Wall clock time and date at job start Tue Mar 31 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38928 * 119.24049 * 2 1 4 4 C 1.36833 * 119.82813 * 179.72165 * 3 2 1 5 5 C 1.41138 * 118.40550 * 0.53599 * 4 3 2 6 6 C 1.40805 * 120.72568 * 179.70486 * 5 4 3 7 7 H 1.08003 * 119.99979 * 151.12310 * 6 5 4 8 8 C 1.39973 * 119.99945 * 331.12847 * 6 5 4 9 9 N 1.30827 * 120.00424 * 348.77560 * 8 6 5 10 10 Si 1.86811 * 119.99960 * 168.77723 * 8 6 5 11 11 H 1.48499 * 109.46661 * 59.99520 * 10 8 6 12 12 H 1.48498 * 109.47034 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46898 * 299.99771 * 10 8 6 14 14 C 1.41965 * 118.54979 * 359.73525 * 5 4 3 15 15 C 1.47545 * 120.00345 * 180.02562 * 14 5 4 16 16 C 1.40996 * 119.40700 * 316.05306 * 15 14 5 17 17 C 1.35192 * 121.65766 * 179.97438 * 16 15 14 18 18 C 1.41412 * 119.96476 * 0.02562 * 17 16 15 19 19 N 1.31938 * 134.36156 * 180.02562 * 18 17 16 20 20 N 1.39919 * 109.08017 * 180.02562 * 19 18 17 21 21 H 0.97002 * 125.00449 * 179.97438 * 20 19 18 22 22 C 1.33946 * 110.00234 * 0.02562 * 20 19 18 23 23 C 1.38586 * 107.80835 * 359.97438 * 22 20 19 24 24 C 1.38453 * 119.40433 * 135.78954 * 15 14 5 25 25 N 1.31682 * 119.23971 * 180.27303 * 2 1 3 26 26 H 1.09000 * 109.47444 * 269.72513 * 1 2 3 27 27 H 1.09010 * 109.46652 * 149.72973 * 1 2 3 28 28 H 1.08992 * 109.47403 * 29.73075 * 1 2 3 29 29 H 1.08002 * 120.08335 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.79778 * 180.26609 * 4 3 2 31 31 H 0.97001 * 120.00323 * 180.02562 * 9 8 6 32 32 H 1.07991 * 119.16701 * 0.02562 * 16 15 14 33 33 H 1.08001 * 120.02098 * 180.02562 * 17 16 15 34 34 H 1.08003 * 126.10379 * 180.02562 * 22 20 19 35 35 H 1.07999 * 120.34396 * 359.97083 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2123 0.0000 4 6 3.5538 1.2263 0.0058 5 6 4.2380 -0.0082 0.0000 6 6 5.6454 -0.0507 -0.0007 7 1 6.1606 -0.8877 0.4470 8 6 6.3768 0.9918 -0.5816 9 7 5.7680 1.8901 -1.3124 10 14 8.2223 1.1005 -0.3135 11 1 8.8716 -0.1283 -0.8366 12 1 8.7576 2.2860 -1.0299 13 1 8.5048 1.2299 1.1386 14 6 3.4761 -1.2061 -0.0058 15 6 4.1584 -2.5143 -0.0113 16 6 5.2630 -2.7154 -0.8641 17 6 5.9219 -3.8952 -0.9056 18 6 5.5063 -4.9657 -0.0803 19 7 5.9259 -6.2023 0.1076 20 7 5.1161 -6.8192 1.0675 21 1 5.2203 -7.7315 1.3802 22 6 4.1751 -5.9650 1.4905 23 6 4.3529 -4.7691 0.8131 24 6 3.7057 -3.5206 0.8250 25 7 2.1502 -1.1490 -0.0055 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 -0.8877 -0.5181 28 1 -0.3634 0.8923 -0.5096 29 1 1.6346 2.1411 -0.0004 30 1 4.0972 2.1596 0.0102 31 1 6.2749 2.6124 -1.7152 32 1 5.5915 -1.9064 -1.4996 33 1 6.7652 -4.0201 -1.5687 34 1 3.4140 -6.1709 2.2286 35 1 2.8611 -3.3501 1.4762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240210781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:26 Heat of formation + Delta-G solvation = 109.463139 kcal Electronic energy + Delta-G solvation = -20472.422415 eV Core-core repulsion = 17436.007849 eV Total energy + Delta-G solvation = -3036.414566 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.74247 -38.68907 -36.37211 -34.30892 -32.17848 -31.18479 -30.62886 -30.03361 -28.09436 -27.63788 -24.51262 -23.57667 -22.01353 -20.83395 -20.10344 -19.96460 -17.67527 -17.39447 -16.31397 -15.57562 -15.41802 -14.53606 -14.43076 -14.01182 -13.65408 -13.37905 -13.07337 -12.99636 -12.60857 -12.23319 -11.95518 -11.63104 -11.48088 -11.38331 -11.08096 -10.97186 -10.95077 -10.85932 -10.58228 -9.92499 -9.80032 -9.73248 -9.40317 -8.44338 -8.07439 -8.06515 -7.61782 -6.97155 -6.72227 -4.50307 1.09144 2.21149 2.63640 2.85907 2.99940 3.01472 3.03716 3.08351 3.17492 3.81896 4.46377 4.56201 4.75901 4.98800 5.40614 5.54535 5.59162 5.74928 6.02645 6.05221 6.12451 6.21687 6.30229 6.39381 6.46207 6.53022 6.71902 6.82278 6.91577 6.98739 7.03832 7.07921 7.28277 7.39034 7.48340 7.51119 7.68812 7.85001 7.92052 8.02481 8.37979 8.59861 8.66737 9.58663 10.00032 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.007224 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.814548 B = 3875.216782 C = 5794.625097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 C -0.146 4.146 4 C -0.124 4.124 5 C 0.082 3.918 6 C -0.439 4.439 7 H 0.089 0.911 8 C 0.074 3.926 9 N -0.790 5.790 10 Si 0.909 3.091 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.262 1.262 14 C 0.024 3.976 15 C -0.005 4.005 16 C -0.028 4.028 17 C -0.137 4.137 18 C 0.107 3.893 19 N -0.323 5.323 20 N -0.438 5.438 21 H 0.436 0.564 22 C 0.059 3.941 23 C -0.189 4.189 24 C -0.059 4.059 25 N -0.451 5.451 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.285 0.715 32 H 0.141 0.859 33 H 0.121 0.879 34 H 0.181 0.819 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 -7.243 3.642 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.166 4.166 4 C -0.150 4.150 5 C 0.078 3.922 6 C -0.469 4.469 7 H 0.107 0.893 8 C -0.145 4.145 9 N -0.415 5.415 10 Si 0.733 3.267 11 H -0.184 1.184 12 H -0.202 1.202 13 H -0.187 1.187 14 C -0.114 4.114 15 C -0.007 4.007 16 C -0.051 4.051 17 C -0.158 4.158 18 C -0.046 4.046 19 N -0.152 5.152 20 N -0.139 5.139 21 H 0.279 0.721 22 C -0.096 4.096 23 C -0.199 4.199 24 C -0.080 4.080 25 N -0.159 5.159 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.145 0.855 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.139 0.861 34 H 0.198 0.802 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.947 -8.667 3.116 9.258 hybrid contribution 0.729 1.159 0.516 1.463 sum -0.218 -7.508 3.632 8.343 Atomic orbital electron populations 1.20286 0.91613 1.00900 1.00377 1.20265 0.94814 0.88598 1.11126 1.21252 0.95478 0.97086 1.02780 1.21421 0.92555 0.98927 1.02117 1.18344 0.94085 0.90815 0.89001 1.19543 0.91055 1.04827 1.31424 0.89337 1.25975 1.01562 0.94131 0.92841 1.69755 1.38808 1.10995 1.21923 0.86313 0.81465 0.78990 0.79923 1.18413 1.20195 1.18658 1.19458 0.88237 0.91308 1.12422 1.18078 0.94852 0.91985 0.95824 1.21069 0.92486 0.95721 0.95801 1.19672 1.03032 0.91044 1.02039 1.21025 0.94591 0.92125 0.96872 1.77477 1.17545 1.08761 1.11441 1.46118 1.22944 1.13764 1.31084 0.72068 1.22598 0.95506 0.90615 1.00913 1.19617 1.01504 0.95487 1.03295 1.20528 0.98648 0.89959 0.98879 1.66904 1.09626 1.29154 1.10238 0.93214 0.92600 0.92948 0.88424 0.85502 0.90401 0.84144 0.86063 0.80184 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.00 0.37 -0.95 16 2 C -0.01 -0.14 6.79 -82.40 -0.56 -0.70 16 3 C -0.15 -3.28 9.64 -39.83 -0.38 -3.67 16 4 C -0.12 -3.06 8.71 -38.99 -0.34 -3.40 16 5 C 0.08 2.07 5.53 -106.40 -0.59 1.48 16 6 C -0.44 -10.70 6.64 -37.96 -0.25 -10.95 16 7 H 0.09 2.12 6.50 -52.48 -0.34 1.78 16 8 C 0.07 1.71 5.26 -17.33 -0.09 1.62 16 9 N -0.79 -18.92 10.91 55.55 0.61 -18.31 16 10 Si 0.91 17.68 29.58 -169.99 -5.03 12.65 16 11 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 12 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 13 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 14 C 0.02 0.58 6.38 -82.26 -0.53 0.05 16 15 C -0.01 -0.11 5.25 -104.98 -0.55 -0.66 16 16 C -0.03 -0.58 7.67 -39.62 -0.30 -0.88 16 17 C -0.14 -2.61 10.05 -39.46 -0.40 -3.01 16 18 C 0.11 2.04 7.49 -82.97 -0.62 1.42 16 19 N -0.32 -5.61 12.69 33.31 0.42 -5.19 16 20 N -0.44 -5.64 7.18 30.90 0.22 -5.41 16 21 H 0.44 3.61 8.96 -182.73 -1.64 1.97 16 22 C 0.06 0.79 12.09 -16.50 -0.20 0.59 16 23 C -0.19 -3.38 6.32 -105.22 -0.66 -4.04 16 24 C -0.06 -1.16 9.69 -38.60 -0.37 -1.53 16 25 N -0.45 -10.81 10.03 -5.47 -0.05 -10.86 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 30 H 0.13 3.16 6.35 -52.49 -0.33 2.83 16 31 H 0.28 6.25 8.30 -40.82 -0.34 5.91 16 32 H 0.14 3.02 6.67 -52.49 -0.35 2.67 16 33 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 35 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 LS Contribution 302.73 15.07 4.56 4.56 Total: -1.00 -29.27 302.73 -9.51 -38.78 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.75 Total: 8.43 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -5.49 Total: -24.64 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 1.20 Total: -39.78 kcal Atomic # 14 Polarization: 17.68 SS G_CDS: -5.03 Total: 12.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.27 -9.51 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240210781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.246 kcal (2) G-P(sol) polarization free energy of solvation -29.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds