Wall clock time and date at job start Tue Mar 31 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35953 * 126.36536 * 2 1 4 4 N 1.30210 * 110.13715 * 179.97438 * 3 2 1 5 5 C 1.35602 * 109.70299 * 359.97438 * 4 3 2 6 6 C 1.40040 * 133.39504 * 180.02562 * 5 4 3 7 7 C 1.36187 * 120.08153 * 179.77861 * 6 5 4 8 8 C 1.40176 * 120.52227 * 0.47882 * 7 6 5 9 9 C 1.47795 * 119.93562 * 179.77634 * 8 7 6 10 10 C 1.39981 * 119.46051 * 359.72554 * 9 8 7 11 11 C 1.36549 * 119.46817 * 180.02562 * 10 9 8 12 12 C 1.41341 * 118.42033 * 0.02562 * 11 10 9 13 13 C 1.41005 * 120.54889 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00321 * 330.28859 * 13 12 11 15 15 C 1.39994 * 119.99717 * 150.28139 * 13 12 11 16 16 N 1.30810 * 119.99958 * 161.80585 * 15 13 12 17 17 Si 1.86803 * 120.00138 * 341.80100 * 15 13 12 18 18 H 1.48506 * 109.46768 * 95.41300 * 17 15 13 19 19 H 1.48498 * 109.47170 * 215.40646 * 17 15 13 20 20 H 1.48494 * 109.47361 * 335.41399 * 17 15 13 21 21 C 1.40976 * 118.90056 * 359.95431 * 12 11 10 22 22 N 1.31236 * 120.40621 * 0.04315 * 21 12 11 23 23 C 1.39383 * 120.12444 * 359.50197 * 8 7 6 24 24 C 1.38174 * 126.36865 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.46786 * 270.04379 * 1 2 3 26 26 H 1.08999 * 109.46729 * 30.04828 * 1 2 3 27 27 H 1.09002 * 109.46673 * 150.04861 * 1 2 3 28 28 H 1.08005 * 124.93667 * 359.97438 * 3 2 1 29 29 H 1.08007 * 119.95782 * 0.02562 * 6 5 4 30 30 H 1.08003 * 119.74539 * 180.23803 * 7 6 5 31 31 H 1.08002 * 120.26703 * 359.74912 * 10 9 8 32 32 H 1.07997 * 120.79156 * 179.97438 * 11 10 9 33 33 H 0.97001 * 120.00036 * 180.02562 * 16 15 13 34 34 H 1.07998 * 119.79307 * 180.02562 * 21 12 11 35 35 H 1.08003 * 120.21111 * 180.23336 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0948 0.0000 4 7 3.5214 0.7309 0.0005 5 6 3.6036 -0.6226 0.0015 6 6 4.6776 -1.5213 0.0028 7 6 4.4449 -2.8631 0.0081 8 6 3.1335 -3.3583 0.0022 9 6 2.8959 -4.8170 0.0030 10 6 3.9882 -5.6924 0.0040 11 6 3.7689 -7.0402 0.0042 12 6 2.4339 -7.5045 0.0030 13 6 2.1559 -8.8869 0.0026 14 1 2.8462 -9.5765 -0.4603 15 6 0.9850 -9.3655 0.6026 16 7 0.5410 -10.5603 0.3090 17 14 0.0569 -8.2978 1.8225 18 1 -1.0323 -7.5743 1.1186 19 1 -0.5252 -9.1541 2.8870 20 1 0.9901 -7.3164 2.4316 21 6 1.3849 -6.5626 0.0025 22 7 1.6470 -5.2767 0.0024 23 6 2.0532 -2.4775 0.0013 24 6 2.2844 -1.1126 0.0005 25 1 -0.3633 0.0008 1.0277 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3633 -0.8905 -0.5131 28 1 1.9249 2.1178 -0.0004 29 1 5.6917 -1.1497 0.0037 30 1 5.2772 -3.5513 0.0130 31 1 4.9963 -5.3050 0.0000 32 1 4.5957 -7.7349 0.0045 33 1 -0.2705 -10.8918 0.7244 34 1 0.3595 -6.9014 0.0020 35 1 1.0422 -2.8575 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240316180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:27 Heat of formation + Delta-G solvation = 82.051769 kcal Electronic energy + Delta-G solvation = -20020.997724 eV Core-core repulsion = 16983.394512 eV Total energy + Delta-G solvation = -3037.603212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.96531 -40.62456 -38.19107 -35.91139 -35.09302 -33.37943 -32.74828 -31.40356 -30.12796 -27.80674 -27.00297 -24.80966 -23.95315 -23.11273 -22.01775 -21.45157 -19.68943 -18.44464 -18.08859 -17.44977 -17.07331 -16.67535 -16.37517 -15.83758 -15.32791 -14.97198 -14.80836 -14.77436 -14.66015 -14.22286 -14.04496 -13.69515 -13.48758 -13.18825 -12.95848 -12.80929 -12.63735 -12.42648 -12.17020 -11.90649 -11.34108 -11.26292 -10.91512 -10.48619 -10.09179 -9.97506 -9.19613 -9.07818 -8.73531 -6.58674 -0.25322 0.46090 0.74711 0.84958 1.22571 1.35068 1.40799 1.78387 1.91252 2.01909 2.51214 2.97966 3.39732 3.54546 3.58609 3.74002 3.91816 4.10147 4.24940 4.33262 4.38847 4.42154 4.53167 4.61586 4.65347 4.70144 4.75298 4.81002 5.02557 5.16004 5.27255 5.42983 5.46227 5.53048 5.64081 5.81804 5.92573 5.98952 6.10144 6.31245 6.45213 6.57891 6.93843 7.47916 7.98001 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.004300 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.845513 B = 6509.496400 C = 7316.649855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.499 5.499 3 C 0.264 3.736 4 N -0.534 5.534 5 C 0.013 3.987 6 C -0.070 4.070 7 C -0.121 4.121 8 C -0.002 4.002 9 C 0.006 3.994 10 C -0.102 4.102 11 C -0.185 4.185 12 C 0.031 3.969 13 C -0.451 4.451 14 H 0.075 0.925 15 C 0.057 3.943 16 N -0.819 5.819 17 Si 0.958 3.042 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.267 1.267 21 C -0.045 4.045 22 N -0.456 5.456 23 C -0.110 4.110 24 C 0.032 3.968 25 H 0.084 0.916 26 H 0.125 0.875 27 H 0.074 0.926 28 H 0.261 0.739 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.130 0.870 33 H 0.302 0.698 34 H 0.129 0.871 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.472 18.259 1.162 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.189 5.189 3 C -0.021 4.021 4 N -0.254 5.254 5 C -0.105 4.105 6 C -0.089 4.089 7 C -0.142 4.142 8 C -0.005 4.005 9 C -0.129 4.129 10 C -0.122 4.122 11 C -0.210 4.210 12 C 0.026 3.974 13 C -0.480 4.480 14 H 0.093 0.907 15 C -0.162 4.162 16 N -0.443 5.443 17 Si 0.781 3.219 18 H -0.182 1.182 19 H -0.191 1.191 20 H -0.191 1.191 21 C -0.207 4.207 22 N -0.164 5.164 23 C -0.132 4.132 24 C -0.077 4.077 25 H 0.102 0.898 26 H 0.143 0.857 27 H 0.093 0.907 28 H 0.277 0.723 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.779 19.087 1.157 19.138 hybrid contribution -0.710 -1.569 0.315 1.751 sum -1.489 17.517 1.472 17.642 Atomic orbital electron populations 1.22263 0.73869 1.05989 1.04574 1.45542 1.08624 1.04679 1.60048 1.26229 0.84384 0.94730 0.96734 1.70338 1.20270 1.10668 1.24134 1.19436 0.92746 0.90868 1.07425 1.20079 0.97961 0.90959 0.99922 1.20883 0.95752 0.95252 1.02271 1.18358 0.93299 0.89799 0.99014 1.19370 0.88685 0.92580 1.12292 1.21687 0.99806 0.93164 0.97497 1.21384 0.96035 0.95649 1.07945 1.18842 0.93598 0.94225 0.90753 1.19495 1.04896 0.92011 1.31559 0.90681 1.26740 0.96154 0.96172 0.97103 1.69663 1.20602 1.18478 1.35537 0.85607 0.79141 0.78435 0.78679 1.18202 1.19079 1.19121 1.22443 0.98176 0.88289 1.11823 1.66963 1.23485 1.16868 1.09091 1.19929 0.99538 0.88628 1.05138 1.18917 0.91989 0.89594 1.07242 0.89790 0.85692 0.90705 0.72343 0.83442 0.83089 0.83050 0.85172 0.88721 0.85415 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 11.18 127.77 1.43 2.45 16 2 N -0.50 -11.45 3.21 -543.67 -1.74 -13.20 16 3 C 0.26 5.37 12.50 180.05 2.25 7.62 16 4 N -0.53 -15.36 11.27 -191.75 -2.16 -17.52 16 5 C 0.01 0.43 7.23 39.61 0.29 0.72 16 6 C -0.07 -2.07 10.03 22.23 0.22 -1.85 16 7 C -0.12 -3.74 9.33 22.26 0.21 -3.54 16 8 C 0.00 -0.08 5.88 -20.00 -0.12 -0.20 16 9 C 0.01 0.27 6.73 41.91 0.28 0.56 16 10 C -0.10 -4.03 9.38 22.30 0.21 -3.83 16 11 C -0.18 -8.10 9.87 22.64 0.22 -7.88 16 12 C 0.03 1.52 5.12 -21.17 -0.11 1.41 16 13 C -0.45 -23.70 9.58 23.37 0.22 -23.48 16 14 H 0.08 4.13 8.06 -2.91 -0.02 4.11 16 15 C 0.06 2.88 5.41 85.27 0.46 3.35 16 16 N -0.82 -41.55 13.93 21.84 0.30 -41.24 16 17 Si 0.96 41.38 24.52 68.60 1.68 43.06 16 18 H -0.26 -10.70 6.71 99.48 0.67 -10.03 16 19 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 20 H -0.27 -12.37 6.86 99.48 0.68 -11.69 16 21 C -0.04 -2.21 8.36 85.45 0.71 -1.50 16 22 N -0.46 -21.68 9.37 -182.76 -1.71 -23.39 16 23 C -0.11 -3.98 9.56 22.59 0.22 -3.76 16 24 C 0.03 1.01 6.87 38.80 0.27 1.27 16 25 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.26 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.15 3.86 6.11 -2.91 -0.02 3.84 16 31 H 0.15 4.64 6.12 -2.91 -0.02 4.63 16 32 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 33 H 0.30 13.61 8.30 -92.71 -0.77 12.84 16 34 H 0.13 6.25 4.72 -2.91 -0.01 6.23 16 35 H 0.12 4.37 7.51 -2.91 -0.02 4.35 16 Total: -1.00 -67.03 299.41 4.20 -62.83 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.06 Total: 18.11 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 6.77 Total: -28.65 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -5.31 Total: -95.34 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.68 Total: 43.06 kcal Total: -67.03 4.20 -62.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240316180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.880 kcal (2) G-P(sol) polarization free energy of solvation -67.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds