Wall clock time and date at job start Tue Mar 31 2020 01:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40014 * 125.97371 * 2 1 4 4 C 1.30232 * 109.78324 * 180.02562 * 3 2 1 5 5 C 1.41433 * 108.73335 * 359.97438 * 4 3 2 6 6 C 1.40359 * 133.36499 * 180.02562 * 5 4 3 7 7 C 1.35994 * 120.04647 * 179.97438 * 6 5 4 8 8 C 1.40339 * 120.54343 * 0.07949 * 7 6 5 9 9 C 1.47822 * 119.86717 * 179.97438 * 8 7 6 10 10 C 1.40349 * 120.35344 * 359.92549 * 9 8 7 11 11 C 1.36617 * 118.60436 * 179.97438 * 10 9 8 12 12 C 1.40914 * 119.26300 * 359.97438 * 11 10 9 13 13 C 1.40919 * 119.67942 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99708 * 353.66485 * 13 12 11 15 15 C 1.40079 * 120.00670 * 173.66500 * 13 12 11 16 16 N 1.30737 * 119.99509 * 6.30239 * 15 13 12 17 17 Si 1.86800 * 120.00643 * 186.31083 * 15 13 12 18 18 H 1.48501 * 109.47008 * 94.98113 * 17 15 13 19 19 H 1.48495 * 109.47277 * 214.98169 * 17 15 13 20 20 H 1.48506 * 109.46674 * 334.98250 * 17 15 13 21 21 N 1.33807 * 120.64745 * 359.97438 * 12 11 10 22 22 C 1.31169 * 121.51208 * 359.76410 * 21 12 11 23 23 C 1.39152 * 120.26031 * 359.90161 * 8 7 6 24 24 C 1.37282 * 125.97822 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47016 * 270.00217 * 1 2 3 26 26 H 1.09000 * 109.46820 * 30.00259 * 1 2 3 27 27 H 1.08997 * 109.46998 * 149.99833 * 1 2 3 28 28 H 1.08003 * 125.63038 * 180.02562 * 4 3 2 29 29 H 1.08003 * 119.97957 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.72726 * 180.02562 * 7 6 5 31 31 H 1.07995 * 120.69841 * 359.95239 * 10 9 8 32 32 H 1.07997 * 120.37001 * 179.97438 * 11 10 9 33 33 H 0.96997 * 119.99692 * 179.97438 * 16 15 13 34 34 H 1.07995 * 119.66716 * 180.26228 * 22 21 12 35 35 H 1.08005 * 120.19361 * 180.33064 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2875 1.1331 0.0000 4 6 3.5382 0.7700 -0.0005 5 6 3.6009 -0.6430 -0.0003 6 6 4.6631 -1.5605 -0.0003 7 6 4.4088 -2.8965 0.0005 8 6 3.0881 -3.3711 -0.0005 9 6 2.8289 -4.8264 -0.0003 10 6 3.8969 -5.7370 -0.0006 11 6 3.6164 -7.0741 0.0002 12 6 2.2718 -7.4958 0.0018 13 6 1.9725 -8.8729 0.0032 14 1 2.7661 -9.5981 -0.1003 15 6 0.6457 -9.3012 0.1387 16 7 -0.3264 -8.4270 0.1400 17 14 0.2653 -11.1213 0.3177 18 1 0.1504 -11.4636 1.7582 19 1 -1.0155 -11.4291 -0.3679 20 1 1.3586 -11.9180 -0.2948 21 7 1.2765 -6.6016 0.0031 22 6 1.5139 -5.3115 0.0076 23 6 2.0217 -2.4772 -0.0002 24 6 2.2715 -1.1109 -0.0005 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8899 -0.5138 28 1 4.3871 1.4376 -0.0003 29 1 5.6830 -1.2053 -0.0008 30 1 5.2300 -3.5979 0.0010 31 1 4.9189 -5.3881 -0.0018 32 1 4.4162 -7.7998 -0.0005 33 1 -1.2452 -8.7236 0.2334 34 1 0.6877 -4.6160 0.0128 35 1 1.0057 -2.8436 0.0044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240309130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:32 Heat of formation + Delta-G solvation = 104.117674 kcal Electronic energy + Delta-G solvation = -19887.796932 eV Core-core repulsion = 16851.150569 eV Total energy + Delta-G solvation = -3036.646363 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23135 -40.24445 -38.00956 -35.60696 -34.49082 -32.93197 -32.51343 -31.13070 -30.02643 -27.64041 -27.10930 -24.62648 -23.87957 -22.63812 -21.92869 -21.37855 -19.49860 -18.16256 -17.77321 -17.30650 -16.61903 -16.39795 -16.09023 -15.64466 -15.24725 -15.02332 -14.45842 -14.37237 -14.32347 -13.88336 -13.85619 -13.55183 -13.31461 -13.01887 -12.74362 -12.62399 -12.57202 -12.10227 -11.87224 -11.81568 -11.69195 -11.28552 -10.96849 -10.38330 -10.00589 -9.54405 -8.91270 -8.72915 -8.40242 -6.52698 -0.21606 0.61602 0.96892 1.20681 1.40404 1.49136 1.54736 1.55467 1.81533 2.18684 2.71728 3.09857 3.61145 3.72123 3.92044 3.97439 4.08799 4.17467 4.30741 4.37901 4.43515 4.49653 4.51351 4.62534 4.80561 4.82914 4.90569 4.99898 5.11624 5.14546 5.40270 5.44278 5.58684 5.61360 5.76868 6.00413 6.01797 6.06732 6.19593 6.23186 6.62296 6.71671 6.86926 8.09868 8.32969 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.032750 B = 0.003746 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.767945 B = 7473.801222 C = 8309.286909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.424 5.424 3 N -0.295 5.295 4 C 0.082 3.918 5 C -0.223 4.223 6 C -0.023 4.023 7 C -0.178 4.178 8 C 0.060 3.940 9 C -0.272 4.272 10 C -0.032 4.032 11 C -0.286 4.286 12 C 0.218 3.782 13 C -0.444 4.444 14 H 0.098 0.902 15 C 0.020 3.980 16 N -0.743 5.743 17 Si 0.992 3.008 18 H -0.263 1.263 19 H -0.267 1.267 20 H -0.251 1.251 21 N -0.524 5.524 22 C 0.136 3.864 23 C -0.191 4.191 24 C 0.123 3.877 25 H 0.076 0.924 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.229 0.771 29 H 0.163 0.837 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.118 0.882 33 H 0.283 0.717 34 H 0.132 0.868 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.813 10.507 0.055 11.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.213 5.213 3 N -0.108 5.108 4 C -0.112 4.112 5 C -0.231 4.231 6 C -0.043 4.043 7 C -0.197 4.197 8 C 0.056 3.944 9 C -0.277 4.277 10 C -0.055 4.055 11 C -0.308 4.308 12 C 0.095 3.905 13 C -0.473 4.473 14 H 0.116 0.884 15 C -0.204 4.204 16 N -0.364 5.364 17 Si 0.811 3.189 18 H -0.188 1.188 19 H -0.192 1.192 20 H -0.174 1.174 21 N -0.237 5.237 22 C -0.031 4.031 23 C -0.213 4.213 24 C 0.007 3.993 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.107 0.893 28 H 0.245 0.755 29 H 0.180 0.820 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.693 11.195 0.056 11.514 hybrid contribution 0.638 -1.154 0.091 1.321 sum 3.330 10.041 0.148 10.580 Atomic orbital electron populations 1.21924 0.72870 1.05004 1.03731 1.48545 1.06613 1.01136 1.64957 1.76576 1.02988 1.09761 1.21495 1.24428 0.95367 0.93528 0.97909 1.19254 0.93090 0.94603 1.16114 1.20568 0.98714 0.91032 0.93993 1.20929 0.95633 0.96234 1.06912 1.18656 0.93210 0.90914 0.91605 1.19300 0.94496 0.92102 1.21847 1.21057 0.98414 0.92302 0.93720 1.21654 0.96916 0.96399 1.15819 1.19157 0.88309 0.94202 0.88807 1.20174 0.94668 0.91690 1.40811 0.88430 1.27147 0.95523 1.05014 0.92666 1.70223 1.01031 1.37803 1.27310 0.85046 0.79016 0.75373 0.79437 1.18789 1.19189 1.17391 1.68740 1.34790 1.00971 1.19204 1.23084 0.94667 0.93050 0.92334 1.19954 0.99321 0.88867 1.13167 1.18948 0.91688 0.89414 0.99205 0.90586 0.88216 0.89346 0.75488 0.81960 0.84362 0.84402 0.86446 0.90595 0.85121 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.33 11.45 127.77 1.46 3.79 16 2 N -0.42 -12.71 4.08 -361.08 -1.47 -14.18 16 3 N -0.29 -8.48 12.44 -56.29 -0.70 -9.18 16 4 C 0.08 2.00 12.04 85.72 1.03 3.03 16 5 C -0.22 -6.43 6.17 -21.32 -0.13 -6.56 16 6 C -0.02 -0.58 10.04 22.26 0.22 -0.36 16 7 C -0.18 -5.41 9.35 22.26 0.21 -5.21 16 8 C 0.06 2.23 5.88 -20.01 -0.12 2.11 16 9 C -0.27 -11.82 5.92 -19.76 -0.12 -11.93 16 10 C -0.03 -1.34 9.46 22.40 0.21 -1.13 16 11 C -0.29 -13.41 9.76 22.55 0.22 -13.19 16 12 C 0.22 11.78 6.54 40.15 0.26 12.05 16 13 C -0.44 -23.10 9.11 23.37 0.21 -22.89 16 14 H 0.10 4.66 7.86 -2.91 -0.02 4.63 16 15 C 0.02 0.98 5.49 85.30 0.47 1.44 16 16 N -0.74 -38.93 11.47 21.85 0.25 -38.68 16 17 Si 0.99 36.17 29.57 68.60 2.03 38.20 16 18 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 19 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 20 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 21 N -0.52 -28.97 7.86 -188.19 -1.48 -30.44 16 22 C 0.14 6.62 10.60 85.26 0.90 7.52 16 23 C -0.19 -6.83 9.41 22.65 0.21 -6.62 16 24 C 0.12 4.07 6.88 39.11 0.27 4.34 16 25 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.23 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.14 3.69 6.21 -2.91 -0.02 3.67 16 31 H 0.14 4.65 6.26 -2.91 -0.02 4.63 16 32 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 33 H 0.28 13.30 8.29 -92.71 -0.77 12.53 16 34 H 0.13 5.82 6.19 -2.91 -0.02 5.80 16 35 H 0.12 4.12 6.18 -2.91 -0.02 4.10 16 Total: -1.00 -66.89 304.40 5.08 -61.81 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 1.13 Total: 26.06 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 5.32 Total: -33.60 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.40 Total: -92.48 kcal Atomic # 14 Polarization: 36.17 SS G_CDS: 2.03 Total: 38.20 kcal Total: -66.89 5.08 -61.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240309130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.929 kcal (2) G-P(sol) polarization free energy of solvation -66.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds