Wall clock time and date at job start Tue Mar 31 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 N 1.40018 * 125.97631 * 2 1 4 4 C 1.30211 * 109.78926 * 179.97438 * 3 2 1 5 5 C 1.41436 * 108.73596 * 359.97438 * 4 3 2 6 6 C 1.40363 * 133.36356 * 179.97438 * 5 4 3 7 7 C 1.35976 * 120.05885 * 179.75766 * 6 5 4 8 8 C 1.40394 * 120.53109 * 0.52439 * 7 6 5 9 9 C 1.47673 * 119.87110 * 179.73293 * 8 7 6 10 10 N 1.32646 * 119.99830 * 135.99039 * 9 8 7 11 11 C 1.31716 * 121.71334 * 180.02562 * 10 9 8 12 12 C 1.38907 * 121.51370 * 359.97438 * 11 10 9 13 13 C 1.36855 * 119.81288 * 0.02562 * 12 11 10 14 14 C 1.41133 * 118.40238 * 359.97438 * 13 12 11 15 15 C 1.40831 * 120.72534 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00549 * 152.84410 * 15 14 13 17 17 C 1.40062 * 120.00324 * 332.84734 * 15 14 13 18 18 N 1.30785 * 119.99546 * 345.56847 * 17 15 14 19 19 Si 1.86798 * 120.00325 * 165.56396 * 17 15 14 20 20 H 1.48495 * 109.46783 * 60.00566 * 19 17 15 21 21 H 1.48504 * 109.47034 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47135 * 300.00242 * 19 17 15 23 23 C 1.39191 * 120.25362 * 359.45921 * 8 7 6 24 24 C 1.37277 * 125.97789 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47429 * 270.03007 * 1 2 3 26 26 H 1.09008 * 109.47336 * 30.02726 * 1 2 3 27 27 H 1.09003 * 109.47769 * 150.02571 * 1 2 3 28 28 H 1.08007 * 125.63197 * 179.97438 * 4 3 2 29 29 H 1.08003 * 119.97217 * 0.02686 * 6 5 4 30 30 H 1.07998 * 119.73661 * 180.25674 * 7 6 5 31 31 H 1.07994 * 119.23877 * 180.02562 * 11 10 9 32 32 H 1.07999 * 120.08771 * 180.27514 * 12 11 10 33 33 H 1.07999 * 120.79691 * 180.02562 * 13 12 11 34 34 H 0.96999 * 120.00234 * 179.97438 * 18 17 15 35 35 H 1.08001 * 120.19634 * 180.29841 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2875 1.1331 0.0000 4 6 3.5379 0.7701 0.0005 5 6 3.6008 -0.6428 0.0015 6 6 4.6632 -1.5603 0.0020 7 6 4.4094 -2.8961 0.0080 8 6 3.0883 -3.3712 0.0027 9 6 2.8294 -4.8251 0.0033 10 7 1.8962 -5.3322 0.7980 11 6 1.6378 -6.6234 0.8261 12 6 2.3307 -7.5203 0.0230 13 6 3.3070 -7.0643 -0.8207 14 6 3.5792 -5.6797 -0.8463 15 6 4.5731 -5.1574 -1.6964 16 1 4.5012 -4.1394 -2.0497 17 6 5.6550 -5.9582 -2.0837 18 7 5.9012 -7.0756 -1.4503 19 14 6.7460 -5.4303 -3.5052 20 1 7.3654 -4.1174 -3.1926 21 1 7.8114 -6.4436 -3.7142 22 1 5.9283 -5.3108 -4.7390 23 6 2.0215 -2.4771 0.0026 24 6 2.2714 -1.1109 0.0005 25 1 -0.3634 0.0005 1.0276 26 1 -0.3634 0.8898 -0.5143 27 1 -0.3635 -0.8902 -0.5134 28 1 4.3869 1.4378 0.0003 29 1 5.6830 -1.2049 0.0019 30 1 5.2307 -3.5974 0.0125 31 1 0.8689 -6.9932 1.4883 32 1 2.0969 -8.5740 0.0615 33 1 3.8553 -7.7475 -1.4523 34 1 6.6502 -7.6304 -1.7187 35 1 1.0056 -2.8435 0.0034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240305537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:52 Heat of formation + Delta-G solvation = 98.399769 kcal Electronic energy + Delta-G solvation = -20534.962875 eV Core-core repulsion = 17498.068565 eV Total energy + Delta-G solvation = -3036.894310 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23649 -40.35105 -37.83509 -36.00548 -34.50105 -32.82207 -32.47123 -31.17048 -29.77097 -27.68994 -27.21640 -24.77877 -23.47245 -22.89152 -21.93944 -21.40828 -19.26867 -18.16455 -17.80333 -17.27524 -16.71789 -16.39820 -16.21809 -15.67014 -15.23565 -15.20154 -14.67915 -14.30888 -14.12255 -13.91086 -13.76713 -13.45711 -13.27339 -13.19132 -12.95511 -12.70176 -12.44113 -12.19068 -11.92320 -11.76761 -11.59195 -11.18902 -10.94093 -10.28233 -9.95193 -9.77298 -9.06528 -8.75387 -8.66095 -6.40702 -0.13865 0.65369 0.85015 1.09428 1.41285 1.51540 1.54511 1.55598 1.72457 2.18435 2.72284 2.96208 3.60857 3.68271 3.70385 3.94954 4.05999 4.35900 4.40718 4.45144 4.50226 4.52619 4.62608 4.67674 4.80302 4.84702 4.90040 5.04693 5.15141 5.23058 5.30057 5.57615 5.62633 5.77624 5.84473 5.98701 6.02123 6.04309 6.19369 6.50051 6.70591 6.72531 6.79133 7.69473 8.21270 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.006290 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.867887 B = 4450.665247 C = 5791.846911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.420 5.420 3 N -0.287 5.287 4 C 0.081 3.919 5 C -0.205 4.205 6 C -0.041 4.041 7 C -0.141 4.141 8 C 0.055 3.945 9 C -0.012 4.012 10 N -0.467 5.467 11 C -0.042 4.042 12 C -0.146 4.146 13 C -0.152 4.152 14 C 0.061 3.939 15 C -0.452 4.452 16 H 0.088 0.912 17 C 0.042 3.958 18 N -0.810 5.810 19 Si 0.976 3.024 20 H -0.251 1.251 21 H -0.266 1.266 22 H -0.264 1.264 23 C -0.149 4.149 24 C 0.113 3.887 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.230 0.770 29 H 0.158 0.842 30 H 0.123 0.877 31 H 0.151 0.849 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.294 0.706 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 8.476 -0.665 8.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.209 5.209 3 N -0.100 5.100 4 C -0.114 4.114 5 C -0.213 4.213 6 C -0.062 4.062 7 C -0.161 4.161 8 C 0.051 3.949 9 C -0.149 4.149 10 N -0.175 5.175 11 C -0.203 4.203 12 C -0.166 4.166 13 C -0.178 4.178 14 C 0.056 3.944 15 C -0.480 4.480 16 H 0.106 0.894 17 C -0.176 4.176 18 N -0.434 5.434 19 Si 0.796 3.204 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.188 1.188 23 C -0.172 4.172 24 C -0.002 4.002 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.246 0.754 29 H 0.176 0.824 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.656 9.848 -0.104 10.200 hybrid contribution 1.150 -1.814 -0.945 2.346 sum -1.506 8.034 -1.049 8.241 Atomic orbital electron populations 1.21937 0.72667 1.05004 1.03817 1.48519 1.06632 1.00890 1.64831 1.76545 1.02827 1.09633 1.21022 1.24397 0.95460 0.93198 0.98304 1.19244 0.92898 0.94688 1.14473 1.20487 0.98799 0.90801 0.96094 1.20903 0.95904 0.95924 1.03393 1.18339 0.92952 0.90136 0.93439 1.19822 1.01515 0.92973 1.00631 1.67106 1.15019 1.15808 1.19555 1.22223 1.04615 0.88520 1.04951 1.21741 0.96853 1.00461 0.97516 1.21470 0.98637 0.96189 1.01535 1.18660 0.92165 0.92486 0.91084 1.19729 1.04377 1.00086 1.23793 0.89434 1.26767 0.98921 0.93732 0.98193 1.69787 1.26403 1.11826 1.35422 0.85313 0.77473 0.79801 0.77806 1.17510 1.19067 1.18808 1.19961 0.98884 0.88688 1.09675 1.18864 0.91682 0.89315 1.00338 0.90443 0.87965 0.89492 0.75387 0.82431 0.85887 0.83127 0.85178 0.86420 0.89453 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 11.45 127.77 1.46 3.93 16 2 N -0.42 -13.50 4.08 -361.09 -1.47 -14.97 16 3 N -0.29 -8.83 12.44 -56.29 -0.70 -9.53 16 4 C 0.08 2.22 12.04 85.72 1.03 3.25 16 5 C -0.21 -6.89 6.17 -21.31 -0.13 -7.03 16 6 C -0.04 -1.38 10.04 22.26 0.22 -1.16 16 7 C -0.14 -5.78 7.73 22.27 0.17 -5.60 16 8 C 0.06 2.49 5.25 -20.03 -0.11 2.39 16 9 C -0.01 -0.61 6.41 42.43 0.27 -0.33 16 10 N -0.47 -22.92 10.14 -182.96 -1.86 -24.77 16 11 C -0.04 -1.87 11.16 84.87 0.95 -0.92 16 12 C -0.15 -6.46 10.03 22.11 0.22 -6.24 16 13 C -0.15 -7.59 8.72 22.66 0.20 -7.40 16 14 C 0.06 3.14 5.54 -21.02 -0.12 3.02 16 15 C -0.45 -22.24 6.75 23.35 0.16 -22.09 16 16 H 0.09 4.24 6.42 -2.91 -0.02 4.22 16 17 C 0.04 1.90 5.21 85.29 0.44 2.34 16 18 N -0.81 -38.50 10.97 21.85 0.24 -38.26 16 19 Si 0.98 34.82 29.58 68.60 2.03 36.85 16 20 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 21 H -0.27 -9.00 7.11 99.48 0.71 -8.29 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 23 C -0.15 -6.15 9.62 22.65 0.22 -5.93 16 24 C 0.11 4.19 6.88 39.11 0.27 4.46 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.23 3.93 8.06 -2.91 -0.02 3.91 16 29 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 30 H 0.12 5.35 6.75 -2.91 -0.02 5.33 16 31 H 0.15 5.63 8.06 -2.91 -0.02 5.61 16 32 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 33 H 0.12 5.95 6.34 -2.91 -0.02 5.93 16 34 H 0.29 12.61 8.30 -92.71 -0.77 11.84 16 35 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -61.95 304.05 4.63 -57.32 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 1.12 Total: 30.67 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 5.26 Total: -37.31 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -3.79 Total: -87.53 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Total: -61.95 4.63 -57.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240305537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.724 kcal (2) G-P(sol) polarization free energy of solvation -61.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds