Wall clock time and date at job start Tue Mar 31 2020 01:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40008 * 125.96418 * 2 1 4 4 C 1.30140 * 109.79087 * 180.02562 * 3 2 1 5 5 C 1.41573 * 108.69794 * 359.97438 * 4 3 2 6 6 C 1.40214 * 133.41346 * 179.97438 * 5 4 3 7 7 C 1.36130 * 120.00009 * 179.72732 * 6 5 4 8 8 C 1.40050 * 120.56841 * 0.56016 * 7 6 5 9 9 C 1.48358 * 119.83280 * 179.73562 * 8 7 6 10 10 C 1.39745 * 120.41195 * 179.75198 * 9 8 7 11 11 N 1.31905 * 121.14467 * 179.97438 * 10 9 8 12 12 C 1.31520 * 122.12470 * 359.97438 * 11 10 9 13 13 C 1.40779 * 120.67567 * 359.74232 * 12 11 10 14 14 C 1.41437 * 120.60656 * 180.26336 * 13 12 11 15 15 H 1.07995 * 119.99693 * 23.73350 * 14 13 12 16 16 C 1.39928 * 120.00050 * 203.74329 * 14 13 12 17 17 N 1.30835 * 120.00248 * 17.53243 * 16 14 13 18 18 Si 1.86800 * 119.99767 * 197.54621 * 16 14 13 19 19 H 1.48497 * 109.47422 * 89.99792 * 18 16 14 20 20 H 1.48506 * 109.46739 * 209.99266 * 18 16 14 21 21 H 1.48494 * 109.47168 * 329.99029 * 18 16 14 22 22 C 1.39168 * 120.41613 * 359.72182 * 9 8 7 23 23 C 1.38728 * 120.32905 * 359.46051 * 8 7 6 24 24 C 1.37217 * 125.95832 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.46745 * 269.99886 * 1 2 3 26 26 H 1.08996 * 109.47146 * 29.99511 * 1 2 3 27 27 H 1.08996 * 109.47478 * 150.00039 * 1 2 3 28 28 H 1.08001 * 125.65273 * 179.97438 * 4 3 2 29 29 H 1.08001 * 120.00275 * 0.03160 * 6 5 4 30 30 H 1.08006 * 119.71668 * 180.29945 * 7 6 5 31 31 H 1.08005 * 119.42199 * 359.97438 * 10 9 8 32 32 H 1.08000 * 119.66046 * 180.02562 * 12 11 10 33 33 H 0.97000 * 119.99629 * 180.02562 * 17 16 14 34 34 H 1.08001 * 120.95450 * 0.02562 * 22 9 8 35 35 H 1.07998 * 120.18506 * 180.23329 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2873 1.1332 0.0000 4 6 3.5372 0.7707 -0.0005 5 6 3.5995 -0.6437 -0.0003 6 6 4.6595 -1.5615 -0.0012 7 6 4.4024 -2.8983 0.0049 8 6 3.0837 -3.3699 0.0003 9 6 2.8222 -4.8303 0.0011 10 6 1.5112 -5.3142 0.0017 11 7 1.2622 -6.6096 0.0019 12 6 2.2239 -7.5067 0.0011 13 6 3.5750 -7.1112 -0.0055 14 6 4.6081 -8.0772 -0.0119 15 1 4.4157 -9.0709 -0.3885 16 6 5.8792 -7.7454 0.4697 17 7 6.0368 -6.6910 1.2282 18 14 7.3514 -8.8077 0.0296 19 1 7.9676 -8.3047 -1.2244 20 1 8.3487 -8.7512 1.1284 21 1 6.9082 -10.2116 -0.1651 22 6 3.8794 -5.7354 0.0007 23 6 2.0208 -2.4784 0.0006 24 6 2.2708 -1.1107 -0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5138 28 1 4.3862 1.4382 -0.0011 29 1 5.6800 -1.2079 -0.0017 30 1 5.2224 -3.6012 0.0092 31 1 0.6877 -4.6154 0.0020 32 1 1.9746 -8.5575 0.0010 33 1 6.9181 -6.4609 1.5617 34 1 4.9037 -5.3931 0.0001 35 1 1.0049 -2.8447 0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240309134.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:37 Heat of formation + Delta-G solvation = 96.570397 kcal Electronic energy + Delta-G solvation = -20140.703646 eV Core-core repulsion = 17103.730008 eV Total energy + Delta-G solvation = -3036.973637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -42.36272 -40.36251 -38.11044 -35.98250 -34.62831 -33.17893 -32.33369 -31.27254 -29.46047 -27.77050 -27.28694 -24.64119 -24.19803 -22.72220 -22.00308 -21.38540 -19.19090 -18.26784 -17.84528 -17.30828 -16.93241 -16.46559 -16.45144 -15.60970 -15.30489 -15.10360 -14.64970 -14.47493 -14.34106 -13.91587 -13.85532 -13.49877 -13.30292 -13.15313 -12.95230 -12.74878 -12.62527 -12.22383 -11.97321 -11.83052 -11.67589 -11.20024 -11.05076 -10.56143 -10.04266 -9.77577 -8.97170 -8.80355 -8.65529 -6.46049 -0.38149 0.49570 0.87013 1.06752 1.41879 1.47729 1.52841 1.54808 1.71082 2.19733 2.65359 2.94930 3.54033 3.58865 3.72828 3.85367 3.93430 4.12089 4.30986 4.38557 4.41558 4.43957 4.55496 4.64687 4.70111 4.76237 4.83889 4.94182 5.11413 5.18735 5.23444 5.43679 5.52962 5.56489 5.85073 5.88319 5.90706 6.01223 6.10276 6.47103 6.63113 6.73800 6.75688 7.65958 8.23715 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023945 B = 0.004577 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.085916 B = 6116.278087 C = 7201.646641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.416 5.416 3 N -0.283 5.283 4 C 0.080 3.920 5 C -0.202 4.202 6 C -0.029 4.029 7 C -0.162 4.162 8 C 0.018 3.982 9 C -0.093 4.093 10 C -0.032 4.032 11 N -0.480 5.480 12 C -0.039 4.039 13 C 0.036 3.964 14 C -0.479 4.479 15 H 0.087 0.913 16 C 0.039 3.961 17 N -0.814 5.814 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.258 1.258 22 C -0.133 4.133 23 C -0.146 4.146 24 C 0.115 3.885 25 H 0.079 0.921 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.230 0.770 29 H 0.160 0.840 30 H 0.122 0.878 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.294 0.706 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 11.904 -1.887 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.205 5.205 3 N -0.096 5.096 4 C -0.114 4.114 5 C -0.210 4.210 6 C -0.050 4.050 7 C -0.181 4.181 8 C 0.014 3.986 9 C -0.096 4.096 10 C -0.190 4.190 11 N -0.187 5.187 12 C -0.199 4.199 13 C 0.032 3.968 14 C -0.508 4.508 15 H 0.105 0.895 16 C -0.178 4.178 17 N -0.438 5.438 18 Si 0.806 3.194 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.181 1.181 22 C -0.158 4.158 23 C -0.168 4.168 24 C -0.001 4.001 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.113 0.887 28 H 0.247 0.753 29 H 0.178 0.822 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.153 0.847 33 H 0.105 0.895 34 H 0.149 0.851 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.018 12.797 -1.731 13.070 hybrid contribution 1.728 -1.177 0.054 2.091 sum -0.290 11.620 -1.677 11.744 Atomic orbital electron populations 1.22022 0.72310 1.05403 1.04050 1.48569 1.06814 1.00779 1.64345 1.76569 1.02889 1.09714 1.20443 1.24461 0.95518 0.93213 0.98217 1.19284 0.93064 0.94745 1.13869 1.20520 0.99052 0.90704 0.94698 1.20893 0.95909 0.96350 1.04979 1.18705 0.93517 0.91053 0.95316 1.19692 0.94974 0.92295 1.02599 1.22261 0.94480 0.91586 1.10688 1.66953 1.38027 1.03047 1.10715 1.22736 0.88941 0.97804 1.10428 1.18812 0.93874 0.93825 0.90293 1.19856 0.94853 0.99186 1.36909 0.89533 1.26793 1.02821 0.96671 0.91488 1.69819 1.26751 1.24926 1.22345 0.85133 0.76134 0.79064 0.79066 1.18502 1.19164 1.18135 1.21947 0.98546 0.92505 1.02839 1.20024 0.99569 0.88584 1.08603 1.18884 0.91607 0.89523 1.00076 0.90290 0.88075 0.88732 0.75346 0.82207 0.86018 0.83446 0.84682 0.89471 0.85145 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.93 11.45 127.77 1.46 3.39 16 2 N -0.42 -11.51 4.07 -361.08 -1.47 -12.99 16 3 N -0.28 -7.68 12.44 -56.24 -0.70 -8.38 16 4 C 0.08 1.91 12.04 85.77 1.03 2.94 16 5 C -0.20 -5.87 6.17 -21.34 -0.13 -6.00 16 6 C -0.03 -0.84 10.04 22.26 0.22 -0.62 16 7 C -0.16 -5.79 9.35 22.22 0.21 -5.59 16 8 C 0.02 0.70 5.88 -20.03 -0.12 0.58 16 9 C -0.09 -4.30 5.88 -19.99 -0.12 -4.42 16 10 C -0.03 -1.46 10.59 85.05 0.90 -0.56 16 11 N -0.48 -23.71 10.32 -192.74 -1.99 -25.70 16 12 C -0.04 -1.97 10.96 85.36 0.94 -1.04 16 13 C 0.04 1.91 5.59 -21.22 -0.12 1.79 16 14 C -0.48 -24.36 9.08 23.47 0.21 -24.15 16 15 H 0.09 4.20 7.90 -2.91 -0.02 4.17 16 16 C 0.04 1.83 5.18 85.25 0.44 2.27 16 17 N -0.81 -39.34 10.91 21.82 0.24 -39.10 16 18 Si 0.99 35.34 29.59 68.60 2.03 37.37 16 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 20 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 21 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 22 C -0.13 -6.71 8.16 23.15 0.19 -6.52 16 23 C -0.15 -5.00 9.40 22.58 0.21 -4.78 16 24 C 0.11 3.63 6.88 39.13 0.27 3.90 16 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.23 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.12 4.59 6.22 -2.91 -0.02 4.57 16 31 H 0.15 5.74 6.18 -2.91 -0.02 5.73 16 32 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 33 H 0.29 12.71 8.30 -92.71 -0.77 11.95 16 34 H 0.13 6.60 4.40 -2.91 -0.01 6.59 16 35 H 0.14 4.18 6.18 -2.91 -0.02 4.17 16 Total: -1.00 -63.20 303.09 4.84 -58.36 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: 1.13 Total: 29.24 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 5.60 Total: -38.80 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -3.92 Total: -86.17 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Total: -63.20 4.84 -58.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240309134.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.926 kcal (2) G-P(sol) polarization free energy of solvation -63.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds