Wall clock time and date at job start Tue Mar 31 2020 01:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35960 * 126.37060 * 2 1 4 4 N 1.30214 * 110.13930 * 179.97438 * 3 2 1 5 5 C 1.35584 * 109.71475 * 359.97438 * 4 3 2 6 6 C 1.40068 * 133.38784 * 180.02562 * 5 4 3 7 7 C 1.36165 * 120.09107 * 179.79360 * 6 5 4 8 8 C 1.40248 * 120.51353 * 0.46151 * 7 6 5 9 9 C 1.47639 * 119.94645 * 179.76532 * 8 7 6 10 10 C 1.39782 * 120.66404 * 129.44498 * 9 8 7 11 11 C 1.38311 * 118.47438 * 179.73247 * 10 9 8 12 12 C 1.39097 * 119.74302 * 0.54873 * 11 10 9 13 13 N 1.31261 * 121.35680 * 359.71619 * 12 11 10 14 14 C 1.33719 * 121.64149 * 359.97438 * 13 12 11 15 15 C 1.40733 * 119.94825 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99860 * 171.44957 * 15 14 13 17 17 C 1.40119 * 120.00297 * 351.45754 * 15 14 13 18 18 N 1.30720 * 119.99562 * 6.04611 * 17 15 14 19 19 Si 1.86793 * 120.00345 * 186.04930 * 17 15 14 20 20 H 1.48497 * 109.47208 * 94.97493 * 19 17 15 21 21 H 1.48502 * 109.47400 * 214.98186 * 19 17 15 22 22 H 1.48503 * 109.47021 * 334.97527 * 19 17 15 23 23 C 1.39483 * 120.11119 * 359.48756 * 8 7 6 24 24 C 1.38184 * 126.37333 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47055 * 270.00091 * 1 2 3 26 26 H 1.08998 * 109.47236 * 30.00404 * 1 2 3 27 27 H 1.09000 * 109.46833 * 150.00574 * 1 2 3 28 28 H 1.08002 * 124.92764 * 359.97255 * 3 2 1 29 29 H 1.08005 * 119.95321 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.74504 * 180.22107 * 7 6 5 31 31 H 1.08002 * 120.76135 * 359.97438 * 10 9 8 32 32 H 1.08005 * 120.12812 * 180.26556 * 11 10 9 33 33 H 1.08001 * 119.31885 * 179.74341 * 12 11 10 34 34 H 0.97001 * 119.99358 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.21746 * 180.29779 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0947 0.0000 4 7 3.5215 0.7308 0.0005 5 6 3.6039 -0.6226 0.0015 6 6 4.6784 -1.5211 0.0028 7 6 4.4463 -2.8628 0.0078 8 6 3.1344 -3.3586 0.0019 9 6 2.8972 -4.8158 0.0022 10 6 2.0242 -5.3958 0.9270 11 6 1.8311 -6.7647 0.8830 12 6 2.5103 -7.5273 -0.0614 13 7 3.3324 -6.9746 -0.9225 14 6 3.5551 -5.6561 -0.9330 15 6 4.4437 -5.1011 -1.8726 16 1 4.5207 -4.0288 -1.9751 17 6 5.2284 -5.9397 -2.6753 18 7 5.0514 -7.2343 -2.6366 19 14 6.5273 -5.2079 -3.8006 20 1 7.8435 -5.2235 -3.1132 21 1 6.6105 -6.0097 -5.0478 22 1 6.1604 -3.8084 -4.1356 23 6 2.0533 -2.4773 0.0017 24 6 2.2845 -1.1126 0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 1.9250 2.1177 -0.0004 29 1 5.6924 -1.1492 0.0029 30 1 5.2789 -3.5506 0.0124 31 1 1.5092 -4.7885 1.6567 32 1 1.1592 -7.2402 1.5822 33 1 2.3576 -8.5962 -0.0870 34 1 5.5949 -7.8149 -3.1920 35 1 1.0423 -2.8572 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240321092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:38 Heat of formation + Delta-G solvation = 107.377640 kcal Electronic energy + Delta-G solvation = -20546.494326 eV Core-core repulsion = 17509.989326 eV Total energy + Delta-G solvation = -3036.505000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65026 -38.49727 -36.52701 -33.95973 -33.75380 -31.33247 -30.40845 -29.88910 -27.72718 -26.79571 -25.67592 -23.20991 -21.97761 -21.39600 -20.35963 -20.03875 -17.57095 -16.74109 -16.69290 -15.59374 -15.46803 -15.26241 -14.45183 -14.24028 -13.83711 -13.58844 -13.28791 -13.08270 -12.79965 -12.64112 -12.30495 -12.17510 -11.60776 -11.30027 -11.22553 -11.13578 -10.97509 -10.73942 -10.40771 -10.00649 -9.90148 -9.55437 -9.44242 -8.42431 -7.92893 -7.73761 -7.67461 -7.14046 -6.52931 -4.59499 1.41329 2.09396 2.63778 2.85330 2.90647 3.05909 3.11014 3.17281 3.30938 3.88777 4.48293 4.62082 4.65815 4.72361 4.91326 5.09900 5.31990 5.52851 5.67445 5.76741 5.94875 6.01902 6.02602 6.05015 6.14091 6.41231 6.47618 6.70356 6.76051 6.90703 7.00009 7.06610 7.20094 7.30059 7.40813 7.48726 7.59891 7.69212 7.95358 8.17333 8.24212 8.53726 8.82712 9.98950 10.18145 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.006287 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.064294 B = 4452.845661 C = 5743.748146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.502 5.502 3 C 0.231 3.769 4 N -0.496 5.496 5 C 0.021 3.979 6 C -0.073 4.073 7 C -0.105 4.105 8 C 0.054 3.946 9 C -0.238 4.238 10 C -0.031 4.031 11 C -0.321 4.321 12 C 0.134 3.866 13 N -0.482 5.482 14 C 0.269 3.731 15 C -0.416 4.416 16 H 0.094 0.906 17 C 0.068 3.932 18 N -0.708 5.708 19 Si 0.903 3.097 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.257 1.257 23 C -0.138 4.138 24 C 0.055 3.945 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.205 0.795 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.275 0.725 35 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 9.714 3.038 11.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.194 5.194 3 C -0.054 4.054 4 N -0.215 5.215 5 C -0.096 4.096 6 C -0.093 4.093 7 C -0.125 4.125 8 C 0.052 3.948 9 C -0.243 4.243 10 C -0.055 4.055 11 C -0.345 4.345 12 C -0.035 4.035 13 N -0.193 5.193 14 C 0.146 3.854 15 C -0.446 4.446 16 H 0.112 0.888 17 C -0.158 4.158 18 N -0.328 5.328 19 Si 0.727 3.273 20 H -0.191 1.191 21 H -0.200 1.200 22 H -0.181 1.181 23 C -0.159 4.159 24 C -0.052 4.052 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.221 0.779 29 H 0.139 0.861 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.732 9.554 2.283 10.903 hybrid contribution -0.877 0.301 0.177 0.944 sum -5.609 9.855 2.461 11.603 Atomic orbital electron populations 1.21863 0.76858 1.04234 1.02933 1.45151 1.06756 1.05749 1.61745 1.25044 0.85495 0.92973 1.01847 1.70260 1.18113 1.11774 1.21339 1.18984 0.92336 0.89654 1.08644 1.19884 0.96748 0.91552 1.01102 1.20996 0.97399 0.94113 1.00000 1.18458 0.91338 0.92204 0.92834 1.19292 1.09119 0.91216 1.04662 1.20893 0.94519 0.94396 0.95710 1.21214 1.11141 0.94675 1.07423 1.22621 0.91758 0.98544 0.90586 1.68769 1.16616 1.11585 1.22355 1.18525 0.89670 0.87039 0.90148 1.19793 1.15877 0.95024 1.13915 0.88764 1.26154 0.98076 0.94668 0.96948 1.70126 1.30405 1.03893 1.28339 0.86350 0.80845 0.80579 0.79556 1.19114 1.19971 1.18096 1.19971 0.99063 0.88052 1.08818 1.18798 0.90867 0.89098 1.06443 0.91244 0.89877 0.89960 0.77894 0.86052 0.84612 0.88609 0.88686 0.86344 0.91359 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 11.18 59.85 0.67 1.43 16 2 N -0.50 -7.09 3.21 -123.19 -0.40 -7.49 16 3 C 0.23 3.16 12.50 -89.77 -1.12 2.04 16 4 N -0.50 -8.78 11.27 -11.95 -0.13 -8.91 16 5 C 0.02 0.40 7.23 -84.57 -0.61 -0.21 16 6 C -0.07 -1.39 10.03 -39.64 -0.40 -1.79 16 7 C -0.11 -2.13 7.56 -39.57 -0.30 -2.43 16 8 C 0.05 1.15 4.97 -104.84 -0.52 0.63 16 9 C -0.24 -5.59 5.52 -104.08 -0.57 -6.16 16 10 C -0.03 -0.67 9.66 -38.98 -0.38 -1.05 16 11 C -0.32 -6.95 10.10 -39.24 -0.40 -7.34 16 12 C 0.13 3.13 11.17 -17.48 -0.20 2.94 16 13 N -0.48 -12.85 7.90 -10.90 -0.09 -12.94 16 14 C 0.27 7.05 6.54 -84.70 -0.55 6.50 16 15 C -0.42 -10.67 7.74 -37.93 -0.29 -10.96 16 16 H 0.09 2.33 5.64 -52.49 -0.30 2.03 16 17 C 0.07 1.68 5.49 -17.32 -0.10 1.59 16 18 N -0.71 -18.19 11.50 55.56 0.64 -17.55 16 19 Si 0.90 18.29 29.56 -169.99 -5.03 13.26 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.14 -2.64 9.54 -39.05 -0.37 -3.01 16 24 C 0.06 1.00 6.86 -83.99 -0.58 0.43 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.20 1.71 8.06 -52.49 -0.42 1.29 16 29 H 0.12 2.06 8.06 -52.48 -0.42 1.63 16 30 H 0.14 2.78 7.30 -52.49 -0.38 2.40 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 33 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 34 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 35 H 0.11 2.01 8.05 -52.49 -0.42 1.59 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -31.08 304.85 -9.74 -40.83 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.62 Total: 5.60 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -5.72 Total: -17.40 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.02 Total: -46.89 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.08 -9.74 -40.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.205 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds