 21 N 1.30852 * 120.00347 * 343.65879 * 20 18 17 22 22 Si 1.86804 * 119.99857 * 163.65154 * 20 18 17 23 23 H 1.48497 * 109.47028 * 90.00163 * 22 20 18 24 24 H 1.48498 * 109.47216 * 210.00714 * 22 20 18 25 25 H 1.48502 * 109.46806 * 330.00286 * 22 20 18 26 26 H 1.09005 * 109.47167 * 269.98010 * 1 2 3 27 27 H 1.08991 * 109.47390 * 29.97843 * 1 2 3 28 28 H 1.09004 * 109.47252 * 149.98104 * 1 2 3 29 29 H 1.08001 * 119.16641 * 0.02562 * 6 5 4 30 30 H 1.08000 * 120.02483 * 180.24750 * 7 6 5 31 31 H 1.07995 * 126.09964 * 180.02562 * 12 10 9 32 32 H 1.08004 * 120.34038 * 359.95068 * 14 5 4 33 33 H 1.07994 * 120.26914 * 180.02562 * 15 4 3 34 34 H 1.08001 * 120.78792 * 180.27239 * 16 15 4 35 35 H 0.96999 * 119.99654 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1591 1.1388 0.0000 4 6 3.4895 1.1833 -0.0005 5 6 4.1725 2.4929 -0.0011 6 6 5.5812 2.5386 0.0042 7 6 6.2534 3.7117 -0.0011 8 6 5.5414 4.9334 -0.0011 9 7 5.8916 6.2055 -0.0011 10 7 4.7381 6.9973 -0.0004 11 1 4.7290 7.9673 0.0001 12 6 3.6480 6.2188 0.0006 13 6 4.0698 4.8989 0.0000 14 6 3.4179 3.6525 -0.0005 15 6 4.2521 0.0087 -0.0016 16 6 3.6209 -1.2016 -0.0016 17 6 2.2076 -1.2234 -0.0005 18 6 1.5099 -2.4486 -0.0003 19 1 0.5082 -2.4995 0.4003 20 6 2.1152 -3.5985 -0.5191 21 7 3.1724 -3.4935 -1.2830 22 14 1.4140 -5.2836 -0.1213 23 1 0.4045 -5.6541 -1.1454 24 1 2.5085 -6.2873 -0.1192 25 1 0.7717 -5.2490 1.2172 26 1 -0.3634 -0.0004 1.0277 27 1 -0.3634 0.8901 -0.5134 28 1 -0.3634 -0.8898 -0.5141 29 1 6.1377 1.6130 0.0081 30 1 7.3334 3.7157 -0.0009 31 1 2.6231 6.5591 0.0008 32 1 2.3390 3.6013 -0.0005 33 1 5.3309 0.0601 -0.0016 34 1 4.1879 -2.1208 0.0020 35 1 3.5922 -4.2907 -1.6423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240210713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:23 Heat of formation + Delta-G solvation = 92.266378 kcal Electronic energy + Delta-G solvation = -19936.653290 eV Core-core repulsion = 16899.493017 eV Total energy + Delta-G solvation = -3037.160273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07873 -40.40997 -37.99601 -35.90504 -33.77618 -33.08089 -32.23148 -31.52213 -29.69619 -28.68055 -26.82930 -24.87360 -23.70937 -22.42050 -21.73842 -21.21771 -19.25441 -18.85507 -17.79233 -17.48637 -16.87622 -16.38670 -15.78019 -15.51550 -14.90927 -14.87365 -14.79281 -14.62930 -14.17980 -13.72689 -13.39600 -13.33827 -13.27107 -12.99910 -12.64792 -12.57368 -12.42343 -12.34592 -12.14431 -11.57034 -11.29075 -11.20225 -11.09207 -10.13250 -9.86613 -9.81486 -9.32483 -8.72010 -8.25863 -6.30734 -0.31148 0.44669 1.06176 1.21633 1.41577 1.49825 1.55793 1.67476 1.92737 2.19073 2.66393 3.08949 3.38150 3.77813 3.80063 3.83171 4.26226 4.37938 4.41194 4.51913 4.61519 4.63298 4.74517 4.88185 4.99788 5.04011 5.08480 5.16785 5.29221 5.35488 5.46829 5.55775 5.57017 5.80591 5.85016 5.98885 6.09885 6.15016 6.35525 6.53336 6.66123 6.76411 6.85019 7.79113 8.23527 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039187 B = 0.003755 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.349137 B = 7455.143632 C = 8088.179468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.014 4.014 3 N -0.463 5.463 4 C 0.010 3.990 5 C -0.065 4.065 6 C -0.066 4.066 7 C -0.120 4.120 8 C 0.082 3.918 9 N -0.346 5.346 10 N -0.411 5.411 11 H 0.460 0.540 12 C 0.110 3.890 13 C -0.230 4.230 14 C -0.038 4.038 15 C -0.141 4.141 16 C -0.160 4.160 17 C 0.040 3.960 18 C -0.462 4.462 19 H 0.094 0.906 20 C 0.034 3.966 21 N -0.814 5.814 22 Si 0.986 3.014 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.255 1.255 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.144 0.856 31 H 0.236 0.764 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.059 11.571 1.828 11.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.159 4.159 3 N -0.172 5.172 4 C -0.125 4.125 5 C -0.067 4.067 6 C -0.088 4.088 7 C -0.141 4.141 8 C -0.070 4.070 9 N -0.176 5.176 10 N -0.113 5.113 11 H 0.309 0.691 12 C -0.049 4.049 13 C -0.240 4.240 14 C -0.059 4.059 15 C -0.161 4.161 16 C -0.185 4.185 17 C 0.036 3.964 18 C -0.491 4.491 19 H 0.112 0.888 20 C -0.183 4.183 21 N -0.439 5.439 22 Si 0.806 3.194 23 H -0.185 1.185 24 H -0.193 1.193 25 H -0.179 1.179 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.161 0.839 31 H 0.253 0.747 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.702 13.063 1.675 13.188 hybrid contribution -0.134 -1.892 -0.060 1.898 sum 0.568 11.171 1.614 11.301 Atomic orbital electron populations 1.20234 0.88778 1.01722 1.01351 1.21564 0.96928 0.87891 1.09469 1.66842 1.09137 1.30197 1.10999 1.19285 0.89012 0.92096 1.12135 1.18290 0.92712 0.91049 1.04695 1.20836 0.92936 0.98327 0.96745 1.19857 0.99819 0.88047 1.06416 1.21204 0.93805 0.92657 0.99377 1.77451 1.05805 1.01585 1.32723 1.46250 1.03137 1.10730 1.51197 0.69136 1.23411 0.95088 0.89005 0.97428 1.19900 0.93312 0.94284 1.16458 1.20584 0.99372 0.89112 0.96876 1.21574 0.99947 0.93058 1.01533 1.21335 0.95042 0.96928 1.05224 1.18753 0.93015 0.94279 0.90390 1.19860 1.02314 0.92656 1.34228 0.88835 1.26906 0.94327 1.05376 0.91720 1.69865 1.18448 1.33720 1.21853 0.85128 0.78866 0.75211 0.80170 1.18450 1.19303 1.17860 0.91974 0.92003 0.91501 0.84701 0.83864 0.74738 0.85519 0.85780 0.86820 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.58 9.57 71.24 0.68 -1.90 16 2 C -0.01 -0.72 6.86 43.32 0.30 -0.42 16 3 N -0.46 -22.71 9.22 -171.03 -1.58 -24.29 16 4 C 0.01 0.47 6.73 41.89 0.28 0.75 16 5 C -0.07 -2.64 5.87 -20.09 -0.12 -2.76 16 6 C -0.07 -2.31 9.26 22.23 0.21 -2.11 16 7 C -0.12 -3.86 10.06 22.35 0.22 -3.63 16 8 C 0.08 2.67 7.49 42.26 0.32 2.99 16 9 N -0.35 -10.00 12.69 -48.55 -0.62 -10.62 16 10 N -0.41 -7.76 7.18 -56.17 -0.40 -8.16 16 11 H 0.46 4.30 8.96 -213.43 -1.91 2.38 16 12 C 0.11 2.14 12.09 84.45 1.02 3.16 16 13 C -0.23 -7.05 6.32 -20.25 -0.13 -7.17 16 14 C -0.04 -1.38 9.63 22.89 0.22 -1.16 16 15 C -0.14 -6.73 9.37 22.30 0.21 -6.52 16 16 C -0.16 -8.36 8.72 22.63 0.20 -8.16 16 17 C 0.04 2.12 5.58 -21.17 -0.12 2.00 16 18 C -0.46 -23.23 8.13 23.35 0.19 -23.04 16 19 H 0.09 4.40 6.86 -2.91 -0.02 4.38 16 20 C 0.03 1.58 5.18 85.25 0.44 2.03 16 21 N -0.81 -40.45 10.95 21.82 0.24 -40.21 16 22 Si 0.99 35.50 29.59 68.60 2.03 37.53 16 23 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 24 H -0.27 -9.31 7.11 99.48 0.71 -8.61 16 25 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 26 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.07 2.67 6.76 -2.39 -0.02 2.66 16 29 H 0.14 4.36 6.01 -2.91 -0.02 4.34 16 30 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.24 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.13 4.62 7.45 -2.91 -0.02 4.60 16 33 H 0.12 5.11 6.05 -2.91 -0.02 5.10 16 34 H 0.11 6.05 6.27 -2.91 -0.02 6.03 16 35 H 0.29 13.07 8.30 -92.71 -0.77 12.30 16 Total: -1.00 -67.47 300.86 2.84 -64.63 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.76 Total: 27.06 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 3.92 Total: -45.94 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -2.36 Total: -83.28 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Total: -67.47 2.84 -64.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240210713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.899 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds