Wall clock time and date at job start Tue Mar 31 2020 01:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40008 * 125.96418 * 2 1 4 4 C 1.30140 * 109.79087 * 180.02562 * 3 2 1 5 5 C 1.41573 * 108.69794 * 359.97438 * 4 3 2 6 6 C 1.40214 * 133.41346 * 179.97438 * 5 4 3 7 7 C 1.36130 * 120.00009 * 179.72732 * 6 5 4 8 8 C 1.40050 * 120.56841 * 0.56016 * 7 6 5 9 9 C 1.48358 * 119.83280 * 179.73562 * 8 7 6 10 10 C 1.39745 * 120.41195 * 179.75198 * 9 8 7 11 11 N 1.31905 * 121.14467 * 179.97438 * 10 9 8 12 12 C 1.31520 * 122.12470 * 359.97438 * 11 10 9 13 13 C 1.40779 * 120.67567 * 359.74232 * 12 11 10 14 14 C 1.41437 * 120.60656 * 180.26336 * 13 12 11 15 15 H 1.07995 * 119.99693 * 23.73350 * 14 13 12 16 16 C 1.39928 * 120.00050 * 203.74329 * 14 13 12 17 17 N 1.30835 * 120.00248 * 17.53243 * 16 14 13 18 18 Si 1.86800 * 119.99767 * 197.54621 * 16 14 13 19 19 H 1.48497 * 109.47422 * 89.99792 * 18 16 14 20 20 H 1.48506 * 109.46739 * 209.99266 * 18 16 14 21 21 H 1.48494 * 109.47168 * 329.99029 * 18 16 14 22 22 C 1.39168 * 120.41613 * 359.72182 * 9 8 7 23 23 C 1.38728 * 120.32905 * 359.46051 * 8 7 6 24 24 C 1.37217 * 125.95832 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.46745 * 269.99886 * 1 2 3 26 26 H 1.08996 * 109.47146 * 29.99511 * 1 2 3 27 27 H 1.08996 * 109.47478 * 150.00039 * 1 2 3 28 28 H 1.08001 * 125.65273 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.00275 * 0.03160 * 6 5 4 30 30 H 1.08006 * 119.71668 * 180.29945 * 7 6 5 31 31 H 1.08005 * 119.42199 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.66046 * 180.02562 * 12 11 10 33 33 H 0.97000 * 119.99629 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.95450 * 0.02562 * 22 9 8 35 35 H 1.07998 * 120.18506 * 180.23329 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2873 1.1332 0.0000 4 6 3.5372 0.7707 -0.0005 5 6 3.5995 -0.6437 -0.0003 6 6 4.6595 -1.5615 -0.0012 7 6 4.4024 -2.8983 0.0049 8 6 3.0837 -3.3699 0.0003 9 6 2.8222 -4.8303 0.0011 10 6 1.5112 -5.3142 0.0017 11 7 1.2622 -6.6096 0.0019 12 6 2.2239 -7.5067 0.0011 13 6 3.5750 -7.1112 -0.0055 14 6 4.6081 -8.0772 -0.0119 15 1 4.4157 -9.0709 -0.3885 16 6 5.8792 -7.7454 0.4697 17 7 6.0368 -6.6910 1.2282 18 14 7.3514 -8.8077 0.0296 19 1 7.9676 -8.3047 -1.2244 20 1 8.3487 -8.7512 1.1284 21 1 6.9082 -10.2116 -0.1651 22 6 3.8794 -5.7354 0.0007 23 6 2.0208 -2.4784 0.0006 24 6 2.2708 -1.1107 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5138 28 1 4.3862 1.4382 -0.0011 29 1 5.6800 -1.2079 -0.0017 30 1 5.2224 -3.6012 0.0092 31 1 0.6877 -4.6154 0.0020 32 1 1.9746 -8.5575 0.0010 33 1 6.9181 -6.4609 1.5617 34 1 4.9037 -5.3931 0.0001 35 1 1.0049 -2.8447 0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240309134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:39 Heat of formation + Delta-G solvation = 111.844079 kcal Electronic energy + Delta-G solvation = -20140.041329 eV Core-core repulsion = 17103.730008 eV Total energy + Delta-G solvation = -3036.311321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -41.16707 -38.64953 -36.72415 -34.20056 -33.50116 -31.65417 -30.60857 -29.95541 -27.98942 -26.55693 -25.66804 -23.18103 -22.60992 -21.25618 -20.59443 -20.06320 -17.45437 -16.94416 -16.48815 -15.66948 -15.38325 -15.29782 -14.84224 -14.22578 -13.98756 -13.82189 -13.20217 -13.07022 -12.94343 -12.62592 -12.54981 -12.16731 -11.72040 -11.47059 -11.42678 -11.27619 -11.10635 -10.73432 -10.67416 -10.51807 -9.96064 -9.88417 -9.47128 -9.02511 -8.21398 -7.95787 -7.68973 -7.27517 -6.93709 -4.59460 0.99684 1.82360 2.42912 2.52630 2.70159 2.97781 3.00883 3.06162 3.11749 3.78334 4.18525 4.54752 4.55415 4.83103 5.02750 5.18316 5.27311 5.37958 5.41003 5.56413 5.58999 5.61535 5.89023 5.93157 6.08904 6.24496 6.42561 6.54660 6.64528 6.69768 6.79233 6.96152 7.05122 7.07444 7.16443 7.30849 7.57423 7.73627 7.76997 7.81601 8.30270 8.56177 8.58883 9.50674 9.95814 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.004577 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.085916 B = 6116.278087 C = 7201.646641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.413 5.413 3 N -0.270 5.270 4 C 0.071 3.929 5 C -0.195 4.195 6 C -0.045 4.045 7 C -0.143 4.143 8 C 0.048 3.952 9 C -0.099 4.099 10 C -0.021 4.021 11 N -0.470 5.470 12 C -0.014 4.014 13 C 0.060 3.940 14 C -0.448 4.448 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.789 5.789 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.110 4.110 23 C -0.153 4.153 24 C 0.132 3.868 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.188 0.812 29 H 0.124 0.876 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.285 0.715 34 H 0.136 0.864 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 9.908 -1.742 10.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.202 5.202 3 N -0.084 5.084 4 C -0.124 4.124 5 C -0.203 4.203 6 C -0.066 4.066 7 C -0.162 4.162 8 C 0.044 3.956 9 C -0.102 4.102 10 C -0.179 4.179 11 N -0.177 5.177 12 C -0.175 4.175 13 C 0.055 3.945 14 C -0.478 4.478 15 H 0.103 0.897 16 C -0.144 4.144 17 N -0.413 5.413 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.135 4.135 23 C -0.175 4.175 24 C 0.017 3.983 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.205 0.795 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.831 10.789 -1.590 11.266 hybrid contribution 2.067 -0.786 -0.015 2.211 sum -0.764 10.003 -1.605 10.160 Atomic orbital electron populations 1.21683 0.74374 1.03956 1.02787 1.48182 1.05505 1.01451 1.65046 1.76560 1.02201 1.09484 1.20133 1.23803 0.94796 0.93788 1.00034 1.18912 0.93339 0.93461 1.14545 1.20244 0.97270 0.92006 0.97074 1.20929 0.96847 0.95212 1.03260 1.18777 0.92057 0.92476 0.92296 1.19430 0.95497 0.90550 1.04696 1.21785 0.93418 0.91617 1.11067 1.66947 1.37973 1.02333 1.10472 1.22576 0.88848 0.97172 1.08911 1.18483 0.93231 0.92954 0.89815 1.19584 0.93656 0.98958 1.35595 0.89696 1.25974 1.00702 0.95445 0.92289 1.69780 1.25557 1.23792 1.22194 0.86220 0.79912 0.80998 0.79186 1.19059 1.20124 1.18394 1.21898 0.98126 0.92353 1.01115 1.20026 0.99717 0.88195 1.09528 1.18755 0.90385 0.89402 0.99719 0.91481 0.89819 0.89770 0.79519 0.85768 0.84781 0.86108 0.85477 0.90386 0.84669 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.21 11.45 59.85 0.69 1.89 16 2 N -0.41 -6.21 4.07 -65.48 -0.27 -6.48 16 3 N -0.27 -4.09 12.44 30.87 0.38 -3.71 16 4 C 0.07 0.97 12.04 -17.00 -0.20 0.77 16 5 C -0.19 -3.09 6.17 -106.90 -0.66 -3.75 16 6 C -0.05 -0.70 10.04 -39.60 -0.40 -1.09 16 7 C -0.14 -2.57 9.35 -39.66 -0.37 -2.94 16 8 C 0.05 0.93 5.88 -104.87 -0.62 0.31 16 9 C -0.10 -2.23 5.88 -104.82 -0.62 -2.84 16 10 C -0.02 -0.47 10.59 -16.96 -0.18 -0.65 16 11 N -0.47 -11.33 10.32 -12.27 -0.13 -11.45 16 12 C -0.01 -0.35 10.96 -16.73 -0.18 -0.53 16 13 C 0.06 1.50 5.59 -106.71 -0.60 0.91 16 14 C -0.45 -11.03 9.08 -37.73 -0.34 -11.38 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.73 5.18 -17.34 -0.09 1.64 16 17 N -0.79 -18.73 10.91 55.55 0.61 -18.13 16 18 Si 0.91 17.30 29.59 -169.99 -5.03 12.27 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 22 C -0.11 -2.66 8.16 -38.23 -0.31 -2.97 16 23 C -0.15 -2.68 9.40 -39.10 -0.37 -3.04 16 24 C 0.13 2.21 6.88 -84.17 -0.58 1.63 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.13 2.45 6.22 -52.48 -0.33 2.12 16 31 H 0.12 2.38 6.18 -52.48 -0.32 2.05 16 32 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 34 H 0.14 3.26 4.40 -52.49 -0.23 3.03 16 35 H 0.13 2.01 6.18 -52.49 -0.32 1.69 16 LS Contribution 303.09 15.07 4.57 4.57 Total: -1.00 -28.77 303.09 -7.99 -36.76 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -3.29 Total: 8.21 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -4.83 Total: -22.04 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.60 Total: -39.77 kcal Atomic # 14 Polarization: 17.30 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.77 -7.99 -36.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240309134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.601 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds