Wall clock time and date at job start Tue Mar 31 2020 01:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35960 * 126.37060 * 2 1 4 4 N 1.30214 * 110.13930 * 179.97438 * 3 2 1 5 5 C 1.35584 * 109.71475 * 359.97438 * 4 3 2 6 6 C 1.40068 * 133.38784 * 180.02562 * 5 4 3 7 7 C 1.36165 * 120.09107 * 179.79360 * 6 5 4 8 8 C 1.40248 * 120.51353 * 0.46151 * 7 6 5 9 9 C 1.47639 * 119.94645 * 179.76532 * 8 7 6 10 10 C 1.39782 * 120.66404 * 129.44498 * 9 8 7 11 11 C 1.38311 * 118.47438 * 179.73247 * 10 9 8 12 12 C 1.39097 * 119.74302 * 0.54873 * 11 10 9 13 13 N 1.31261 * 121.35680 * 359.71619 * 12 11 10 14 14 C 1.33719 * 121.64149 * 359.97438 * 13 12 11 15 15 C 1.40733 * 119.94825 * 180.02562 * 14 13 12 16 16 H 1.07998 * 119.99860 * 171.44957 * 15 14 13 17 17 C 1.40119 * 120.00297 * 351.45754 * 15 14 13 18 18 N 1.30720 * 119.99562 * 6.04611 * 17 15 14 19 19 Si 1.86793 * 120.00345 * 186.04930 * 17 15 14 20 20 H 1.48497 * 109.47208 * 94.97493 * 19 17 15 21 21 H 1.48502 * 109.47400 * 214.98186 * 19 17 15 22 22 H 1.48503 * 109.47021 * 334.97527 * 19 17 15 23 23 C 1.39483 * 120.11119 * 359.48756 * 8 7 6 24 24 C 1.38184 * 126.37333 * 179.97438 * 2 1 3 25 25 H 1.08999 * 109.47055 * 270.00091 * 1 2 3 26 26 H 1.08998 * 109.47236 * 30.00404 * 1 2 3 27 27 H 1.09000 * 109.46833 * 150.00574 * 1 2 3 28 28 H 1.08002 * 124.92764 * 359.97255 * 3 2 1 29 29 H 1.08005 * 119.95321 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.74504 * 180.22107 * 7 6 5 31 31 H 1.08002 * 120.76135 * 359.97438 * 10 9 8 32 32 H 1.08005 * 120.12812 * 180.26556 * 11 10 9 33 33 H 1.08001 * 119.31885 * 179.74341 * 12 11 10 34 34 H 0.97001 * 119.99358 * 180.02562 * 18 17 15 35 35 H 1.08002 * 120.21746 * 180.29779 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0947 0.0000 4 7 3.5215 0.7308 0.0005 5 6 3.6039 -0.6226 0.0015 6 6 4.6784 -1.5211 0.0028 7 6 4.4463 -2.8628 0.0078 8 6 3.1344 -3.3586 0.0019 9 6 2.8972 -4.8158 0.0022 10 6 2.0242 -5.3958 0.9270 11 6 1.8311 -6.7647 0.8830 12 6 2.5103 -7.5273 -0.0614 13 7 3.3324 -6.9746 -0.9225 14 6 3.5551 -5.6561 -0.9330 15 6 4.4437 -5.1011 -1.8726 16 1 4.5207 -4.0288 -1.9751 17 6 5.2284 -5.9397 -2.6753 18 7 5.0514 -7.2343 -2.6366 19 14 6.5273 -5.2079 -3.8006 20 1 7.8435 -5.2235 -3.1132 21 1 6.6105 -6.0097 -5.0478 22 1 6.1604 -3.8084 -4.1356 23 6 2.0533 -2.4773 0.0017 24 6 2.2845 -1.1126 0.0005 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 1.9250 2.1177 -0.0004 29 1 5.6924 -1.1492 0.0029 30 1 5.2789 -3.5506 0.0124 31 1 1.5092 -4.7885 1.6567 32 1 1.1592 -7.2402 1.5822 33 1 2.3576 -8.5962 -0.0870 34 1 5.5949 -7.8149 -3.1920 35 1 1.0423 -2.8572 0.0020 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240321092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:36 Heat of formation + Delta-G solvation = 91.099913 kcal Electronic energy + Delta-G solvation = -20547.200181 eV Core-core repulsion = 17509.989326 eV Total energy + Delta-G solvation = -3037.210855 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.91247 -40.23365 -38.02776 -35.56627 -35.12079 -32.97756 -32.16294 -31.30917 -29.27987 -27.82425 -27.39784 -24.69427 -23.50228 -23.09806 -21.88174 -21.34380 -19.39519 -18.12012 -17.92766 -17.28000 -16.73531 -16.61468 -16.11498 -15.96933 -15.21804 -14.93936 -14.71053 -14.39462 -14.08042 -13.98775 -13.88744 -13.45415 -13.20607 -12.91666 -12.90203 -12.79024 -12.47759 -12.28795 -12.05148 -11.59762 -11.23786 -11.21273 -10.86574 -10.17242 -9.65757 -9.51112 -9.11715 -8.70827 -8.32601 -6.46426 -0.00017 0.59109 0.93795 1.18862 1.38848 1.51488 1.52565 1.82563 1.98907 2.20558 2.82558 3.00328 3.46338 3.74922 3.92777 3.97395 4.08909 4.24491 4.33884 4.46122 4.47462 4.54274 4.58893 4.72393 4.75315 4.80227 4.90370 5.00226 5.20005 5.30920 5.43532 5.52273 5.59596 5.63610 5.80243 5.98235 6.05414 6.18271 6.32015 6.37231 6.71162 6.97596 6.99688 8.17061 8.40368 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.006287 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.064294 B = 4452.845661 C = 5743.748146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.498 5.498 3 C 0.261 3.739 4 N -0.538 5.538 5 C 0.008 3.992 6 C -0.080 4.080 7 C -0.114 4.114 8 C 0.021 3.979 9 C -0.239 4.239 10 C -0.040 4.040 11 C -0.310 4.310 12 C 0.110 3.890 13 N -0.520 5.520 14 C 0.239 3.761 15 C -0.446 4.446 16 H 0.092 0.908 17 C 0.029 3.971 18 N -0.748 5.748 19 Si 0.972 3.028 20 H -0.260 1.260 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.125 4.125 24 C 0.040 3.960 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.262 0.738 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.280 0.720 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 12.465 3.527 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.188 5.188 3 C -0.024 4.024 4 N -0.258 5.258 5 C -0.109 4.109 6 C -0.100 4.100 7 C -0.134 4.134 8 C 0.019 3.981 9 C -0.244 4.244 10 C -0.064 4.064 11 C -0.333 4.333 12 C -0.056 4.056 13 N -0.233 5.233 14 C 0.115 3.885 15 C -0.476 4.476 16 H 0.110 0.890 17 C -0.194 4.194 18 N -0.370 5.370 19 Si 0.793 3.207 20 H -0.184 1.184 21 H -0.190 1.190 22 H -0.183 1.183 23 C -0.147 4.147 24 C -0.069 4.069 25 H 0.106 0.894 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.277 0.723 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.091 0.909 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.532 12.291 2.796 14.197 hybrid contribution -0.549 -0.344 0.165 0.669 sum -7.081 11.946 2.961 14.199 Atomic orbital electron populations 1.22278 0.73608 1.06020 1.04712 1.45510 1.08631 1.04391 1.60299 1.26205 0.84300 0.94795 0.97070 1.70283 1.20629 1.10676 1.24189 1.19259 0.92805 0.90772 1.08112 1.19993 0.97785 0.91155 1.01056 1.20839 0.96839 0.94527 1.01186 1.18418 0.92365 0.91474 0.95846 1.19563 1.08449 0.92431 1.03967 1.21253 0.94465 0.94914 0.95817 1.21566 1.10305 0.94671 1.06755 1.23061 0.91821 0.99840 0.90921 1.68695 1.18168 1.12278 1.24128 1.18928 0.90666 0.87568 0.91293 1.19950 1.17309 0.95111 1.15256 0.89019 1.26938 0.99657 0.94865 0.97969 1.70206 1.31897 1.05107 1.29780 0.85329 0.78185 0.79456 0.77760 1.18409 1.18983 1.18325 1.19973 0.98812 0.88543 1.07342 1.18816 0.91591 0.89682 1.06825 0.89431 0.85965 0.90438 0.72273 0.84852 0.86151 0.85816 0.85328 0.84398 0.90889 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 11.18 127.77 1.43 2.44 16 2 N -0.50 -12.18 3.21 -543.67 -1.74 -13.92 16 3 C 0.26 5.99 12.50 180.05 2.25 8.24 16 4 N -0.54 -17.74 11.27 -191.71 -2.16 -19.90 16 5 C 0.01 0.30 7.23 39.62 0.29 0.58 16 6 C -0.08 -3.11 10.03 22.23 0.22 -2.88 16 7 C -0.11 -4.81 7.56 22.28 0.17 -4.64 16 8 C 0.02 0.93 4.97 -20.01 -0.10 0.83 16 9 C -0.24 -11.53 5.52 -19.52 -0.11 -11.64 16 10 C -0.04 -1.73 9.66 22.66 0.22 -1.51 16 11 C -0.31 -13.13 10.10 22.49 0.23 -12.91 16 12 C 0.11 5.24 11.17 84.98 0.95 6.18 16 13 N -0.52 -28.84 7.90 -188.39 -1.49 -30.33 16 14 C 0.24 13.09 6.54 40.37 0.26 13.35 16 15 C -0.45 -24.01 7.74 23.34 0.18 -23.83 16 16 H 0.09 4.80 5.64 -2.91 -0.02 4.78 16 17 C 0.03 1.46 5.49 85.31 0.47 1.93 16 18 N -0.75 -40.18 11.50 21.85 0.25 -39.93 16 19 Si 0.97 38.85 29.56 68.60 2.03 40.88 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 C -0.13 -4.73 9.54 22.61 0.22 -4.52 16 24 C 0.04 1.38 6.86 38.80 0.27 1.65 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.26 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.12 5.31 7.30 -2.91 -0.02 5.29 16 31 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.14 5.75 8.06 -2.91 -0.02 5.73 16 34 H 0.28 13.59 8.29 -92.71 -0.77 12.82 16 35 H 0.12 4.25 8.05 -2.91 -0.02 4.23 16 Total: -1.00 -71.26 304.85 4.94 -66.31 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: 1.12 Total: 23.62 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 6.94 Total: -26.74 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -5.14 Total: -104.08 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -71.26 4.94 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240321092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.413 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds