Wall clock time and date at job start Tue Mar 31 2020 01:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40012 * 125.95912 * 2 1 4 4 C 1.30171 * 109.78450 * 179.97438 * 3 2 1 5 5 C 1.41532 * 108.70741 * 359.97438 * 4 3 2 6 6 C 1.40247 * 133.40770 * 179.97438 * 5 4 3 7 7 C 1.36096 * 120.01572 * 180.02562 * 6 5 4 8 8 C 1.40112 * 120.56359 * 359.97438 * 7 6 5 9 9 C 1.48226 * 119.84333 * 179.97438 * 8 7 6 10 10 C 1.39948 * 119.60956 * 5.00225 * 9 8 7 11 11 C 1.38673 * 119.46104 * 179.97438 * 10 9 8 12 12 C 1.38308 * 118.69417 * 0.02562 * 11 10 9 13 13 C 1.40686 * 119.19453 * 359.97438 * 12 11 10 14 14 C 1.41366 * 119.76684 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00025 * 0.02562 * 14 13 12 16 16 C 1.40008 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.30746 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99893 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47464 * 59.99871 * 18 16 14 20 20 H 1.48499 * 109.47013 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47105 * 299.99713 * 18 16 14 22 22 N 1.32259 * 119.61122 * 184.73121 * 9 8 7 23 23 C 1.38828 * 120.31201 * 359.95996 * 8 7 6 24 24 C 1.37226 * 125.96465 * 179.68937 * 2 1 3 25 25 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.02364 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.02447 * 1 2 3 28 28 H 1.07999 * 125.64843 * 179.97438 * 4 3 2 29 29 H 1.08007 * 119.98916 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.71807 * 179.97438 * 7 6 5 31 31 H 1.07997 * 120.26837 * 0.02562 * 10 9 8 32 32 H 1.07999 * 120.65903 * 180.02562 * 11 10 9 33 33 H 1.08004 * 120.40243 * 180.02562 * 12 11 10 34 34 H 0.96997 * 120.00666 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.18250 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2872 1.1333 0.0000 4 6 3.5374 0.7707 0.0005 5 6 3.6000 -0.6432 0.0015 6 6 4.6604 -1.5610 0.0020 7 6 4.4040 -2.8976 0.0025 8 6 3.0849 -3.3700 0.0031 9 6 2.8240 -4.8292 0.0030 10 6 3.8955 -5.7232 0.1084 11 6 3.6478 -7.0876 0.1086 12 6 2.3400 -7.5252 0.0033 13 6 1.3055 -6.5773 -0.0998 14 6 -0.0357 -7.0111 -0.2076 15 1 -0.2632 -8.0669 -0.2101 16 6 -1.0691 -6.0720 -0.3099 17 7 -0.7938 -4.7939 -0.3063 18 14 -2.8413 -6.6453 -0.4515 19 1 -3.2004 -7.4446 0.7474 20 1 -3.7374 -5.4648 -0.5453 21 1 -2.9952 -7.4821 -1.6687 22 7 1.5809 -5.2707 -0.0913 23 6 2.0212 -2.4780 0.0040 24 6 2.2710 -1.1107 0.0060 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.3864 1.4382 0.0003 29 1 5.6808 -1.2070 0.0011 30 1 5.2243 -3.6001 0.0024 31 1 4.9070 -5.3535 0.1898 32 1 4.4601 -7.7948 0.1894 33 1 2.1156 -8.5816 0.0010 34 1 -1.5096 -4.1433 -0.3776 35 1 1.0053 -2.8444 0.0049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240307767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:00 Heat of formation + Delta-G solvation = 124.064907 kcal Electronic energy + Delta-G solvation = -20441.482097 eV Core-core repulsion = 17405.700711 eV Total energy + Delta-G solvation = -3035.781386 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.00459 -38.45326 -36.51680 -33.70644 -33.26787 -31.24962 -30.56088 -29.78759 -28.36852 -26.29860 -25.72114 -23.18467 -22.14914 -21.09049 -20.51443 -19.97081 -17.62168 -16.55611 -16.37128 -15.55737 -15.20051 -14.87327 -14.54964 -14.04890 -13.85321 -13.55554 -13.27669 -12.91620 -12.81356 -12.43041 -12.36317 -12.29990 -11.39168 -11.29912 -11.14066 -11.04608 -10.88212 -10.71773 -10.51595 -10.38658 -9.96122 -9.71952 -9.47338 -8.69014 -8.09996 -7.70460 -7.54648 -7.18496 -6.50660 -4.59984 1.16714 1.93540 2.61056 2.69932 2.84575 3.02626 3.05284 3.10471 3.21039 3.88034 4.29949 4.72460 4.77025 4.99813 5.18677 5.26207 5.42650 5.60523 5.65030 5.68123 5.82483 5.85971 6.03830 6.06628 6.15318 6.41426 6.56782 6.66645 6.70943 6.78922 6.87235 7.06910 7.17613 7.24260 7.31777 7.46221 7.53124 7.65813 7.92787 7.94927 8.14172 8.58181 8.83193 9.96061 10.21842 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.006213 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.194987 B = 4505.413963 C = 6244.705091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.407 5.407 3 N -0.269 5.269 4 C 0.063 3.937 5 C -0.189 4.189 6 C -0.060 4.060 7 C -0.139 4.139 8 C 0.026 3.974 9 C 0.171 3.829 10 C -0.295 4.295 11 C -0.061 4.061 12 C -0.269 4.269 13 C 0.256 3.744 14 C -0.431 4.431 15 H 0.084 0.916 16 C 0.072 3.928 17 N -0.720 5.720 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.278 1.278 21 H -0.265 1.265 22 N -0.466 5.466 23 C -0.104 4.104 24 C 0.122 3.878 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.186 0.814 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.271 0.729 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 6.971 0.485 7.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.196 5.196 3 N -0.083 5.083 4 C -0.131 4.131 5 C -0.197 4.197 6 C -0.081 4.081 7 C -0.159 4.159 8 C 0.022 3.978 9 C 0.027 3.973 10 C -0.318 4.318 11 C -0.085 4.085 12 C -0.292 4.292 13 C 0.131 3.869 14 C -0.462 4.462 15 H 0.102 0.898 16 C -0.153 4.153 17 N -0.342 5.342 18 Si 0.732 3.268 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.189 1.189 22 N -0.179 5.179 23 C -0.126 4.126 24 C 0.007 3.993 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.100 0.900 28 H 0.203 0.797 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.019 8.762 0.405 9.001 hybrid contribution 0.424 -1.578 -0.020 1.634 sum 2.444 7.184 0.385 7.598 Atomic orbital electron populations 1.21727 0.74130 1.04078 1.02942 1.48197 1.05611 1.01381 1.64412 1.76539 1.02215 1.09813 1.19734 1.23752 0.94769 0.93771 1.00822 1.18949 0.93469 0.93438 1.13813 1.20110 0.97044 0.91928 0.99014 1.20781 0.96354 0.95051 1.03726 1.18611 0.91793 0.91849 0.95537 1.19690 0.90701 0.90820 0.96045 1.21236 0.97912 0.93643 1.19009 1.20803 0.95841 0.94745 0.97072 1.21820 0.93509 0.99066 1.14802 1.18503 0.93110 0.86717 0.88594 1.19556 0.89635 0.94317 1.42712 0.89818 1.26014 1.01218 0.94619 0.93408 1.70069 1.33506 1.01365 1.29248 0.86384 0.81303 0.79197 0.79920 1.18954 1.20241 1.18945 1.68729 1.16697 1.15869 1.16591 1.20634 1.02225 0.87323 1.02422 1.18944 0.90154 0.89797 1.00373 0.91422 0.89235 0.90042 0.79682 0.85988 0.85477 0.88150 0.88349 0.88200 0.91770 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.53 11.45 59.85 0.69 2.22 16 2 N -0.41 -7.00 4.07 -65.48 -0.27 -7.27 16 3 N -0.27 -4.44 12.44 30.87 0.38 -4.05 16 4 C 0.06 0.93 12.04 -17.00 -0.20 0.73 16 5 C -0.19 -3.17 6.17 -106.89 -0.66 -3.83 16 6 C -0.06 -0.93 10.04 -39.60 -0.40 -1.32 16 7 C -0.14 -2.42 9.33 -39.65 -0.37 -2.79 16 8 C 0.03 0.55 5.87 -104.87 -0.62 -0.07 16 9 C 0.17 4.09 6.73 -82.94 -0.56 3.53 16 10 C -0.29 -6.44 9.46 -38.78 -0.37 -6.81 16 11 C -0.06 -1.32 10.15 -39.40 -0.40 -1.72 16 12 C -0.27 -6.42 9.83 -38.63 -0.38 -6.80 16 13 C 0.26 6.79 6.55 -85.01 -0.56 6.24 16 14 C -0.43 -11.10 9.14 -37.73 -0.34 -11.45 16 15 H 0.08 2.02 7.85 -52.49 -0.41 1.60 16 16 C 0.07 1.75 5.50 -17.35 -0.10 1.66 16 17 N -0.72 -17.88 11.12 55.55 0.62 -17.27 16 18 Si 0.91 17.90 29.56 -169.99 -5.02 12.87 16 19 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 20 H -0.28 -5.33 7.11 56.52 0.40 -4.92 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 22 N -0.47 -12.31 6.89 -7.68 -0.05 -12.36 16 23 C -0.10 -2.17 9.54 -39.08 -0.37 -2.54 16 24 C 0.12 2.30 6.88 -84.17 -0.58 1.72 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.97 6.15 -52.49 -0.32 1.65 16 31 H 0.10 1.89 6.17 -52.49 -0.32 1.56 16 32 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 34 H 0.27 6.08 8.29 -40.82 -0.34 5.74 16 35 H 0.16 3.57 7.18 -52.49 -0.38 3.20 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -29.66 306.37 -8.47 -38.13 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -3.53 Total: 6.56 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -5.22 Total: -21.23 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.68 Total: -40.95 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.66 -8.47 -38.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240307767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.193 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds