Wall clock time and date at job start Tue Mar 31 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35953 * 126.36536 * 2 1 4 4 N 1.30210 * 110.13715 * 179.97438 * 3 2 1 5 5 C 1.35602 * 109.70299 * 359.97438 * 4 3 2 6 6 C 1.40040 * 133.39504 * 180.02562 * 5 4 3 7 7 C 1.36187 * 120.08153 * 179.77861 * 6 5 4 8 8 C 1.40176 * 120.52227 * 0.47882 * 7 6 5 9 9 C 1.47795 * 119.93562 * 179.77634 * 8 7 6 10 10 C 1.39981 * 119.46051 * 359.72554 * 9 8 7 11 11 C 1.36549 * 119.46817 * 180.02562 * 10 9 8 12 12 C 1.41341 * 118.42033 * 0.02562 * 11 10 9 13 13 C 1.41005 * 120.54889 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00321 * 330.28859 * 13 12 11 15 15 C 1.39994 * 119.99717 * 150.28139 * 13 12 11 16 16 N 1.30810 * 119.99958 * 161.80585 * 15 13 12 17 17 Si 1.86803 * 120.00138 * 341.80100 * 15 13 12 18 18 H 1.48506 * 109.46768 * 95.41300 * 17 15 13 19 19 H 1.48498 * 109.47170 * 215.40646 * 17 15 13 20 20 H 1.48494 * 109.47361 * 335.41399 * 17 15 13 21 21 C 1.40976 * 118.90056 * 359.95431 * 12 11 10 22 22 N 1.31236 * 120.40621 * 0.04315 * 21 12 11 23 23 C 1.39383 * 120.12444 * 359.50197 * 8 7 6 24 24 C 1.38174 * 126.36865 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46786 * 270.04379 * 1 2 3 26 26 H 1.08999 * 109.46729 * 30.04828 * 1 2 3 27 27 H 1.09002 * 109.46673 * 150.04861 * 1 2 3 28 28 H 1.08005 * 124.93667 * 359.97438 * 3 2 1 29 29 H 1.08007 * 119.95782 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.74539 * 180.23803 * 7 6 5 31 31 H 1.08002 * 120.26703 * 359.74912 * 10 9 8 32 32 H 1.07997 * 120.79156 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00036 * 180.02562 * 16 15 13 34 34 H 1.07998 * 119.79307 * 180.02562 * 21 12 11 35 35 H 1.08003 * 120.21111 * 180.23336 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0948 0.0000 4 7 3.5214 0.7309 0.0005 5 6 3.6036 -0.6226 0.0015 6 6 4.6776 -1.5213 0.0028 7 6 4.4449 -2.8631 0.0081 8 6 3.1335 -3.3583 0.0022 9 6 2.8959 -4.8170 0.0030 10 6 3.9882 -5.6924 0.0040 11 6 3.7689 -7.0402 0.0042 12 6 2.4339 -7.5045 0.0030 13 6 2.1559 -8.8869 0.0026 14 1 2.8462 -9.5765 -0.4603 15 6 0.9850 -9.3655 0.6026 16 7 0.5410 -10.5603 0.3090 17 14 0.0569 -8.2978 1.8225 18 1 -1.0323 -7.5743 1.1186 19 1 -0.5252 -9.1541 2.8870 20 1 0.9901 -7.3164 2.4316 21 6 1.3849 -6.5626 0.0025 22 7 1.6470 -5.2767 0.0024 23 6 2.0532 -2.4775 0.0013 24 6 2.2844 -1.1126 0.0005 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3633 -0.8905 -0.5131 28 1 1.9249 2.1178 -0.0004 29 1 5.6917 -1.1497 0.0037 30 1 5.2772 -3.5513 0.0130 31 1 4.9963 -5.3050 0.0000 32 1 4.5957 -7.7349 0.0045 33 1 -0.2705 -10.8918 0.7244 34 1 0.3595 -6.9014 0.0020 35 1 1.0422 -2.8575 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240316180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:28 Heat of formation + Delta-G solvation = 98.431796 kcal Electronic energy + Delta-G solvation = -20020.287433 eV Core-core repulsion = 16983.394512 eV Total energy + Delta-G solvation = -3036.892921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.81737 -38.92021 -36.83417 -34.27169 -33.91037 -31.66036 -31.10844 -30.13976 -28.66885 -26.89692 -25.37815 -23.32553 -22.37127 -21.71720 -20.48813 -20.27854 -17.91228 -17.04375 -16.93696 -15.93957 -15.65690 -15.57023 -14.71492 -14.35109 -13.88306 -13.63159 -13.47974 -13.31888 -13.12476 -12.87269 -12.71989 -12.69662 -12.06212 -11.57071 -11.42903 -11.24156 -11.10942 -10.90995 -10.60277 -10.18826 -10.15541 -9.72609 -9.55807 -8.73384 -8.46672 -8.27224 -7.96375 -7.29014 -7.24145 -4.73374 1.11359 1.79325 2.36559 2.54480 2.75807 2.93950 3.03599 3.11404 3.21448 3.74900 4.11815 4.46181 4.51211 4.65694 4.74847 5.05225 5.14961 5.28330 5.31022 5.40499 5.61695 5.70483 5.86217 5.88056 5.93537 6.17931 6.26931 6.43451 6.49462 6.67807 6.76882 6.81433 6.94210 7.04835 7.15145 7.31529 7.37126 7.44157 7.74251 7.95019 8.06992 8.25309 8.38704 9.26074 9.70295 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.004300 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.845513 B = 6509.496400 C = 7316.649855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.500 5.500 3 C 0.237 3.763 4 N -0.497 5.497 5 C 0.020 3.980 6 C -0.065 4.065 7 C -0.128 4.128 8 C 0.036 3.964 9 C -0.007 4.007 10 C -0.100 4.100 11 C -0.184 4.184 12 C 0.046 3.954 13 C -0.414 4.414 14 H 0.098 0.902 15 C 0.081 3.919 16 N -0.783 5.783 17 Si 0.911 3.089 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.244 1.244 21 C -0.026 4.026 22 N -0.436 5.436 23 C -0.114 4.114 24 C 0.056 3.944 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.207 0.793 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.292 0.708 34 H 0.132 0.868 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 14.341 0.787 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.192 5.192 3 C -0.048 4.048 4 N -0.216 5.216 5 C -0.097 4.097 6 C -0.084 4.084 7 C -0.149 4.149 8 C 0.033 3.967 9 C -0.140 4.140 10 C -0.120 4.120 11 C -0.208 4.208 12 C 0.041 3.959 13 C -0.441 4.441 14 H 0.116 0.884 15 C -0.141 4.141 16 N -0.405 5.405 17 Si 0.737 3.263 18 H -0.188 1.188 19 H -0.211 1.211 20 H -0.167 1.167 21 C -0.192 4.192 22 N -0.144 5.144 23 C -0.136 4.136 24 C -0.052 4.052 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.223 0.777 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.149 0.851 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.050 15.201 0.785 15.258 hybrid contribution -0.695 -0.888 0.481 1.226 sum -1.746 14.314 1.266 14.475 Atomic orbital electron populations 1.21917 0.76507 1.04417 1.03231 1.45184 1.06992 1.05661 1.61323 1.25106 0.85432 0.93084 1.01148 1.70289 1.18168 1.11559 1.21579 1.18995 0.92314 0.89839 1.08572 1.19788 0.96863 0.91283 1.00506 1.20734 0.96407 0.94521 1.03247 1.18309 0.91660 0.91156 0.95582 1.18710 0.88881 0.90778 1.15640 1.21297 0.98052 0.94033 0.98658 1.21042 0.96314 0.94387 1.09099 1.18703 0.92437 0.94533 0.90258 1.19583 1.03965 0.91808 1.28755 0.88410 1.26309 0.95893 0.95470 0.96470 1.69661 1.19409 1.17446 1.33959 0.86298 0.80339 0.79880 0.79816 1.18767 1.21059 1.16738 1.22440 0.98127 0.87883 1.10746 1.66917 1.22237 1.17240 1.07965 1.19952 1.00175 0.87593 1.05878 1.18875 0.90873 0.89295 1.06139 0.91025 0.89751 0.89696 0.77690 0.85813 0.85279 0.87147 0.86918 0.89671 0.85061 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 11.18 59.85 0.67 1.38 16 2 N -0.50 -6.60 3.21 -123.19 -0.40 -6.99 16 3 C 0.24 2.95 12.50 -89.78 -1.12 1.83 16 4 N -0.50 -7.99 11.27 -11.96 -0.13 -8.12 16 5 C 0.02 0.35 7.23 -84.59 -0.61 -0.26 16 6 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 7 C -0.13 -2.14 9.33 -39.59 -0.37 -2.51 16 8 C 0.04 0.69 5.88 -104.84 -0.62 0.07 16 9 C -0.01 -0.15 6.73 -82.76 -0.56 -0.70 16 10 C -0.10 -2.06 9.38 -39.54 -0.37 -2.43 16 11 C -0.18 -4.03 9.87 -39.01 -0.39 -4.42 16 12 C 0.05 1.11 5.12 -106.63 -0.55 0.57 16 13 C -0.41 -10.33 9.58 -37.88 -0.36 -10.69 16 14 H 0.10 2.51 8.06 -52.49 -0.42 2.09 16 15 C 0.08 1.96 5.41 -17.33 -0.09 1.87 16 16 N -0.78 -19.10 13.93 55.55 0.77 -18.33 16 17 Si 0.91 19.53 24.52 -169.99 -4.17 15.36 16 18 H -0.26 -5.47 6.71 56.52 0.38 -5.09 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.24 -5.55 6.86 56.52 0.39 -5.17 16 21 C -0.03 -0.63 8.36 -16.77 -0.14 -0.77 16 22 N -0.44 -10.25 9.37 -9.12 -0.09 -10.34 16 23 C -0.11 -2.10 9.56 -39.08 -0.37 -2.47 16 24 C 0.06 0.95 6.87 -83.99 -0.58 0.37 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.21 1.49 8.06 -52.48 -0.42 1.06 16 29 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 30 H 0.13 1.88 6.11 -52.48 -0.32 1.56 16 31 H 0.11 1.88 6.12 -52.49 -0.32 1.55 16 32 H 0.11 2.25 8.06 -52.49 -0.42 1.82 16 33 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 34 H 0.13 3.10 4.72 -52.49 -0.25 2.85 16 35 H 0.13 2.38 7.51 -52.48 -0.39 1.99 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -29.61 299.41 -8.77 -38.38 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.41 Total: 5.15 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -5.85 Total: -19.62 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.16 Total: -43.78 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.17 Total: 15.36 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.61 -8.77 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240316180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.812 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds