Wall clock time and date at job start Tue Mar 31 2020 00:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38928 * 119.24049 * 2 1 4 4 C 1.36833 * 119.82813 * 179.72165 * 3 2 1 5 5 C 1.41138 * 118.40550 * 0.53599 * 4 3 2 6 6 C 1.40805 * 120.72568 * 179.70486 * 5 4 3 7 7 H 1.08003 * 119.99979 * 151.12310 * 6 5 4 8 8 C 1.39973 * 119.99945 * 331.12847 * 6 5 4 9 9 N 1.30827 * 120.00424 * 348.77560 * 8 6 5 10 10 Si 1.86811 * 119.99960 * 168.77723 * 8 6 5 11 11 H 1.48499 * 109.46661 * 59.99520 * 10 8 6 12 12 H 1.48498 * 109.47034 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46898 * 299.99771 * 10 8 6 14 14 C 1.41965 * 118.54979 * 359.73525 * 5 4 3 15 15 C 1.47545 * 120.00345 * 180.02562 * 14 5 4 16 16 C 1.40996 * 119.40700 * 316.05306 * 15 14 5 17 17 C 1.35192 * 121.65766 * 179.97438 * 16 15 14 18 18 C 1.41412 * 119.96476 * 0.02562 * 17 16 15 19 19 N 1.31938 * 134.36156 * 180.02562 * 18 17 16 20 20 N 1.39919 * 109.08017 * 180.02562 * 19 18 17 21 21 H 0.97002 * 125.00449 * 179.97438 * 20 19 18 22 22 C 1.33946 * 110.00234 * 0.02562 * 20 19 18 23 23 C 1.38586 * 107.80835 * 359.97438 * 22 20 19 24 24 C 1.38453 * 119.40433 * 135.78954 * 15 14 5 25 25 N 1.31682 * 119.23971 * 180.27303 * 2 1 3 26 26 H 1.09000 * 109.47444 * 269.72513 * 1 2 3 27 27 H 1.09010 * 109.46652 * 149.72973 * 1 2 3 28 28 H 1.08992 * 109.47403 * 29.73075 * 1 2 3 29 29 H 1.08002 * 120.08335 * 359.97438 * 3 2 1 30 30 H 1.08000 * 120.79778 * 180.26609 * 4 3 2 31 31 H 0.97001 * 120.00323 * 180.02562 * 9 8 6 32 32 H 1.07991 * 119.16701 * 0.02562 * 16 15 14 33 33 H 1.08001 * 120.02098 * 180.02562 * 17 16 15 34 34 H 1.08003 * 126.10379 * 180.02562 * 22 20 19 35 35 H 1.07999 * 120.34396 * 359.97083 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2123 0.0000 4 6 3.5538 1.2263 0.0058 5 6 4.2380 -0.0082 0.0000 6 6 5.6454 -0.0507 -0.0007 7 1 6.1606 -0.8877 0.4470 8 6 6.3768 0.9918 -0.5816 9 7 5.7680 1.8901 -1.3124 10 14 8.2223 1.1005 -0.3135 11 1 8.8716 -0.1283 -0.8366 12 1 8.7576 2.2860 -1.0299 13 1 8.5048 1.2299 1.1386 14 6 3.4761 -1.2061 -0.0058 15 6 4.1584 -2.5143 -0.0113 16 6 5.2630 -2.7154 -0.8641 17 6 5.9219 -3.8952 -0.9056 18 6 5.5063 -4.9657 -0.0803 19 7 5.9259 -6.2023 0.1076 20 7 5.1161 -6.8192 1.0675 21 1 5.2203 -7.7315 1.3802 22 6 4.1751 -5.9650 1.4905 23 6 4.3529 -4.7691 0.8131 24 6 3.7057 -3.5206 0.8250 25 7 2.1502 -1.1490 -0.0055 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 -0.8877 -0.5181 28 1 -0.3634 0.8923 -0.5096 29 1 1.6346 2.1411 -0.0004 30 1 4.0972 2.1596 0.0102 31 1 6.2749 2.6124 -1.7152 32 1 5.5915 -1.9064 -1.4996 33 1 6.7652 -4.0201 -1.5687 34 1 3.4140 -6.1709 2.2286 35 1 2.8611 -3.3501 1.4762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240210781.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:25 Heat of formation + Delta-G solvation = 92.410400 kcal Electronic energy + Delta-G solvation = -20473.161877 eV Core-core repulsion = 17436.007849 eV Total energy + Delta-G solvation = -3037.154028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04231 -40.41215 -37.85472 -36.05809 -33.69595 -32.79885 -32.26225 -31.43268 -29.60949 -29.22435 -26.12917 -25.07249 -23.59977 -22.53678 -21.63753 -21.34717 -19.19273 -18.88650 -17.74329 -17.29798 -16.95103 -16.18814 -15.72373 -15.66737 -15.19053 -14.87647 -14.58820 -14.52587 -14.11074 -13.79628 -13.51706 -13.25151 -13.10169 -12.92152 -12.67987 -12.58792 -12.43248 -12.30870 -12.14819 -11.60276 -11.18577 -11.16521 -11.12836 -10.16281 -9.87287 -9.57682 -9.31075 -8.67307 -8.24122 -6.31825 -0.24223 0.57698 0.97541 1.28273 1.39457 1.49367 1.53105 1.61524 1.96622 2.19459 2.75318 3.00116 3.42483 3.69765 3.84281 3.93572 4.31977 4.41924 4.44926 4.58173 4.65495 4.69897 4.74727 4.85393 4.99374 5.04216 5.08051 5.23805 5.29097 5.35547 5.41361 5.55986 5.65376 5.84351 5.90826 6.02620 6.12105 6.16774 6.39889 6.57279 6.70585 6.80308 6.87319 7.79263 8.28790 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.007224 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.814548 B = 3875.216782 C = 5794.625097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.015 4.015 3 C -0.152 4.152 4 C -0.147 4.147 5 C 0.051 3.949 6 C -0.458 4.458 7 H 0.082 0.918 8 C 0.040 3.960 9 N -0.821 5.821 10 Si 0.972 3.028 11 H -0.258 1.258 12 H -0.266 1.266 13 H -0.262 1.262 14 C 0.018 3.982 15 C -0.050 4.050 16 C -0.039 4.039 17 C -0.138 4.138 18 C 0.089 3.911 19 N -0.349 5.349 20 N -0.412 5.412 21 H 0.460 0.540 22 C 0.113 3.887 23 C -0.231 4.231 24 C -0.035 4.035 25 N -0.468 5.468 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.291 0.709 32 H 0.119 0.881 33 H 0.133 0.867 34 H 0.239 0.761 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.146 -9.576 5.146 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.157 4.157 3 C -0.172 4.172 4 C -0.173 4.173 5 C 0.046 3.954 6 C -0.487 4.487 7 H 0.100 0.900 8 C -0.176 4.176 9 N -0.447 5.447 10 Si 0.793 3.207 11 H -0.182 1.182 12 H -0.191 1.191 13 H -0.186 1.186 14 C -0.120 4.120 15 C -0.053 4.053 16 C -0.062 4.062 17 C -0.159 4.159 18 C -0.064 4.064 19 N -0.179 5.179 20 N -0.114 5.114 21 H 0.309 0.691 22 C -0.046 4.046 23 C -0.241 4.241 24 C -0.057 4.057 25 N -0.177 5.177 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.150 0.850 34 H 0.255 0.745 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.676 -11.034 4.613 12.077 hybrid contribution 0.815 1.610 0.161 1.812 sum -0.861 -9.425 4.774 10.600 Atomic orbital electron populations 1.20341 0.88082 1.02191 1.01986 1.21092 0.97243 0.88115 1.09204 1.21551 0.94900 0.98588 1.02196 1.21461 0.93690 0.98439 1.03704 1.18684 0.94940 0.91565 0.90175 1.19578 0.91145 1.05464 1.32522 0.90018 1.26668 1.05409 0.93430 0.92115 1.69803 1.40413 1.11691 1.22776 0.85377 0.76455 0.79182 0.79694 1.18232 1.19063 1.18600 1.19877 0.88604 0.92270 1.11269 1.18089 0.96499 0.92069 0.98622 1.20805 0.93217 0.95931 0.96272 1.19749 1.03004 0.90850 1.02315 1.21088 0.95361 0.92608 0.97293 1.77448 1.18954 1.08215 1.13263 1.46227 1.21407 1.14736 1.29019 0.69144 1.23404 0.94441 0.88100 0.98636 1.19850 1.02202 0.96622 1.05390 1.20585 0.97772 0.90131 0.97165 1.67035 1.09525 1.29895 1.11231 0.91296 0.92272 0.90702 0.85736 0.86700 0.89850 0.86341 0.84950 0.74453 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.15 71.23 0.72 -1.57 16 2 C -0.02 -0.68 6.79 42.75 0.29 -0.39 16 3 C -0.15 -6.97 9.64 22.11 0.21 -6.76 16 4 C -0.15 -7.58 8.71 22.65 0.20 -7.38 16 5 C 0.05 2.70 5.53 -21.02 -0.12 2.58 16 6 C -0.46 -23.62 6.64 23.32 0.15 -23.47 16 7 H 0.08 4.18 6.50 -2.91 -0.02 4.16 16 8 C 0.04 1.91 5.26 85.26 0.45 2.36 16 9 N -0.82 -41.14 10.91 21.83 0.24 -40.91 16 10 Si 0.97 37.37 29.58 68.60 2.03 39.40 16 11 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 12 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 13 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 14 C 0.02 0.89 6.38 42.39 0.27 1.17 16 15 C -0.05 -2.30 5.25 -20.10 -0.11 -2.41 16 16 C -0.04 -1.73 7.67 22.24 0.17 -1.56 16 17 C -0.14 -5.41 10.05 22.35 0.22 -5.19 16 18 C 0.09 3.28 7.49 42.27 0.32 3.60 16 19 N -0.35 -11.27 12.69 -48.54 -0.62 -11.88 16 20 N -0.41 -8.68 7.18 -56.15 -0.40 -9.08 16 21 H 0.46 5.13 8.96 -213.43 -1.91 3.22 16 22 C 0.11 2.41 12.09 84.45 1.02 3.43 16 23 C -0.23 -7.73 6.32 -20.25 -0.13 -7.86 16 24 C -0.04 -1.37 9.69 22.91 0.22 -1.15 16 25 N -0.47 -22.80 10.03 -171.22 -1.72 -24.52 16 26 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 29 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 30 H 0.12 6.06 6.35 -2.91 -0.02 6.04 16 31 H 0.29 13.23 8.30 -92.71 -0.77 12.46 16 32 H 0.12 5.57 6.67 -2.92 -0.02 5.55 16 33 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.24 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.12 4.61 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -67.64 302.73 2.66 -64.98 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: -0.77 Total: 26.60 kcal Atomic # 6 Polarization: -48.49 SS G_CDS: 3.90 Total: -44.59 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -2.50 Total: -86.39 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.40 kcal Total: -67.64 2.66 -64.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240210781.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.390 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds