Wall clock time and date at job start Tue Mar 31 2020 00:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38955 * 119.23070 * 2 1 4 4 C 1.36827 * 119.83302 * 179.97438 * 3 2 1 5 5 C 1.41161 * 118.40271 * 359.73409 * 4 3 2 6 6 C 1.40767 * 120.72592 * 180.26238 * 5 4 3 7 7 H 1.07997 * 119.99625 * 149.19966 * 6 5 4 8 8 C 1.40056 * 120.00226 * 329.20183 * 6 5 4 9 9 N 1.30785 * 120.00049 * 348.60230 * 8 6 5 10 10 Si 1.86800 * 120.00112 * 168.60071 * 8 6 5 11 11 H 1.48492 * 109.47120 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46936 * 209.99779 * 10 8 6 13 13 H 1.48497 * 109.46889 * 329.99608 * 10 8 6 14 14 C 1.42013 * 118.54655 * 0.52554 * 5 4 3 15 15 C 1.47408 * 120.00969 * 179.73597 * 14 5 4 16 16 C 1.39183 * 120.29906 * 310.26209 * 15 14 5 17 17 C 1.38431 * 120.35162 * 180.02562 * 16 15 14 18 18 C 1.37916 * 120.79409 * 0.04349 * 17 16 15 19 19 C 1.39262 * 120.21517 * 359.97438 * 18 17 16 20 20 N 1.37193 * 133.62862 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.98719 * 359.97438 * 20 19 18 22 22 N 1.40035 * 108.03294 * 180.02562 * 20 19 18 23 23 C 1.30312 * 109.68008 * 359.73640 * 22 20 19 24 24 C 1.40650 * 119.79773 * 0.02562 * 19 18 17 25 25 N 1.31648 * 119.23708 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47075 * 270.01777 * 1 2 3 27 27 H 1.08993 * 109.47279 * 30.02586 * 1 2 3 28 28 H 1.09008 * 109.46734 * 150.01945 * 1 2 3 29 29 H 1.08000 * 120.08211 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.79696 * 180.02562 * 4 3 2 31 31 H 0.96999 * 119.99996 * 180.02562 * 9 8 6 32 32 H 1.07997 * 119.82826 * 359.97438 * 16 15 14 33 33 H 1.08000 * 119.60169 * 180.02562 * 17 16 15 34 34 H 1.07996 * 119.89256 * 180.02562 * 18 17 16 35 35 H 1.08003 * 125.64590 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2126 0.0000 4 6 3.5538 1.2270 0.0005 5 6 4.2382 -0.0076 0.0068 6 6 5.6453 -0.0498 0.0132 7 1 6.1587 -0.8678 0.4966 8 6 6.3793 0.9689 -0.6073 9 7 5.7740 1.8343 -1.3787 10 14 8.2230 1.0917 -0.3329 11 1 8.9313 0.2929 -1.3650 12 1 8.6445 2.5123 -0.4309 13 1 8.5587 0.5676 1.0154 14 6 3.4763 -1.2060 0.0009 15 6 4.1580 -2.5130 0.0013 16 6 5.1755 -2.7746 -0.9116 17 6 5.8160 -4.0018 -0.9125 18 6 5.4594 -4.9850 -0.0135 19 6 4.4449 -4.7538 0.9121 20 7 3.8798 -5.5118 1.9062 21 1 4.1265 -6.4202 2.1404 22 7 2.8835 -4.7449 2.5229 23 6 2.8225 -3.5708 1.9607 24 6 3.7828 -3.5130 0.9280 25 7 2.1500 -1.1488 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6344 2.1414 -0.0004 30 1 4.0969 2.1604 0.0010 31 1 6.2824 2.5396 -1.8087 32 1 5.4664 -2.0164 -1.6236 33 1 6.6042 -4.1916 -1.6260 34 1 5.9691 -5.9370 -0.0269 35 1 2.1448 -2.7759 2.2353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240313331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:51 Heat of formation + Delta-G solvation = 102.667674 kcal Electronic energy + Delta-G solvation = -20822.054858 eV Core-core repulsion = 17785.345618 eV Total energy + Delta-G solvation = -3036.709239 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.81942 -38.61655 -36.36286 -34.33986 -32.67813 -31.13214 -30.63863 -29.12124 -28.72230 -27.59865 -24.54316 -22.88027 -21.93547 -21.28006 -20.60425 -20.21142 -17.46985 -17.04535 -16.16967 -15.60367 -14.69963 -14.66641 -14.29805 -14.27975 -14.00840 -13.75928 -13.19795 -12.90484 -12.60005 -12.04779 -11.87280 -11.63317 -11.51633 -11.26719 -11.17584 -11.02148 -11.01092 -10.74523 -10.56768 -10.39249 -9.88001 -9.69806 -9.45184 -8.41818 -8.12646 -8.07305 -7.61650 -7.16654 -6.90418 -4.55870 1.34827 2.10115 2.55028 2.87097 2.97189 3.01918 3.08344 3.13507 3.19248 3.78465 4.39991 4.51500 5.12536 5.23981 5.33243 5.52983 5.58913 5.78572 5.87583 5.99604 6.04649 6.24946 6.29440 6.37651 6.46339 6.50373 6.59092 6.73581 6.87437 6.93050 6.98705 7.03798 7.20205 7.31295 7.46755 7.61080 7.76917 7.80125 7.85746 8.07782 8.31999 8.54236 8.60770 9.51039 9.95995 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.008196 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.071100 B = 3415.535627 C = 5096.840246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.004 4.004 3 C -0.142 4.142 4 C -0.121 4.121 5 C 0.089 3.911 6 C -0.437 4.437 7 H 0.088 0.912 8 C 0.074 3.926 9 N -0.789 5.789 10 Si 0.910 3.090 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.258 1.258 14 C 0.008 3.992 15 C 0.112 3.888 16 C -0.144 4.144 17 C -0.064 4.064 18 C -0.178 4.178 19 C 0.124 3.876 20 N -0.522 5.522 21 H 0.433 0.567 22 N -0.280 5.280 23 C 0.103 3.897 24 C -0.167 4.167 25 N -0.444 5.444 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.125 0.875 31 H 0.285 0.715 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.564 -5.180 1.084 5.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.163 4.163 4 C -0.147 4.147 5 C 0.085 3.915 6 C -0.466 4.466 7 H 0.106 0.894 8 C -0.145 4.145 9 N -0.414 5.414 10 Si 0.734 3.266 11 H -0.191 1.191 12 H -0.200 1.200 13 H -0.182 1.182 14 C -0.129 4.129 15 C 0.108 3.892 16 C -0.164 4.164 17 C -0.084 4.084 18 C -0.200 4.200 19 C 0.009 3.991 20 N -0.237 5.237 21 H 0.276 0.724 22 N -0.095 5.095 23 C -0.093 4.093 24 C -0.175 4.175 25 N -0.152 5.152 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.143 0.857 31 H 0.096 0.904 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.370 -6.498 1.866 6.771 hybrid contribution 1.835 1.108 -0.514 2.204 sum 1.465 -5.390 1.352 5.747 Atomic orbital electron populations 1.20298 0.91460 1.00997 1.00513 1.20283 0.94874 0.88504 1.10987 1.21280 0.95425 0.97206 1.02350 1.21376 0.92597 0.98741 1.01977 1.18312 0.94087 0.90602 0.88521 1.19544 0.90963 1.06560 1.29532 0.89419 1.25978 1.01601 0.93935 0.92956 1.69742 1.38835 1.12399 1.20401 0.86250 0.81481 0.78472 0.80413 1.19062 1.19995 1.18222 1.19419 0.88447 0.91102 1.13975 1.17969 0.91452 0.89670 0.90067 1.21139 0.97773 0.96961 1.00554 1.20815 0.98110 0.92672 0.96840 1.19829 1.00413 1.00696 0.99100 1.18792 0.96347 0.91937 0.92074 1.45907 1.32456 1.15223 1.30130 0.72362 1.76658 1.07773 1.04833 1.20216 1.23790 0.97486 0.94637 0.93359 1.18916 1.01709 0.95070 1.01799 1.66916 1.09391 1.29168 1.09759 0.93067 0.92896 0.92523 0.88271 0.85718 0.90399 0.84772 0.85968 0.86819 0.79708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.15 36.01 0.37 -0.93 16 2 C 0.00 -0.08 6.79 -82.40 -0.56 -0.64 16 3 C -0.14 -3.12 9.64 -39.83 -0.38 -3.51 16 4 C -0.12 -2.91 8.70 -38.98 -0.34 -3.25 16 5 C 0.09 2.21 5.52 -106.39 -0.59 1.63 16 6 C -0.44 -10.50 6.95 -37.95 -0.26 -10.77 16 7 H 0.09 2.09 6.87 -52.49 -0.36 1.73 16 8 C 0.07 1.70 5.25 -17.32 -0.09 1.61 16 9 N -0.79 -18.61 11.06 55.55 0.61 -18.00 16 10 Si 0.91 17.34 29.58 -169.99 -5.03 12.31 16 11 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 12 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 14 C 0.01 0.19 6.25 -82.29 -0.51 -0.33 16 15 C 0.11 2.46 5.11 -104.61 -0.53 1.92 16 16 C -0.14 -2.87 8.07 -39.16 -0.32 -3.19 16 17 C -0.06 -1.05 10.00 -39.63 -0.40 -1.45 16 18 C -0.18 -2.83 10.06 -39.32 -0.40 -3.22 16 19 C 0.12 2.24 7.32 -84.18 -0.62 1.62 16 20 N -0.52 -8.47 7.45 32.35 0.24 -8.23 16 21 H 0.43 5.32 8.96 -182.65 -1.64 3.69 16 22 N -0.28 -5.14 12.58 30.81 0.39 -4.75 16 23 C 0.10 2.01 11.65 -17.10 -0.20 1.81 16 24 C -0.17 -3.43 5.97 -106.68 -0.64 -4.07 16 25 N -0.44 -10.36 9.93 -5.49 -0.05 -10.42 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.13 3.04 6.51 -52.49 -0.34 2.70 16 31 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 32 H 0.13 2.79 7.27 -52.49 -0.38 2.41 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.19 3.50 8.06 -52.48 -0.42 3.07 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -27.23 303.83 -9.54 -36.77 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.81 Total: 10.50 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -5.47 Total: -22.76 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 1.19 Total: -41.39 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.23 -9.54 -36.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240313331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.439 kcal (2) G-P(sol) polarization free energy of solvation -27.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds