Wall clock time and date at job start Tue Mar 31 2020 01:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40018 * 125.97631 * 2 1 4 4 C 1.30211 * 109.78926 * 179.97438 * 3 2 1 5 5 C 1.41436 * 108.73596 * 359.97438 * 4 3 2 6 6 C 1.40363 * 133.36356 * 179.97438 * 5 4 3 7 7 C 1.35976 * 120.05885 * 179.75766 * 6 5 4 8 8 C 1.40394 * 120.53109 * 0.52439 * 7 6 5 9 9 C 1.47673 * 119.87110 * 179.73293 * 8 7 6 10 10 N 1.32646 * 119.99830 * 135.99039 * 9 8 7 11 11 C 1.31716 * 121.71334 * 180.02562 * 10 9 8 12 12 C 1.38907 * 121.51370 * 359.97438 * 11 10 9 13 13 C 1.36855 * 119.81288 * 0.02562 * 12 11 10 14 14 C 1.41133 * 118.40238 * 359.97438 * 13 12 11 15 15 C 1.40831 * 120.72534 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00549 * 152.84410 * 15 14 13 17 17 C 1.40062 * 120.00324 * 332.84734 * 15 14 13 18 18 N 1.30785 * 119.99546 * 345.56847 * 17 15 14 19 19 Si 1.86798 * 120.00325 * 165.56396 * 17 15 14 20 20 H 1.48495 * 109.46783 * 60.00566 * 19 17 15 21 21 H 1.48504 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47135 * 300.00242 * 19 17 15 23 23 C 1.39191 * 120.25362 * 359.45921 * 8 7 6 24 24 C 1.37277 * 125.97789 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47429 * 270.03007 * 1 2 3 26 26 H 1.09008 * 109.47336 * 30.02726 * 1 2 3 27 27 H 1.09003 * 109.47769 * 150.02571 * 1 2 3 28 28 H 1.08007 * 125.63197 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.97217 * 0.02686 * 6 5 4 30 30 H 1.07998 * 119.73661 * 180.25674 * 7 6 5 31 31 H 1.07994 * 119.23877 * 180.02562 * 11 10 9 32 32 H 1.07999 * 120.08771 * 180.27514 * 12 11 10 33 33 H 1.07999 * 120.79691 * 180.02562 * 13 12 11 34 34 H 0.96999 * 120.00234 * 179.97438 * 18 17 15 35 35 H 1.08001 * 120.19634 * 180.29841 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2875 1.1331 0.0000 4 6 3.5379 0.7701 0.0005 5 6 3.6008 -0.6428 0.0015 6 6 4.6632 -1.5603 0.0020 7 6 4.4094 -2.8961 0.0080 8 6 3.0883 -3.3712 0.0027 9 6 2.8294 -4.8251 0.0033 10 7 1.8962 -5.3322 0.7980 11 6 1.6378 -6.6234 0.8261 12 6 2.3307 -7.5203 0.0230 13 6 3.3070 -7.0643 -0.8207 14 6 3.5792 -5.6797 -0.8463 15 6 4.5731 -5.1574 -1.6964 16 1 4.5012 -4.1394 -2.0497 17 6 5.6550 -5.9582 -2.0837 18 7 5.9012 -7.0756 -1.4503 19 14 6.7460 -5.4303 -3.5052 20 1 7.3654 -4.1174 -3.1926 21 1 7.8114 -6.4436 -3.7142 22 1 5.9283 -5.3108 -4.7390 23 6 2.0215 -2.4771 0.0026 24 6 2.2714 -1.1109 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5143 27 1 -0.3635 -0.8902 -0.5134 28 1 4.3869 1.4378 0.0003 29 1 5.6830 -1.2049 0.0019 30 1 5.2307 -3.5974 0.0125 31 1 0.8689 -6.9932 1.4883 32 1 2.0969 -8.5740 0.0615 33 1 3.8553 -7.7475 -1.4523 34 1 6.6502 -7.6304 -1.7187 35 1 1.0056 -2.8435 0.0034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240305537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:54 Heat of formation + Delta-G solvation = 113.117527 kcal Electronic energy + Delta-G solvation = -20534.324665 eV Core-core repulsion = 17498.068565 eV Total energy + Delta-G solvation = -3036.256100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = -0.12 seconds Orbital eigenvalues (eV) -40.88479 -38.62970 -36.34658 -34.26280 -33.24618 -31.20270 -30.71290 -29.75914 -28.20392 -26.33612 -25.63994 -23.19939 -21.82685 -21.33852 -20.45982 -19.99516 -17.50791 -16.71754 -16.39324 -15.59890 -15.15746 -15.09163 -14.57354 -14.06260 -13.97917 -13.70814 -13.25300 -12.79615 -12.74695 -12.42631 -12.32072 -12.17050 -11.63390 -11.51274 -11.33197 -11.11844 -10.96624 -10.69307 -10.47518 -10.41153 -9.89464 -9.61782 -9.49695 -8.54729 -8.16021 -8.07462 -7.47659 -7.29496 -6.98342 -4.61212 1.33654 2.15764 2.50659 2.74021 2.79347 2.94597 2.97713 3.08621 3.14968 3.74528 4.41272 4.50062 4.75075 5.11908 5.25039 5.34054 5.39910 5.53813 5.55609 5.64829 5.90933 5.92105 6.14186 6.20623 6.24447 6.46586 6.56972 6.66471 6.76649 6.88899 6.94771 6.99863 7.19352 7.35334 7.39500 7.53779 7.63551 7.76723 7.81469 8.00917 8.28335 8.49496 8.57116 9.48492 9.88736 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.006290 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.867887 B = 4450.665247 C = 5791.846911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.415 5.415 3 N -0.277 5.277 4 C 0.069 3.931 5 C -0.196 4.196 6 C -0.060 4.060 7 C -0.122 4.122 8 C 0.082 3.918 9 C 0.002 3.998 10 N -0.449 5.449 11 C -0.033 4.033 12 C -0.147 4.147 13 C -0.128 4.128 14 C 0.088 3.912 15 C -0.436 4.436 16 H 0.091 0.909 17 C 0.075 3.925 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.261 1.261 23 C -0.145 4.145 24 C 0.128 3.872 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.185 0.815 29 H 0.121 0.879 30 H 0.139 0.861 31 H 0.121 0.879 32 H 0.099 0.901 33 H 0.127 0.873 34 H 0.287 0.713 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.940 6.625 -0.341 6.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.204 5.204 3 N -0.091 5.091 4 C -0.126 4.126 5 C -0.204 4.204 6 C -0.081 4.081 7 C -0.142 4.142 8 C 0.078 3.922 9 C -0.135 4.135 10 N -0.156 5.156 11 C -0.194 4.194 12 C -0.167 4.167 13 C -0.154 4.154 14 C 0.084 3.916 15 C -0.464 4.464 16 H 0.109 0.891 17 C -0.146 4.146 18 N -0.406 5.406 19 Si 0.734 3.266 20 H -0.183 1.183 21 H -0.201 1.201 22 H -0.186 1.186 23 C -0.168 4.168 24 C 0.014 3.986 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.100 0.900 28 H 0.202 0.798 29 H 0.139 0.861 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.144 0.856 34 H 0.098 0.902 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.243 7.995 0.204 8.630 hybrid contribution 1.430 -1.322 -1.118 2.245 sum -1.813 6.674 -0.914 6.976 Atomic orbital electron populations 1.21620 0.74720 1.03686 1.02529 1.48132 1.05298 1.01567 1.65413 1.76538 1.02190 1.09599 1.20769 1.23725 0.94680 0.93922 1.00267 1.18887 0.93363 0.93283 1.14869 1.20187 0.96961 0.92103 0.98841 1.21021 0.97081 0.94852 1.01227 1.18262 0.91654 0.90906 0.91404 1.19419 1.01635 0.91603 1.00873 1.67041 1.14571 1.14885 1.19145 1.21665 1.04190 0.88849 1.04737 1.21448 0.97898 0.98827 0.98572 1.21405 0.97424 0.96252 1.00347 1.18311 0.91207 0.91825 0.90285 1.19642 1.03734 0.99872 1.23158 0.89074 1.26034 0.98168 0.93977 0.96390 1.69749 1.25622 1.10937 1.34317 0.86285 0.79188 0.79765 0.81322 1.18334 1.20104 1.18563 1.20076 0.99577 0.87916 1.09248 1.18770 0.90273 0.89356 1.00171 0.91728 0.90065 0.89959 0.79819 0.86140 0.84304 0.86106 0.88247 0.85556 0.90196 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.44 11.45 59.84 0.69 2.13 16 2 N -0.41 -7.03 4.08 -65.48 -0.27 -7.30 16 3 N -0.28 -4.66 12.44 30.86 0.38 -4.28 16 4 C 0.07 1.06 12.04 -17.02 -0.20 0.86 16 5 C -0.20 -3.51 6.17 -106.86 -0.66 -4.17 16 6 C -0.06 -1.05 10.04 -39.59 -0.40 -1.45 16 7 C -0.12 -2.46 7.73 -39.58 -0.31 -2.77 16 8 C 0.08 1.79 5.25 -104.88 -0.55 1.24 16 9 C 0.00 0.05 6.41 -82.25 -0.53 -0.48 16 10 N -0.45 -10.76 10.14 -9.18 -0.09 -10.85 16 11 C -0.03 -0.72 11.16 -17.35 -0.19 -0.92 16 12 C -0.15 -3.24 10.03 -39.83 -0.40 -3.64 16 13 C -0.13 -3.10 8.72 -38.98 -0.34 -3.44 16 14 C 0.09 2.20 5.54 -106.41 -0.59 1.61 16 15 C -0.44 -10.40 6.75 -37.92 -0.26 -10.65 16 16 H 0.09 2.13 6.42 -52.49 -0.34 1.80 16 17 C 0.07 1.68 5.21 -17.31 -0.09 1.59 16 18 N -0.78 -18.25 10.97 55.55 0.61 -17.64 16 19 Si 0.91 17.10 29.58 -169.99 -5.03 12.07 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.15 -2.94 9.62 -38.99 -0.37 -3.32 16 24 C 0.13 2.43 6.88 -84.16 -0.58 1.85 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.18 2.06 8.06 -52.48 -0.42 1.64 16 29 H 0.12 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.14 2.91 6.75 -52.49 -0.35 2.56 16 31 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 32 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.13 3.07 6.34 -52.49 -0.33 2.74 16 34 H 0.29 6.09 8.30 -40.82 -0.34 5.76 16 35 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -28.11 304.05 -8.14 -36.24 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -3.54 Total: 8.73 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -4.78 Total: -21.56 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.63 Total: -40.08 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.11 -8.14 -36.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240305537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.361 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.12 seconds