Wall clock time and date at job start Tue Mar 31 2020 00:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38955 * 119.23070 * 2 1 4 4 C 1.36827 * 119.83302 * 179.97438 * 3 2 1 5 5 C 1.41161 * 118.40271 * 359.73409 * 4 3 2 6 6 C 1.40767 * 120.72592 * 180.26238 * 5 4 3 7 7 H 1.07997 * 119.99625 * 149.19966 * 6 5 4 8 8 C 1.40056 * 120.00226 * 329.20183 * 6 5 4 9 9 N 1.30785 * 120.00049 * 348.60230 * 8 6 5 10 10 Si 1.86800 * 120.00112 * 168.60071 * 8 6 5 11 11 H 1.48492 * 109.47120 * 89.99896 * 10 8 6 12 12 H 1.48503 * 109.46936 * 209.99779 * 10 8 6 13 13 H 1.48497 * 109.46889 * 329.99608 * 10 8 6 14 14 C 1.42013 * 118.54655 * 0.52554 * 5 4 3 15 15 C 1.47408 * 120.00969 * 179.73597 * 14 5 4 16 16 C 1.39183 * 120.29906 * 310.26209 * 15 14 5 17 17 C 1.38431 * 120.35162 * 180.02562 * 16 15 14 18 18 C 1.37916 * 120.79409 * 0.04349 * 17 16 15 19 19 C 1.39262 * 120.21517 * 359.97438 * 18 17 16 20 20 N 1.37193 * 133.62862 * 180.02562 * 19 18 17 21 21 H 0.96999 * 125.98719 * 359.97438 * 20 19 18 22 22 N 1.40035 * 108.03294 * 180.02562 * 20 19 18 23 23 C 1.30312 * 109.68008 * 359.73640 * 22 20 19 24 24 C 1.40650 * 119.79773 * 0.02562 * 19 18 17 25 25 N 1.31648 * 119.23708 * 179.97438 * 2 1 3 26 26 H 1.08999 * 109.47075 * 270.01777 * 1 2 3 27 27 H 1.08993 * 109.47279 * 30.02586 * 1 2 3 28 28 H 1.09008 * 109.46734 * 150.01945 * 1 2 3 29 29 H 1.08000 * 120.08211 * 359.97438 * 3 2 1 30 30 H 1.07998 * 120.79696 * 180.02562 * 4 3 2 31 31 H 0.96999 * 119.99996 * 180.02562 * 9 8 6 32 32 H 1.07997 * 119.82826 * 359.97438 * 16 15 14 33 33 H 1.08000 * 119.60169 * 180.02562 * 17 16 15 34 34 H 1.07996 * 119.89256 * 180.02562 * 18 17 16 35 35 H 1.08003 * 125.64590 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1856 1.2126 0.0000 4 6 3.5538 1.2270 0.0005 5 6 4.2382 -0.0076 0.0068 6 6 5.6453 -0.0498 0.0132 7 1 6.1587 -0.8678 0.4966 8 6 6.3793 0.9689 -0.6073 9 7 5.7740 1.8343 -1.3787 10 14 8.2230 1.0917 -0.3329 11 1 8.9313 0.2929 -1.3650 12 1 8.6445 2.5123 -0.4309 13 1 8.5587 0.5676 1.0154 14 6 3.4763 -1.2060 0.0009 15 6 4.1580 -2.5130 0.0013 16 6 5.1755 -2.7746 -0.9116 17 6 5.8160 -4.0018 -0.9125 18 6 5.4594 -4.9850 -0.0135 19 6 4.4449 -4.7538 0.9121 20 7 3.8798 -5.5118 1.9062 21 1 4.1265 -6.4202 2.1404 22 7 2.8835 -4.7449 2.5229 23 6 2.8225 -3.5708 1.9607 24 6 3.7828 -3.5130 0.9280 25 7 2.1500 -1.1488 0.0005 26 1 -0.3633 0.0003 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5136 29 1 1.6344 2.1414 -0.0004 30 1 4.0969 2.1604 0.0010 31 1 6.2824 2.5396 -1.8087 32 1 5.4664 -2.0164 -1.6236 33 1 6.6042 -4.1916 -1.6260 34 1 5.9691 -5.9370 -0.0269 35 1 2.1448 -2.7759 2.2353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240313331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:50 Heat of formation + Delta-G solvation = 87.914346 kcal Electronic energy + Delta-G solvation = -20822.694610 eV Core-core repulsion = 17785.345618 eV Total energy + Delta-G solvation = -3037.348992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.25446 -40.32495 -37.81079 -36.05897 -34.19897 -32.79281 -32.24790 -30.57350 -30.19822 -29.23573 -26.17857 -24.46205 -23.38745 -22.88676 -22.20464 -21.75907 -19.21808 -18.51700 -17.61212 -17.28607 -16.36751 -16.14501 -15.78224 -15.72838 -15.51529 -15.33863 -14.75904 -14.34845 -14.19662 -13.71168 -13.46754 -13.19078 -13.00885 -12.82927 -12.64603 -12.57485 -12.46912 -12.28290 -12.05801 -11.87289 -11.53990 -11.18227 -11.11668 -10.16181 -9.88975 -9.56494 -9.25578 -8.74739 -8.53542 -6.34960 -0.12308 0.60641 0.88337 1.14499 1.40705 1.50041 1.54459 1.65735 1.89499 2.19967 2.74003 2.97322 3.64248 3.65091 3.85703 4.04814 4.16421 4.36018 4.41681 4.54937 4.56239 4.66126 4.83977 4.97121 5.00490 5.02972 5.08093 5.14867 5.23830 5.30816 5.38196 5.49766 5.65517 5.77910 5.85613 5.96397 6.09991 6.12891 6.48905 6.53905 6.70698 6.77654 6.84085 7.75602 8.28171 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013044 B = 0.008196 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.071100 B = 3415.535627 C = 5096.840246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.013 4.013 3 C -0.147 4.147 4 C -0.143 4.143 5 C 0.060 3.940 6 C -0.456 4.456 7 H 0.080 0.920 8 C 0.040 3.960 9 N -0.821 5.821 10 Si 0.975 3.025 11 H -0.256 1.256 12 H -0.268 1.268 13 H -0.262 1.262 14 C 0.000 4.000 15 C 0.075 3.925 16 C -0.151 4.151 17 C -0.061 4.061 18 C -0.155 4.155 19 C 0.118 3.882 20 N -0.502 5.502 21 H 0.452 0.548 22 N -0.279 5.279 23 C 0.085 3.915 24 C -0.190 4.190 25 N -0.460 5.460 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.126 0.874 30 H 0.113 0.887 31 H 0.291 0.709 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.472 -7.062 1.050 7.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.155 4.155 3 C -0.167 4.167 4 C -0.169 4.169 5 C 0.055 3.945 6 C -0.485 4.485 7 H 0.098 0.902 8 C -0.176 4.176 9 N -0.446 5.446 10 Si 0.796 3.204 11 H -0.181 1.181 12 H -0.192 1.192 13 H -0.186 1.186 14 C -0.137 4.137 15 C 0.071 3.929 16 C -0.172 4.172 17 C -0.081 4.081 18 C -0.177 4.177 19 C 0.001 3.999 20 N -0.220 5.220 21 H 0.300 0.700 22 N -0.094 5.094 23 C -0.110 4.110 24 C -0.198 4.198 25 N -0.169 5.169 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.144 0.856 30 H 0.131 0.869 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.519 -8.404 1.839 8.618 hybrid contribution 1.469 1.565 -0.494 2.203 sum 1.988 -6.838 1.345 7.247 Atomic orbital electron populations 1.20351 0.88161 1.02184 1.02009 1.21075 0.97172 0.88074 1.09226 1.21577 0.94875 0.98649 1.01603 1.21409 0.93685 0.98251 1.03596 1.18648 0.94952 0.91301 0.89573 1.19559 0.90986 1.07300 1.30690 0.90182 1.26692 1.05551 0.93170 0.92153 1.69789 1.40532 1.13089 1.21187 0.85279 0.76305 0.78739 0.80072 1.18065 1.19222 1.18584 1.19847 0.88813 0.92099 1.12939 1.18047 0.93120 0.89584 0.92163 1.21144 0.97837 0.98193 1.00025 1.21185 0.98280 0.91114 0.97537 1.20328 0.98595 1.02035 0.96714 1.19042 0.96789 0.91210 0.92828 1.45884 1.31282 1.15749 1.29098 0.70002 1.76589 1.08209 1.04506 1.20127 1.23736 0.98094 0.95157 0.93992 1.19086 1.02621 0.96036 1.02072 1.67045 1.09395 1.29899 1.10547 0.91310 0.90578 0.92428 0.85566 0.86886 0.89780 0.86772 0.82124 0.82170 0.80273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.32 10.15 71.24 0.72 -1.60 16 2 C -0.01 -0.58 6.79 42.76 0.29 -0.29 16 3 C -0.15 -6.57 9.64 22.11 0.21 -6.36 16 4 C -0.14 -7.22 8.70 22.66 0.20 -7.02 16 5 C 0.06 3.10 5.52 -21.01 -0.12 2.99 16 6 C -0.46 -22.90 6.95 23.33 0.16 -22.74 16 7 H 0.08 4.00 6.87 -2.91 -0.02 3.98 16 8 C 0.04 1.89 5.25 85.29 0.45 2.34 16 9 N -0.82 -40.00 11.06 21.85 0.24 -39.75 16 10 Si 0.98 35.86 29.58 68.60 2.03 37.88 16 11 H -0.26 -8.96 7.11 99.48 0.71 -8.26 16 12 H -0.27 -9.43 7.11 99.48 0.71 -8.72 16 13 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 14 C 0.00 0.01 6.25 42.36 0.26 0.27 16 15 C 0.07 3.35 5.11 -19.85 -0.10 3.25 16 16 C -0.15 -6.08 8.07 22.54 0.18 -5.90 16 17 C -0.06 -1.84 10.00 22.24 0.22 -1.62 16 18 C -0.15 -4.32 10.06 22.44 0.23 -4.10 16 19 C 0.12 3.98 7.32 39.14 0.29 4.27 16 20 N -0.50 -15.01 7.45 -51.57 -0.38 -15.40 16 21 H 0.45 9.53 8.96 -213.36 -1.91 7.61 16 22 N -0.28 -9.92 12.58 -56.45 -0.71 -10.63 16 23 C 0.09 3.36 11.65 85.63 1.00 4.36 16 24 C -0.19 -7.82 5.97 -21.20 -0.13 -7.95 16 25 N -0.46 -22.11 9.93 -171.28 -1.70 -23.81 16 26 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 28 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 30 H 0.11 5.82 6.51 -2.91 -0.02 5.80 16 31 H 0.29 12.84 8.29 -92.71 -0.77 12.08 16 32 H 0.11 4.95 7.27 -2.91 -0.02 4.93 16 33 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 34 H 0.16 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.18 7.06 8.06 -2.91 -0.02 7.04 16 Total: -1.00 -61.43 303.83 2.57 -58.86 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.77 Total: 32.93 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 3.87 Total: -40.09 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -2.55 Total: -89.59 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.88 kcal Total: -61.43 2.57 -58.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240313331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.777 kcal (2) G-P(sol) polarization free energy of solvation -61.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds