Wall clock time and date at job start Tue Mar 31 2020 01:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35950 * 126.36958 * 2 1 4 4 N 1.30214 * 110.13541 * 179.97438 * 3 2 1 5 5 C 1.35577 * 109.71082 * 0.02562 * 4 3 2 6 6 C 1.40063 * 133.38327 * 179.97438 * 5 4 3 7 7 C 1.36173 * 120.08692 * 179.68983 * 6 5 4 8 8 C 1.40232 * 120.51433 * 0.63122 * 7 6 5 9 9 C 1.47639 * 119.94470 * 179.67260 * 8 7 6 10 10 N 1.32667 * 119.99911 * 136.01819 * 9 8 7 11 11 C 1.31717 * 121.71060 * 179.72577 * 10 9 8 12 12 C 1.38901 * 121.51265 * 0.59926 * 11 10 9 13 13 C 1.36862 * 119.81582 * 359.42044 * 12 11 10 14 14 C 1.41126 * 118.40774 * 0.27081 * 13 12 11 15 15 C 1.40827 * 120.72622 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00054 * 151.39058 * 15 14 13 17 17 C 1.40048 * 119.99723 * 331.39088 * 15 14 13 18 18 N 1.30794 * 119.99522 * 161.07883 * 17 15 14 19 19 Si 1.86794 * 120.00237 * 341.07998 * 17 15 14 20 20 H 1.48496 * 109.47055 * 95.20976 * 19 17 15 21 21 H 1.48494 * 109.47157 * 215.21303 * 19 17 15 22 22 H 1.48501 * 109.47217 * 335.20886 * 19 17 15 23 23 C 1.39458 * 120.11455 * 359.40449 * 8 7 6 24 24 C 1.38189 * 126.36856 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46960 * 270.02885 * 1 2 3 26 26 H 1.09000 * 109.47312 * 30.02733 * 1 2 3 27 27 H 1.08998 * 109.46962 * 150.03204 * 1 2 3 28 28 H 1.07995 * 124.92959 * 359.97229 * 3 2 1 29 29 H 1.08004 * 119.95469 * 0.02562 * 6 5 4 30 30 H 1.07998 * 119.74364 * 180.30457 * 7 6 5 31 31 H 1.07995 * 119.24163 * 180.31671 * 11 10 9 32 32 H 1.08006 * 120.08907 * 179.68882 * 12 11 10 33 33 H 1.08007 * 120.79594 * 180.29819 * 13 12 11 34 34 H 0.97002 * 119.99555 * 179.97438 * 18 17 15 35 35 H 1.08004 * 120.21558 * 180.25133 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0947 0.0000 4 7 3.5214 0.7306 0.0005 5 6 3.6036 -0.6226 0.0004 6 6 4.6780 -1.5212 0.0003 7 6 4.4458 -2.8629 0.0065 8 6 3.1340 -3.3586 -0.0003 9 6 2.8968 -4.8158 -0.0008 10 7 1.9699 -5.3372 0.7923 11 6 1.7265 -6.6315 0.8152 12 6 2.4382 -7.5182 0.0173 13 6 3.4090 -7.0474 -0.8247 14 6 3.6608 -5.6590 -0.8494 15 6 4.6482 -5.1217 -1.6976 16 1 4.5499 -4.1125 -2.0695 17 6 5.7578 -5.8961 -2.0590 18 7 6.4703 -5.5693 -3.1060 19 14 6.2201 -7.3957 -1.0457 20 1 5.6243 -8.6100 -1.6585 21 1 7.6982 -7.5331 -1.0109 22 1 5.7052 -7.2361 0.3380 23 6 2.0531 -2.4774 -0.0010 24 6 2.2845 -1.1127 0.0005 25 1 -0.3633 0.0005 1.0277 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5133 28 1 1.9249 2.1176 -0.0004 29 1 5.6921 -1.1493 0.0008 30 1 5.2784 -3.5508 0.0114 31 1 0.9592 -7.0125 1.4727 32 1 2.2230 -8.5758 0.0581 33 1 3.9686 -7.7221 -1.4556 34 1 7.2390 -6.1055 -3.3560 35 1 1.0421 -2.8573 -0.0022 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240315655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:25 Heat of formation + Delta-G solvation = 84.310914 kcal Electronic energy + Delta-G solvation = -20605.870054 eV Core-core repulsion = 17568.364805 eV Total energy + Delta-G solvation = -3037.505248 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.93918 -40.58627 -38.04193 -35.94192 -35.11677 -33.26876 -32.77617 -31.36891 -29.59455 -27.79856 -27.28947 -24.92619 -23.50486 -23.29820 -22.03576 -21.38607 -19.45693 -18.44350 -17.95299 -17.41842 -17.16398 -16.63748 -16.34063 -15.84609 -15.30686 -15.02712 -14.89841 -14.69609 -14.28190 -14.05541 -14.01020 -13.83645 -13.46772 -13.27814 -13.05235 -12.70944 -12.43037 -12.35891 -12.04572 -11.72911 -11.36714 -11.24634 -10.88954 -10.33152 -10.02435 -9.80465 -9.16909 -8.97568 -8.76920 -6.51917 -0.11649 0.52269 0.70346 0.90378 1.23460 1.37844 1.45821 1.80760 1.95252 2.05996 2.59006 2.94807 3.43029 3.52086 3.68015 3.83173 3.97180 4.20823 4.27403 4.37404 4.46774 4.52613 4.55990 4.58449 4.65561 4.72788 4.80001 4.84973 5.03668 5.20696 5.34942 5.47884 5.53802 5.56575 5.69786 5.86140 5.94855 5.99828 6.24055 6.35892 6.56028 6.65166 6.97124 7.57016 8.05784 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.005913 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.111008 B = 4734.137878 C = 5741.716905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.497 5.497 3 C 0.266 3.734 4 N -0.539 5.539 5 C 0.017 3.983 6 C -0.087 4.087 7 C -0.100 4.100 8 C 0.009 3.991 9 C 0.020 3.980 10 N -0.459 5.459 11 C -0.036 4.036 12 C -0.118 4.118 13 C -0.220 4.220 14 C 0.043 3.957 15 C -0.441 4.441 16 H 0.072 0.928 17 C 0.054 3.946 18 N -0.821 5.821 19 Si 0.958 3.042 20 H -0.250 1.250 21 H -0.273 1.273 22 H -0.259 1.259 23 C -0.102 4.102 24 C 0.033 3.967 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.265 0.735 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.299 0.701 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 6.030 4.847 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.187 5.187 3 C -0.019 4.019 4 N -0.259 5.259 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.121 4.121 8 C 0.006 3.994 9 C -0.119 4.119 10 N -0.166 5.166 11 C -0.195 4.195 12 C -0.137 4.137 13 C -0.245 4.245 14 C 0.039 3.961 15 C -0.469 4.469 16 H 0.090 0.910 17 C -0.165 4.165 18 N -0.445 5.445 19 Si 0.781 3.219 20 H -0.175 1.175 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.124 4.124 24 C -0.076 4.076 25 H 0.105 0.895 26 H 0.143 0.857 27 H 0.095 0.905 28 H 0.280 0.720 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.896 7.102 5.164 12.499 hybrid contribution 0.361 -1.767 -0.642 1.914 sum -8.535 5.335 4.522 11.034 Atomic orbital electron populations 1.22287 0.73527 1.06041 1.04736 1.45508 1.08678 1.04307 1.60209 1.26260 0.84226 0.94828 0.96625 1.70294 1.20702 1.10504 1.24392 1.19258 0.92706 0.90851 1.07217 1.19949 0.97774 0.91145 1.01779 1.20811 0.96645 0.94691 0.99909 1.18172 0.92545 0.90479 0.98154 1.19622 1.00509 0.92507 0.99288 1.67185 1.14825 1.15635 1.18973 1.22423 1.04395 0.88229 1.04448 1.21781 0.95247 1.01302 0.95381 1.21328 1.03097 0.95220 1.04861 1.18593 0.93584 0.92647 0.91319 1.19377 1.03927 1.01255 1.22332 0.90988 1.26832 0.95232 1.00267 0.94131 1.69690 1.15434 1.38779 1.20586 0.85606 0.77419 0.78316 0.80598 1.17545 1.19913 1.18257 1.19904 0.98782 0.88522 1.05178 1.18789 0.91657 0.89671 1.07475 0.89469 0.85709 0.90549 0.71978 0.85020 0.85864 0.81957 0.83584 0.86793 0.88989 0.86021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 11.18 127.77 1.43 2.56 16 2 N -0.50 -13.08 3.21 -543.69 -1.74 -14.83 16 3 C 0.27 6.49 12.50 180.05 2.25 8.74 16 4 N -0.54 -18.81 11.27 -191.75 -2.16 -20.97 16 5 C 0.02 0.70 7.23 39.62 0.29 0.99 16 6 C -0.09 -3.64 10.03 22.23 0.22 -3.41 16 7 C -0.10 -4.53 7.76 22.27 0.17 -4.35 16 8 C 0.01 0.42 5.25 -20.02 -0.11 0.32 16 9 C 0.02 0.96 6.42 42.42 0.27 1.23 16 10 N -0.46 -20.88 10.15 -182.97 -1.86 -22.74 16 11 C -0.04 -1.42 11.16 84.87 0.95 -0.47 16 12 C -0.12 -4.58 10.03 22.11 0.22 -4.35 16 13 C -0.22 -9.94 7.26 22.66 0.16 -9.77 16 14 C 0.04 2.18 5.12 -21.02 -0.11 2.08 16 15 C -0.44 -23.37 7.22 23.34 0.17 -23.20 16 16 H 0.07 4.18 6.68 -2.91 -0.02 4.16 16 17 C 0.05 2.71 5.41 85.29 0.46 3.17 16 18 N -0.82 -42.19 13.93 21.85 0.30 -41.89 16 19 Si 0.96 40.02 24.53 68.60 1.68 41.71 16 20 H -0.25 -9.69 6.67 99.48 0.66 -9.03 16 21 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.26 -11.33 6.87 99.48 0.68 -10.65 16 23 C -0.10 -4.17 9.65 22.61 0.22 -3.95 16 24 C 0.03 1.22 6.86 38.79 0.27 1.49 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.26 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 30 H 0.12 5.86 6.74 -2.91 -0.02 5.84 16 31 H 0.16 5.15 8.06 -2.91 -0.02 5.13 16 32 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.11 4.98 4.70 -2.91 -0.01 4.96 16 34 H 0.30 13.71 8.30 -92.71 -0.77 12.94 16 35 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -68.27 297.95 4.15 -64.12 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.06 Total: 23.53 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 6.87 Total: -28.94 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -5.46 Total: -100.42 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 1.68 Total: 41.71 kcal Total: -68.27 4.15 -64.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240315655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.433 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds