Wall clock time and date at job start Tue Mar 31 2020 01:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40012 * 125.95912 * 2 1 4 4 C 1.30171 * 109.78450 * 179.97438 * 3 2 1 5 5 C 1.41532 * 108.70741 * 359.97438 * 4 3 2 6 6 C 1.40247 * 133.40770 * 179.97438 * 5 4 3 7 7 C 1.36096 * 120.01572 * 180.02562 * 6 5 4 8 8 C 1.40112 * 120.56359 * 359.97438 * 7 6 5 9 9 C 1.48226 * 119.84333 * 179.97438 * 8 7 6 10 10 C 1.39948 * 119.60956 * 5.00225 * 9 8 7 11 11 C 1.38673 * 119.46104 * 179.97438 * 10 9 8 12 12 C 1.38308 * 118.69417 * 0.02562 * 11 10 9 13 13 C 1.40686 * 119.19453 * 359.97438 * 12 11 10 14 14 C 1.41366 * 119.76684 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00025 * 0.02562 * 14 13 12 16 16 C 1.40008 * 120.00085 * 179.97438 * 14 13 12 17 17 N 1.30746 * 120.00363 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99893 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47464 * 59.99871 * 18 16 14 20 20 H 1.48499 * 109.47013 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.47105 * 299.99713 * 18 16 14 22 22 N 1.32259 * 119.61122 * 184.73121 * 9 8 7 23 23 C 1.38828 * 120.31201 * 359.95996 * 8 7 6 24 24 C 1.37226 * 125.96465 * 179.68937 * 2 1 3 25 25 H 1.09001 * 109.47060 * 90.02876 * 1 2 3 26 26 H 1.09004 * 109.47073 * 210.02364 * 1 2 3 27 27 H 1.09000 * 109.47212 * 330.02447 * 1 2 3 28 28 H 1.07999 * 125.64843 * 179.97438 * 4 3 2 29 29 H 1.08007 * 119.98916 * 359.97438 * 6 5 4 30 30 H 1.07999 * 119.71807 * 179.97438 * 7 6 5 31 31 H 1.07997 * 120.26837 * 0.02562 * 10 9 8 32 32 H 1.07999 * 120.65903 * 180.02562 * 11 10 9 33 33 H 1.08004 * 120.40243 * 180.02562 * 12 11 10 34 34 H 0.96997 * 120.00666 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.18250 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2872 1.1333 0.0000 4 6 3.5374 0.7707 0.0005 5 6 3.6000 -0.6432 0.0015 6 6 4.6604 -1.5610 0.0020 7 6 4.4040 -2.8976 0.0025 8 6 3.0849 -3.3700 0.0031 9 6 2.8240 -4.8292 0.0030 10 6 3.8955 -5.7232 0.1084 11 6 3.6478 -7.0876 0.1086 12 6 2.3400 -7.5252 0.0033 13 6 1.3055 -6.5773 -0.0998 14 6 -0.0357 -7.0111 -0.2076 15 1 -0.2632 -8.0669 -0.2101 16 6 -1.0691 -6.0720 -0.3099 17 7 -0.7938 -4.7939 -0.3063 18 14 -2.8413 -6.6453 -0.4515 19 1 -3.2004 -7.4446 0.7474 20 1 -3.7374 -5.4648 -0.5453 21 1 -2.9952 -7.4821 -1.6687 22 7 1.5809 -5.2707 -0.0913 23 6 2.0212 -2.4780 0.0040 24 6 2.2710 -1.1107 0.0060 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.3864 1.4382 0.0003 29 1 5.6808 -1.2070 0.0011 30 1 5.2243 -3.6001 0.0024 31 1 4.9070 -5.3535 0.1898 32 1 4.4601 -7.7948 0.1894 33 1 2.1156 -8.5816 0.0010 34 1 -1.5096 -4.1433 -0.3776 35 1 1.0053 -2.8444 0.0049 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240307767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:58 Heat of formation + Delta-G solvation = 107.912273 kcal Electronic energy + Delta-G solvation = -20442.182528 eV Core-core repulsion = 17405.700711 eV Total energy + Delta-G solvation = -3036.481817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.29389 -40.17774 -37.95180 -35.48929 -34.52429 -32.86040 -32.30625 -31.15923 -29.94356 -27.61314 -27.39262 -24.75978 -23.66285 -22.67381 -21.91662 -21.40667 -19.36516 -17.89619 -17.86950 -17.14892 -16.49870 -16.44398 -16.25562 -15.52182 -15.24576 -15.03037 -14.71058 -14.43671 -14.22333 -13.94339 -13.87342 -13.46825 -12.96181 -12.84180 -12.79599 -12.55782 -12.50595 -12.38095 -11.93568 -11.78371 -11.60906 -11.23054 -10.99312 -10.33099 -9.86631 -9.51391 -8.96406 -8.72487 -8.29478 -6.50464 -0.27337 0.58681 0.99391 1.19059 1.39266 1.49412 1.50086 1.52240 1.76711 2.21610 2.75917 3.07534 3.57790 3.64411 3.80824 3.99625 4.04302 4.28974 4.34656 4.39156 4.46395 4.51148 4.60855 4.74831 4.80566 4.81776 4.91337 4.98710 5.15870 5.28342 5.40401 5.54167 5.59616 5.66663 5.82442 5.90363 5.96801 6.10123 6.20501 6.28301 6.67816 6.74709 6.95924 8.14782 8.44286 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.006213 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.194987 B = 4505.413963 C = 6244.705091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.420 5.420 3 N -0.285 5.285 4 C 0.081 3.919 5 C -0.196 4.196 6 C -0.035 4.035 7 C -0.147 4.147 8 C 0.002 3.998 9 C 0.148 3.852 10 C -0.292 4.292 11 C -0.058 4.058 12 C -0.293 4.293 13 C 0.221 3.779 14 C -0.470 4.470 15 H 0.087 0.913 16 C 0.028 3.972 17 N -0.750 5.750 18 Si 0.983 3.017 19 H -0.261 1.261 20 H -0.269 1.269 21 H -0.261 1.261 22 N -0.498 5.498 23 C -0.127 4.127 24 C 0.101 3.899 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.237 0.763 29 H 0.174 0.826 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.276 0.724 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 8.405 0.520 10.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.208 5.208 3 N -0.098 5.098 4 C -0.114 4.114 5 C -0.204 4.204 6 C -0.056 4.056 7 C -0.167 4.167 8 C -0.002 4.002 9 C 0.005 3.995 10 C -0.314 4.314 11 C -0.082 4.082 12 C -0.315 4.315 13 C 0.095 3.905 14 C -0.501 4.501 15 H 0.105 0.895 16 C -0.194 4.194 17 N -0.372 5.372 18 Si 0.804 3.196 19 H -0.185 1.185 20 H -0.193 1.193 21 H -0.185 1.185 22 N -0.211 5.211 23 C -0.150 4.150 24 C -0.014 4.014 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.253 0.747 29 H 0.191 0.809 30 H 0.167 0.833 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.200 10.201 0.443 11.041 hybrid contribution -0.090 -1.909 -0.018 1.911 sum 4.109 8.292 0.425 9.264 Atomic orbital electron populations 1.21870 0.73088 1.04699 1.03591 1.48501 1.06551 1.01170 1.64610 1.76543 1.03107 1.09620 1.20575 1.24535 0.95387 0.93282 0.98163 1.19390 0.92793 0.94878 1.13303 1.20607 0.98987 0.90606 0.95353 1.20970 0.94946 0.96611 1.04204 1.18770 0.93703 0.90451 0.97301 1.20349 0.90641 0.92917 0.95638 1.21672 0.99090 0.93556 1.17130 1.21253 0.96009 0.95636 0.95329 1.22026 0.94290 0.99293 1.15917 1.19004 0.94372 0.87644 0.89485 1.19897 0.90525 0.94954 1.44748 0.89470 1.26882 1.05315 0.94522 0.92669 1.70188 1.34970 1.02388 1.29685 0.85253 0.75696 0.78817 0.79871 1.18505 1.19296 1.18535 1.68710 1.18543 1.16068 1.17821 1.20385 1.00970 0.88815 1.04805 1.19050 0.92056 0.89380 1.00953 0.90784 0.90268 0.87734 0.74709 0.80866 0.83304 0.84555 0.84338 0.87189 0.91310 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.02 11.45 127.77 1.46 4.48 16 2 N -0.42 -14.34 4.07 -361.07 -1.47 -15.81 16 3 N -0.28 -8.79 12.44 -56.25 -0.70 -9.48 16 4 C 0.08 2.06 12.04 85.75 1.03 3.09 16 5 C -0.20 -6.04 6.17 -21.33 -0.13 -6.17 16 6 C -0.04 -0.94 10.04 22.26 0.22 -0.72 16 7 C -0.15 -4.79 9.33 22.23 0.21 -4.58 16 8 C 0.00 0.07 5.87 -20.03 -0.12 -0.05 16 9 C 0.15 7.23 6.73 42.15 0.28 7.51 16 10 C -0.29 -12.48 9.46 22.79 0.22 -12.26 16 11 C -0.06 -2.48 10.15 22.39 0.23 -2.25 16 12 C -0.29 -14.30 9.83 22.88 0.23 -14.07 16 13 C 0.22 12.30 6.55 40.25 0.26 12.57 16 14 C -0.47 -25.52 9.14 23.47 0.21 -25.30 16 15 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 16 C 0.03 1.41 5.50 85.28 0.47 1.88 16 17 N -0.75 -39.60 11.12 21.83 0.24 -39.36 16 18 Si 0.98 38.04 29.56 68.60 2.03 40.07 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.27 -9.85 7.11 99.48 0.71 -9.15 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 N -0.50 -27.75 6.89 -178.23 -1.23 -28.98 16 23 C -0.13 -5.56 9.54 22.59 0.22 -5.35 16 24 C 0.10 3.81 6.88 39.13 0.27 4.08 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.24 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.15 4.07 6.15 -2.91 -0.02 4.05 16 31 H 0.14 4.71 6.17 -2.91 -0.02 4.69 16 32 H 0.14 4.67 8.06 -2.91 -0.02 4.64 16 33 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 34 H 0.28 13.20 8.29 -92.71 -0.77 12.43 16 35 H 0.12 6.19 7.18 -2.91 -0.02 6.17 16 Total: -1.00 -69.15 306.37 5.05 -64.10 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 1.12 Total: 26.63 kcal Atomic # 6 Polarization: -42.21 SS G_CDS: 5.06 Total: -37.15 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -3.16 Total: -93.64 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -69.15 5.05 -64.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240307767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.010 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds